Array 1 62-552 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWZ01000023.1 Ruminococcus sp. AF17-1AC AF17-1AC.Scaf23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 62 32 100.0 35 ................................ TTAACGAGGGGTCAACCGTAGAAATACCCTCGGAC 129 32 100.0 33 ................................ TTCCGCTTTACTGCTCGCCCTTTCTTTTATTTC 194 32 100.0 33 ................................ CTCCCAGCAAGCTAACCTTGACTATATGAGTTG 259 32 100.0 34 ................................ AAACCCACAACGCCGATTATCAAATTGGCTATGC 325 32 100.0 35 ................................ AAGATCTGCGGCAGTTCTATAGTGGCGATAGCCCT 392 32 100.0 33 ................................ ATCATACCAGCGATTGATTTTGTCGACCACATC 457 32 100.0 34 ................................ CCGCAAAATCTCATTTGTAGCTTTTTCCGTACCT 523 30 93.8 0 ..........................--.... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 99.2 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GCATAATTCTTGTTCGAATAAAATGTGTCAAGTGATATTGACAAAACCAATATACAACTCAG # Right flank : TTTTCGTTTCAACGCAGGACTTAGTGTACGTTATCCGCTCAGACCACAGCAAATGCTGTGCGTGGTGTTCAAAGTTTGCAGGAAAGTACGTTTATCCCGATGTTCTCAAGTGCATTTTCTTCTGAAGAGGAATTAGTAAAAACCATATTGCATGAAAAGTGCCACGTTTTACAGCTAAAGAAACATGGCAAAGCATATGCTCAGCAAAACTTAGATTTAATGGAAAAACAAGCTTATAGGTTTGAACGATTATTTTATAGCTTGGTTACAAAGAGGTGATAGTATGAAATGGCTTGACAATCTAGCGAGTATAAAGCAGCTCCATAAAGCAGGCAAATGCCCATATTGCGGACAAGAAAATACAGATTACAGATTGCTTGAAATAAGCAGTGGTAAAGGATATGGAGATGTTTGGTGCAATGACTGTAAAAAACCTTTTCATATTTCTCGTATAGAAGTATCAGAGACAGACATTCGAGAAAAGCAGTTACCTCCTGAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 85924-86107 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWZ01000002.1 Ruminococcus sp. AF17-1AC AF17-1AC.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================ ================== 85924 23 100.0 30 ....................... AAATATCGCAACTTCATAAAAAATTAAACT 85977 23 100.0 30 ....................... TTTTGTGTATACTTGTAATAAAATAACGAA 86030 23 95.7 32 .....................A. ACTAATAAAATCGGGACAAAAACAGCCCTGTT 86085 23 95.7 0 ..............A........ | ========== ====== ====== ====== ======================= ================================ ================== 4 23 97.8 31 TGTTCCATTTTAAATTCAAAATA # Left flank : TTGAACTTATCAAACAGATAGAAATCAATATAGATTATATTCTTATACTTGTCAAGAAATATCACGATAGTCACTGTGAAGATAAAGAGGTACTTGTTTCAATCAAGAAAGCCATTGATGCAAGCCCCGAGCTTCGCAGCAAAAAAGCTCTTATTGAAACCTTTATTGCTGGTATAAATGATGTAGAAGATGTTATGTCAGAATGGCACGACTACGTTGTAGATAGACGTGAAGAAGAACTTGTTCAAATCATTAAAGACGAAAAGCTGAAAGAACCTGAAACACGAAAATTTATAGAAAATGCATTCCGTGATGGTGAGATCAAAACAACAGGAACAGACATTGATAAGCTTATGCCTCCTGTATCTCGCTTTGGTGGTGGAAATAGAGCAGTAAAGAAACAAAGTGTTATCGATAAGTTGAAAGCTTTCTTTGAAAAGTTTTTCGGTGTTGGTGGTTCAACAAGATTCACTGATGAAGATGAACCCTAATATAAAGTA # Right flank : AAACAACTCAAAACTGCAAAATCCGAAGCATTAAATTTTCAAAAACCCAAAAATTTTTTTGAGCGATTTTCAAAAAAGTGAACATTTCCTTAAAACCCAAAAATTTTTCAGCCAAAATCGCAAAATTTTGAACATTATAGCCGTTAAAACTCAAAAGTTCAAAAATCAAAACTCGTCAAAAAAATGAACATTATAGCAAGGAAAACTCAAAAACTCAAAACTGCAAAATCCGAAAATAATGAACATTATTATTGACATAAAACAGCAAACAGCATATAACTATCGGGGCAATACAAAATCGTATTGCCCTGCGTTGTATGTATGAAAGGAGCGGAAAATGAATTATTGTGAGATAAAGAAAACCGATATCGCCAATGGCTCAGGAGTGAGGGTCACGCTGTTCGTATCAGGTTGCAGACACCACTGCAAGGGCTGTTTTCAGCCTGACACTTGGAACTTTGACTACGGCAAGCCTTTCACCGATACCACCGCAGACGAGA # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTCCATTTTAAATTCAAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 135852-136413 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWZ01000007.1 Ruminococcus sp. AF17-1AC AF17-1AC.Scaf7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 135852 32 100.0 36 ................................ GCACATCTTAGCCATTAAAGTTGATTTACCGCTACC 135920 32 100.0 33 ................................ TTGTACTAGCCCTATGATATAATCTGCACTTGT 135985 32 100.0 34 ................................ TATCTTTGTATTGCACTTGACCTCTTTAGAGGAC 136051 32 100.0 34 ................................ GAATTTGTTTATCAAGCAGATTAAATCGTTGAAC 136117 32 100.0 34 ................................ ATGTTCAACTTTAAAGTTTCTAAGGTCAGTGAAG 136183 32 100.0 35 ................................ GTGAAAATAGGACAGATAATGATAAAAATTAATAA 136250 32 100.0 33 ................................ TTCGAGTTAAGTTAATGACATTTTCAAGGGCAT 136315 32 100.0 35 ................................ GCAAGCTACATCACCAATGAAGTACCCGAGGTCGG 136382 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 100.0 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTGAGAAAAGTGTCGAAAGAGTGTCAAAATTATGGACAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGCAACAATTGGAAGCATAGAATAGAACACTACGGCACCAAAGAGACCTATGACCCCGAAGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTATTTATGAATGTACAGTGAACAAAATCAAACCGATACCAATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGT # Right flank : ACGCTGATTTTCACTAATCCTGTATAATAAAACTTGACACATACAAAACAATCAAAGTATAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 100343-100568 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWZ01000006.1 Ruminococcus sp. AF17-1AC AF17-1AC.Scaf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 100343 31 100.0 34 ............................... GGTGAATGTTACTGTTGTTGTGTTTTCCTCAAAA 100408 31 100.0 34 ............................... GATCAGAAGTCAGGATAATGTTATCCTTGTCCGT 100473 31 100.0 34 ............................... GGTCCAGAAAATCGTCTGACATTATCGTTTGTTC 100538 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 4 31 100.0 34 GTTGCAACTTACGCATAGGTGTAAAATACGA # Left flank : GAACTATCCAAATGGAAAAGCTGACGGGTATTACATCTAAATCTGATCGTTTTCTAAAAGACTGGACTTATTATGACCTCCAGACAAAGATAGAAAACAAGGCGAAAGAAGTAGGGATAAATGTCGTCTATATCGCCCCTAAATATACAAGTCAGAGATGTAGCAAATGCGGATATATCCACAAGGATAACAGACCAAATCAGGCGAAATTTAGATGTCTTGAATGCGATTTTGAAAGTAATGCAGATTATAATGCAAGTCAGAATATCGGAATTAAAAACATTGATAAGATAATAGAAAAAGATTTGCAAAAGCAAGAAAGCGAAGTCCAAGTGAACGAAAACAAGTAGAAGGTTCACACAATTTCAGGGCGACTCGGCGTCCTAAAATCGAGAAAGTGTACATAAGTTTTTAACAAAATACGGTAAATACTCTCGGTAAGGTTTTAACGTGCACATAATAATCCGTGCAACAGGGTTACACTTTTGTGCAATTTTGCA # Right flank : AAGCACTCAATTTGCATTGTGATACGATATTGAATTACAATCACATATTTGTAAAACAACAAAAGGGCTGTCCACACAGCCCTTTTGTTCTTATCTAACCTATGCCAAGCCCCCTACCCCTTAGGCTTTTTCATAGTAAGCGAAATACGCTTTTTCTTCAGGTCAACGTTAAGTACCCAAACCTTAACTACCTCCCCGACCTTTACGACCTCAAGAGGGTGCTTTATATATCTGTCGCACATCTGAGAAATATGTACAAGTCCGTCCTCGTGAACACCGATATCAACGAACGCTCCGAAGTCTATAACGTTTCTCACTGTGCCCATAAGCTCCATGCCCGGCTTCAAGTCTTTAAGCTCCATAATGTCGCCGCTTCTCATAAGCGGTGGAGGCAGCTCGTCACGAGGGTCACGACCAGGCTTTTCAAGCTCCCCTACTATGTCCTTTAACGTCGGTGCACCAATGCCAATATCTGTGGCAAGCTTCTTCATGCCCATTGC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACGCATAGGTGTAAAATACGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 44354-44786 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWZ01000014.1 Ruminococcus sp. AF17-1AC AF17-1AC.Scaf14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 44354 36 97.2 30 ......T............................. GTATATGGCTTGAGCTTTCTTAGAGTGCTT 44420 36 100.0 31 .................................... TTTCGTATACATAAGGTATAGACTTGAAGCG 44487 36 100.0 30 .................................... TATCGTCAATAAAAGATGCATCCTGTGTGC 44553 36 100.0 30 .................................... GCTAGTTCCTGTACTTGCATTTGGAGTGTC 44619 36 97.2 30 ...............A.................... GGTCAAAACACTGCACGTCATATGCCTTGG 44685 36 97.2 29 ..........A......................... TAACCACCTAGGTCACCAGCTTTGACATT 44750 35 88.9 0 ...........................-A..C...G | GG [44781] ========== ====== ====== ====== ==================================== =============================== ================== 7 36 97.2 30 CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Left flank : ACGCCGCCCTCACGCTTGGGCAGAAATGTGCTTGGGGGTATGAGCATTTTTATCACCTCTTGTATCCATTATATCACAAATGTACTTTTTGTCAATATCACAGAAAATTATTTTGCTGAAATTGTGATATAAATGCCGTAAAAACGTGATAAATGTGCAAAAACATAGATAAAAAAGTTTTTGGAAATTACACTTTTGTTGACGATGATAAGGTGGTATAATGTATACAGAACAAAGGACAGGAGGTGATAAAAATGGGAAAGACGATCCTTACGGCTATCATTGTAGCTGTACTTGACTGCGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGGAGGTGATGAAAATGCTTTATGTAAAACAGCCACTTTCTATTGACATTTGTGTCTGAAAATGGTATAATATATATGTTAAAGCGTCGATAAAATAAGTTTGGTGTTTTATCACAGAATATCATTGATTATTTTGTCAACTTTGAC # Right flank : GTTTAATATTAAAACCAACAAATAAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGAGTGATATTTATGGCAAAAAAGAATAAAATGAAGCCTAGAGAGCTGCGTGAGGCTCAGAAAAAAGCCAGACAGCTCAAAGCGGCTGAGATAAATAATAACGCTGCTCCTGCGATCGCTGCCATGCCTGCTGCAGAGGTCATTGCACCTGTGGCAGGGAAGAAAAAATCCTCCGTAAAGGCGGCAGGAATGAAGTCTATTCTTGTCAGCGAAAATAAAATGTACATAACCTCTTTCGGCAAGGGCAATTCTGCTGTGCTTGAATATGAGGTGGATAAGGTGGATAATAATGACTACAACCAAACTCAGCTTTCCTCTAAGGGCAGCAGCAATATCGAGCTTTGTGGTGTAAACGAAGTAAACATCACTTTTTCCAGCAAGCATGGCTTTGAGAGCGGAGTGGAGATAAATACTTCAAACCCTACTCACAG # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //