Array 1 22285-16296 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBDL01000004.1 Methylogaea oryzae JCM 16910, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 22284 28 100.0 33 ............................ GAAATCGCGCGCCGTGTCGAAATCCTCGTCTTC 22223 28 100.0 33 ............................ CTTGGATATTGTTGCCAACATGCAGCCCGCAAA 22162 28 100.0 33 ............................ TGCGGACAGTAGCAAATGATGATGGCACATATT 22101 28 100.0 33 ............................ CCTTGTTTCTCCCTCCGCTGACGTGGTGATTGC 22040 28 100.0 33 ............................ CTTTAGCCGTTAGCCTCCCCGTGAACTCATGGA 21979 28 100.0 33 ............................ TTCAAACGCAGCAAGCACAATCGAAGAGTGGGT 21918 28 100.0 33 ............................ TTTCGCATCCTCTACGGCTTTTTTGTCGTCGGG 21857 28 100.0 33 ............................ CGCCCAGGCCAAATATGCCAGCAGGCCGGATGG 21796 28 100.0 32 ............................ TGCGGCTGGTTGATCCGACATGGCCGAGGCGA 21736 28 100.0 33 ............................ TGGGCGCGGCTGCTGGATGCGCAGTCGCGGGGT 21675 28 100.0 33 ............................ CGCTGGCGCGGCGACGGGCTTATTTGTACGGGG 21614 28 100.0 33 ............................ CAGCCATTGAAATTCTCCTAGTGATTAAGCCGC 21553 28 100.0 33 ............................ CTGGTTCTTCCTGGCTTTGAGTTGGCAGAAGAG 21492 28 100.0 33 ............................ CGATTATGACGAATTACAAAAATTCGTTGATGA 21431 28 100.0 33 ............................ CTCATTTTTTAGCCCGCGCGCAGACATGGTTTT 21370 28 100.0 33 ............................ CCCAGTATGCCTGCGTGGCGCTGGACTGCTTCG 21309 28 100.0 33 ............................ CAACGCCAACCAATTAACAATCACGACTGGGAC 21248 28 100.0 33 ............................ CATCAACGTAACGGTGCCATCTGCTGCGCAGGG 21187 28 100.0 33 ............................ TTACACAACATGTAATGATTGGGTAATCGTCGG 21126 28 100.0 33 ............................ CGGCGTTAGGGTCGCCGGCCTGAAGCAACAACC 21065 28 100.0 33 ............................ TATCGCGCAGCGCCTGGCGGTACGTCTCCCATA 21004 28 100.0 32 ............................ TGTAAAGCGGCTGGCCTGGCACTGGCGGCAAC 20944 28 100.0 33 ............................ TGCGATCAGCTCGCCCATTTATGCGTCCTCGGT 20883 28 100.0 33 ............................ GTTTCTTGCTAGCTGTTTAAACCCGGCTTCAAC 20822 28 100.0 33 ............................ CGGAGCCATCAGGTAGCCGCTTAACGTCGTTTC 20761 28 100.0 33 ............................ CCTATTGCCAGGGCGAGGACGGCGCGAGGCAAT 20700 28 100.0 33 ............................ CCACAAGCCGCGCCTGAAATCGGTGGATGCGTC 20639 28 100.0 33 ............................ GCGGCATGACCCAGCGCGCATACGAGTGGTTGC 20578 28 100.0 32 ............................ CTTATCGGAAGTTCCAAAACTATTATCCTGAT 20518 28 100.0 33 ............................ CAACCGCGAGCTGTGGCGCACGCCCATCGCCGA 20457 28 100.0 33 ............................ CCTGCGCCGATACGCCGTCAATCGTCTGCGTTC 20396 27 96.4 32 ....................-....... GCTTTTGCCGCCCGCCACCCATTCGCGCAGGG 20337 27 96.4 33 ....................-....... TCTATGGCAAAGACGCCGGCCCGCTGGGGTTCG 20277 28 100.0 33 ............................ CGTGCCCTGGCGAATGCTGGAGAAATTCACGCC 20216 28 100.0 33 ............................ CTGGCAAACAACTGGGCGGCATCGACCATCTGC 20155 28 100.0 32 ............................ GACTACGTGCGGGCGTTCATGCGCCTGGTGCG 20095 28 100.0 33 ............................ TTAGCCATGGTTATGCGGTTCCGTGGTTGTATG 20034 28 100.0 32 ............................ GTGTATTCGTTAGCGGCATCGTCCACAGCGTT 19974 28 100.0 33 ............................ TTTACCGCCCCAGTTACTCGGTCATAAAACTCT 19913 28 100.0 32 ............................ CATGGGGGAAATGGCGGAACGGCCGGCCAGCT 19853 28 100.0 33 ............................ TCCGAGTTCTTTGCCGATCTTGCGCAAAAGTTC 19792 28 100.0 33 ............................ CAGAATCAAAGAGTTATGTTGCCAGAAAGGAAT 19731 28 100.0 33 ............................ TTCAGCCAACGCCTGCGCCGCCTTAGCCTTGTC 19670 28 100.0 32 ............................ TCGTCGGGCGCAGGCCTGCAACGGTTCGCGCC 19610 28 100.0 33 ............................ CCGTTTTCGTGGAAATCGCCGAGGACATGAAGG 19549 28 100.0 33 ............................ CGCTTTTTGTGTGGTGAGCAAATCAAACGGAAA 19488 28 100.0 32 ............................ CGCCACCGTTTTCTATCCGCCACGACAATAAT 19428 28 100.0 33 ............................ CACTGTAGACGCTAGAGCATGATGCTCACCGCC 19367 28 100.0 33 ............................ TTGGCTTCCACGCCTGGTTTTTGGCCGGTTTGT 19306 28 100.0 33 ............................ TCAAATCAAACACAAGGCATGCTGCCTCTCGTC 19245 28 100.0 33 ............................ CTTGTTTGTTTTATCTGACCCATCTGACCCAAA 19184 28 100.0 33 ............................ TTATCGTAAAATCCTGGTTCCATCGTTAGCCTA 19123 28 100.0 33 ............................ TGGCCCACCGCCGCCCCAGTGTCCTATAGCACT 19062 28 100.0 33 ............................ ATAACAAGGTGGAAACCCCCGGCAATCCCACGG 19001 28 100.0 33 ............................ GTTCCAAAGCCGAGACCTGCGCCGCACATGGAA 18940 28 100.0 33 ............................ CACGGAGCCATCGGGTAGCCGCTTGACGTGGTT 18879 28 100.0 32 ............................ CGATCCGGGGTTTTTGTGGGCGCTTACTTAGG 18819 28 100.0 32 ............................ CAGATCGCCGATCAAAACCGCTGCACTTCGCC 18759 28 100.0 32 ............................ TGCTGTGCAAGATCGGCAAGGGACTTGGGGCG 18699 28 100.0 33 ............................ TTGGACTCGATGATATCCGCGACAAATCGTTTT 18638 28 100.0 33 ............................ CTTGCGCGGTATGGTCAGGATTACGCTAGCAAC 18577 28 100.0 33 ............................ ATCACTAAGGAAGAGCAAGCCAGGGCACGAGAC 18516 28 100.0 33 ............................ CTCGAGCCGCTTCACAAGCATCCGCGTAATCTG 18455 28 100.0 33 ............................ CTTCCAGGAAGTCGGTGTTGATGAAATACGCAT 18394 28 100.0 33 ............................ CATCAAATCCAGAATGATGGCCGCAATGCGCTG 18333 28 100.0 34 ............................ CCTATAAAAATAACGTCGTCACACGCACAGGCCG 18271 28 100.0 33 ............................ CGCAATATCCGAGTTCCGCTCCAAAACGGCAGC 18210 28 100.0 33 ............................ CGGATAGGCAGCGCTTGGCTGGGTTTTAAACAC 18149 28 100.0 33 ............................ TGTAATATCCACAATGGGGGCATTGCTTATAAA 18088 28 100.0 33 ............................ TTCCGCTGTCTTGTTCAAGGCCTCCGGGTGCAA 18027 28 100.0 33 ............................ CTTACTCCGAGTCCGATACTCCAAGATTCGATC 17966 28 100.0 33 ............................ TACGTTCTTTGGGTGGGGCAGCACTCGTGACAT 17905 28 100.0 33 ............................ CCGCGCCGACGTTTTGCCATCGGCCTTTCTTGT 17844 28 100.0 33 ............................ CGCCGGCCATTTTTGCATGCGCCGACGTTTTGG 17783 28 100.0 33 ............................ CCATGTTAAACCCCCAACATCTGAGCGATGAAC 17722 28 100.0 33 ............................ TTAAATAGAAAAAGCCCAATGATGTCACGGGGC 17661 28 100.0 33 ............................ CGATAACCCCAGCAGCGCCTCGTCCTCCGCGTC 17600 28 100.0 33 ............................ CGCCAGCCCCATCCCGCCGACACAGCGACAGCA 17539 28 100.0 33 ............................ CGTCATGTTGCGTCACGCCCCCGGCGGCGGTAT 17478 28 100.0 33 ............................ TTAATCGCCGCATGCACGAACACTTCGGCCTTC 17417 28 100.0 33 ............................ CCTCTACGGCCTGGGTTCGGTGGATTTAACGGC 17356 28 100.0 31 ............................ CAACGCAACGCCCGCAGCTAGCGTAGTGAAA 17297 28 100.0 33 ............................ TGCCCATTTCCACGCATGGGTGGCGCTGCTTTC 17236 28 100.0 33 ............................ TGAGTCCGCCTACCGCTGGCCTGACCGGTTGGA 17175 28 100.0 33 ............................ TTAGCCATGGTTATGCGGTTCCGTGGTTGTATG 17114 28 100.0 33 ............................ CGCATGCAAACAACGCTAAAAGAATTGGGCGAA 17053 28 100.0 33 ............................ CGCTTTGGGGTCGCGAATATCCGCGCGGGAGAC 16992 28 100.0 33 ............................ CGGCTTGATCGACCAGGAAACGCCGCTGGTGCT 16931 28 100.0 33 ............................ CCGAAGACGGCGGAGTGTCAGGATCACTCCAGC 16870 28 100.0 33 ............................ TGGGGGCGGCCGATGAATCCCCGGCGGAGCAAA 16809 28 100.0 33 ............................ CGACGACGAACGGGAACAACTTGACGATTTGTG 16748 28 100.0 33 ............................ TTGCGGTGGGAGAAAATACCGTTATCCCGCCAC 16687 28 100.0 33 ............................ CTGGTTTCCCGACACAAAAAAGGCCGCGCCGTC 16626 28 100.0 33 ............................ CAATCCTCCGCATTTCTTCGATGTCATTATCAT 16565 28 100.0 33 ............................ TCCGCCGGGCGTATGAGGCCCTGCAACCGCCAG 16504 28 100.0 33 ............................ TCGGTATTGCTGTCCGAAGACGCCACCCTGTTC 16443 28 96.4 31 ...........................T AAAGTAGCCCATGCCAACTGCGCCTCTTCGC 16384 28 100.0 33 ............................ CATCCGCAGCTGGTTGACGTAGTCGGGCGGGAA 16323 28 92.9 0 ......................C..G.. | ========== ====== ====== ====== ============================ ================================== ================== 99 28 99.8 33 GTTTCCCCCGCACACGCGGGGATCGACC # Left flank : TGTCGCCAAGCGCGTCCAGGACAATCCGGAACTGCTGTTGGAACGGGAACTGCGCAAGGAAGCCGCGCGGCTGTTTCGCAAGCAGCAGGTCATCCCCAAAATGATCGACCGCACCAAGGAGCTGCTCCATGTCGATGACCGTGGTGGTAACCCGTAACGTCGCGACACGGGTGCGGGGATTCCTCGCCTCCTCCATGCTGGAGCTGGCGCCCGGCGTCTACAGCGCGCCGTATTTATCGCCCGCCGTGCGGGAACGTATCTGGGCGGTGCTGGACGATTGGTTCGTGGCGGAACAGGAGGCTTCCGTCGTCATGGTCTGGCACGACGCCAAAATGCCCGGCGGACAAAATGTGCGCGTACTGGGGTTGCCGCCGGTGGAATTGCTGGAACTGGACGGCCTGATCGTCACCCGACGGCATTGAACGCCCAGCGATGCCCCCCGTTAGCCAAAGGGCGTGTTTTTTAACAATTTGTTATGATTCATTGCGTTAGCGATTAGG # Right flank : TTTCGCGCGCAGAGCGCGCTCCTACAGAGGGAGGTTTTTGCCGCGCGGCGGGTTGGGGGACATAAGCCTTGCGGGGCGCGGGCCGGATCCGGTTTCCTAACCGTAATCAGGAGAAAGGTTCCGCCCTCTTTGTTGGGTTACGCTGCGCTAACCCAGCTAAATTACGTGCGAACCGGCGCGGACGAAAATGCGCGTTTATCGGAAACGGGCCGCCCCTTAACGGCCCCTATACTGCCGGAGCATCAGGGATCGTGGAGCAACCCGCCACGCTGTAGACAAAGCCTCTCGTCGGCGTTTTTCCAGCAAAAGCCGGCGCAAGCGCTTTCCCGCTAGGCAGCGGGCGTAGCCAGGCGCCCGTCCTCCATGTGCCACACCGTATCCATGCGCGCCGCCAGGCGGGGATCGTGGGTGACCACCAGGAAGCTGGTTTCCAGGGTCTGGTTCAGTTCCACCATCAGGTCGTACACCTGCTCGGCGTTCTTGCTGTCCAGGTTGCCGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCACACGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //