Array 1 10850-10211 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSBI01000005.1 Lentilactobacillus parabuchneri strain FAM23282 FAM23282_scf_0005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10849 29 96.6 32 ............................A GTTGAAAAAAGGTTGACCTATCAGCAATCGCT 10788 29 100.0 32 ............................. GGAATTTGCCAATAAGACCGGAATAGCTTTCC 10727 29 100.0 32 ............................. GACGCAATCAACTCGACACTGTCCGACAAGAA 10666 29 96.6 32 ............................T GGTAATTCGTTGGTATCATATCCCACGTTTTG 10605 29 100.0 32 ............................. TGTAAGTAGTGAATCGAAGTGCTACATAATCA 10544 29 100.0 32 ............................. GTGCCGACCACCTCGCCGTTGACTGTGACTTC 10483 29 93.1 32 ......................G.....T CTTGGACAATGACTTGATGCCTGCTTCCATAG 10422 29 100.0 32 ............................. TTGTGATTCAAAATTCTTCTTTTGCTGTCTGT 10361 29 96.6 32 ............................T AATAAATGGCAATCAGCGCAAGTTGGAAAGAT 10300 29 93.1 32 ............GG............... ATGAGCTACGACTTCAATGGTTACTACACAAA 10239 29 86.2 0 ..........T.G........A.G..... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.6 32 GTATTCCCCACGCATGTGGGGGTAATCCC # Left flank : GTCAAAGATAAAATCATCTCGATTGGTGCTGTCAAACAAGCTCGAACAGGTAATTATACTGACTTCTATCAGCTGGTGAAAGTTGATTCTGATATCCCGGAGAAGATCACTAAGCTGACAGGTATCACAAGTTATCAAGTGCAGACCGACGGAGTTAAATTAGAGAACGCATTGAATTCCCTGAAGGATTTTGTTGGTGATTTGCCAATCGTTGGCTATAATTTGCATTTTGATCAAGCATTTCTTTCCGCCGGGTTTCGAAAAATTCAGCAAACAGATTTAGAGAATCAGCTGATCGATTTAATGCCAATTGTCAAAAAGACCGACCAATTCCTGGATAACTATCGGTTAGAAACAGTATTGGAAAAGTATGGTGTTGCCAATGCTGCGCCACACAATTCATTATCTGATGCCAAAGCAACACTTGGACTAGCAAATAAACTAATGGAAAACGGCCATTTGGAAATTTAAGAATGCCGTCATATCAGGGATTGTTTAGT # Right flank : AGTGCGGGATGACTTTTTTGTCAGTGAGGAGTATTCCCTACATGTGTCGGGGCAGAAAAGAAGAAATGACCTTTTCTGATAAATGCTATAATAAACGGGAAAATAACTGGTTGGAGGCAGCACAATGGAATTATATGGTGGGAAGCATATTACAATCACCGCAAAAGCAGAACGAACAACGAAACGTGACCGAATTGAGTTCATTGCAGGTCTAATTTTGATAGTTGTTGCGATTATGGCGGTGAAAACATGGTAGCGTACACCGAAGCACGTAAGCGGGCAACAAAGAAATACAGGGAGAAGCATAAGGAACGTACTAACTACCTAAACAAGCGCACGATTGCCAAAACGTTCGTTACAAAATATGGAACCATTGAGGATGTAAAAGCGTTGCAAACAATGATTGATGAAAGATTGCAACAAGAAAATGAATAAGGCCACTGGTTACAGTGGGGTTCAGAAGCTTTTGTTAGGAGCAAAAACTGAGACGCCTTTTCCAA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTAATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24359-24146 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSBI01000005.1 Lentilactobacillus parabuchneri strain FAM23282 FAM23282_scf_0005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24358 29 93.1 32 ............TG............... TCTCGGAGCTTAGTTGAATCCGTAAACTCAAG 24297 29 100.0 32 ............................. ATTGGCGATGTAATTGCAGTGTGGTACGAAGA 24236 29 93.1 33 .............G..............C GGTGATCGGTACGTGAACCCCAAGGCGCAGATG 24174 29 86.2 0 ................C.....C....AC | ========== ====== ====== ====== ============================= ================================= ================== 4 29 93.1 33 GTATTCCCCACGCATGTGGGGGTAATCCT # Left flank : TGATTTGTGAAAACGATGATATGGCACTGGGGGCACTGAATGCCTGTATTGAATTGGGCTATCAGGTTCCGCGTGATATTTCGATTATTGGGTTCGATGATATGGCCTACTCCAAATACTTGGTTCCACCTCTGACAACCGTCCGCAAGCCAACGCCAACCATTATCAGCATGGGTGTCTCCCAGTTGATGGCAATCGTTGAGAATGGCCAGCAGGATGACATCGAGCAAAAAGTGGTTGATCCCGAGATTATTGTGCGTAGTTCGGTGTTGAATATTAGTGCGGGTGAGTGAATGAATTGATTATGGATCTTTTTTCATAAATTATTGGTCATTGTGGTGACTGGCAATTTTGGAGAGAGGTCTTTTTTGTGAGATTTAAGGTTTAGTTTATAGTAAACTGTTAGTGTACTCGTGGTACATTTTGGGCGGGAGTAAAGAACTAATTGAAAATGGGTATTTTCAATTTTCATAATGCCTATGTAGCGGTGTTTGTTTAGT # Right flank : ACGTTGATATTATTAAAATATTGTATAGCGCAAAGGGATGCGTTTAAAAAGGCTAAATTTAAAGTTCATACAAATGGCTGGAAAGAAACACATTATGTATAATTAACGGTATTTACAGGGATTTTAGATAGTTGTTTAAGAAGGGATACCAGTTGTTATGAAAAAAGTACTCCATATCTCAAAAAGTCGTCCAGGACTCTGGCAAGATACCGATGTGACTTACGCACAGGTGCCAGGTTGGTTGGGACATACTACGATGGATTTAAAATTAACAGTTTTACGACAGTTTGAAGGACAACCACAGCCGCTGCCAGTTATTTTTTGGTTTGGTGGCGGCGGGTGGATGACTGTTGATCATAACGTTCATTTGCCGAATCTGGTTGATCTTGTTCGAGCAGGATTTGTTGTCGTCAGCGTTGAGTATCGTAATAGCAACCAAGCGCAATGGCCAGCTCAGTTGATTGACGCGAAGGCGGCTATTCGCTATATCAAGGCCAATG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 36542-36025 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSBI01000005.1 Lentilactobacillus parabuchneri strain FAM23282 FAM23282_scf_0005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36541 29 86.2 32 TCCC......................... GAACCCCTCCACACTGCTAAAGACGAAAACGA 36480 29 100.0 32 ............................. AACAGAGATAAAAATATAGGAGCTAGGTTGCG 36419 29 100.0 32 ............................. TCTCCTTCACGCCATACCAAGTGTTTGGGTCT 36358 29 96.6 32 ............................T TTGATATGCTTTCAATTTAGAAGCGTTCGGCA 36297 29 96.6 32 ............................T CCGATCGATGCCGGCTTGAAGGAACTTGAAGA 36236 29 100.0 32 ............................. GACAACTAACGCAATATAAATCGGAATATCCT 36175 29 100.0 32 ............................. AGGTCAAATCGATTTCGGACACAGAGCTTAGA 36114 29 93.1 32 .....T.................G..... CAATAGCCGCCTTGGTATCCGCGAATGACTTT 36053 29 72.4 0 .....T...G...C......A..G..TTT | ========== ====== ====== ====== ============================= ================================ ================== 9 29 93.9 32 GTATTCCCCACGCATGTGGGGGTAATCCC # Left flank : GGCCAAATCGGCGGCTACTCTGGCGATGTTTGGTACCCACAGCCAGCACCAAAGGATCACCCATGGCGAACAATGCCAAACGAAGCGATGACCCCACATATGTCCGGAACCACATTGTCAGCCCAAGCTCGATACGCAGCCGGCACCCGTGAAATTCTCGAAGATTTCTTGGAGGACAAACCAATCCGTCCTGAGTACTTAATTGCTCAAGGTGGCAGTTTGGCCGGTACTGGTGCCAAGTCTTACACCGTTAAGAAGGGTGAGGAGACACCAGGTAGCGGCGAGGATGAGAAGTAGGAATTCTTAAAATGAAAAAATGCGGTCTGGGAGAAGTTCTTACGGACCGTATTTTTTGTGTTTGTGTAGTGGTATTTATGAATTCTTTTATAGTAAACTGTTAGTAGGATCGTTAGAAAAAAGGTAGACCAAAATAAAAACTAATGAAAAACGAGCATTTTCTAATTTGAGAATGGCTATGTATCAGGGTTTGTTTAGTGTAT # Right flank : GCCCTCATAAGCTGGTAGCAGGCTATTCGCGTAAAGATTCATTGCTGATCGACAAAAAATCGTGATCCTGGGGGAATTTACTTCTCCTTCGAATCACGATTTTTTGTAAGTATTGAGCTGGAGTTATCCTTCAGCGTCATGAATCGCATCGGCAATATTATCAGCCGAAAAATCATGGTTCATGTATGCGTCATTACTAACCGGTAAATGTTGTTCCAGTGTATCAAACAACTGATAGGAAACGGTGCCTTTGTCTAAATGAAATGCCAACACATGGCCGCCAAACTTATGATCATCTGATAAAAAGTGGTGGTGGAAACCCGCGACCGCAGCCCCGTCAAATAATTCCGGAGAATAGTAACTAATCATTGTTCCATTCACCTGATTACGGGTAAAGATGCTTTGGGTACGCGCGGTTTCGGCTAGTGTCTGAAAAGGTGGCACGGATTTCTTAACCGCCCGAGTTTTTATTCCGGAGAAAGTGCCAGTAATTTTGATGG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTAATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //