Array 1 50851-51678 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMZ01000002.1 Streptococcus thermophilus strain NBRC 13957 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50851 36 100.0 30 .................................... AATCCAACAGTACCAGCTGACTAACAATGT 50917 36 100.0 30 .................................... TACAACGTCTTTAAAAGTTTGAAATCGAAC 50983 36 100.0 30 .................................... AATAATGAAGATTGTCCAAGCCCAAGGCTC 51049 36 100.0 30 .................................... AAGCAAATCTTTCAACTACTGGAGCTTAAT 51115 36 100.0 30 .................................... AGAGTTTCAGATTCAATCAATACCGCTACA 51181 36 100.0 30 .................................... AAACATCTTTTAATACTTTATCTGTGTTTA 51247 36 100.0 30 .................................... AGCCATGTAGTAGTGTATCAACCACGCGCA 51313 36 100.0 30 .................................... AATATAGCTAGCGAGGTAGGTATCAAACAG 51379 36 100.0 30 .................................... TCCACTATAAGTCATTAATTACAGTAAGTT 51445 36 100.0 30 .................................... CTGGTCAATGGCTAATGCTTCAATGGATGA 51511 36 100.0 30 .................................... TCAAGTAGACATTTCTATTGATAGAAAAAT 51577 36 100.0 30 .................................... CATTACCGTCAGTATTCAAAACGATAGGGT 51643 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTTTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 64890-62873 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMZ01000001.1 Streptococcus thermophilus strain NBRC 13957 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 64889 36 100.0 30 .................................... ACTTTATAACAAATATGGATTTGAACCAAA 64823 36 100.0 30 .................................... CTTAGCAGGTACGTCTTCAACAGCAATTCA 64757 36 100.0 30 .................................... ATAGCTACACACTGCCTGACAAGTATCCTA 64691 36 100.0 30 .................................... TATTATTGCTAAAAGATTTTAATGTACCAG 64625 36 100.0 30 .................................... TTTAACGTTTTCTTTTGTTGTCTGTTCATG 64559 36 100.0 30 .................................... TTTTTTAATAAGGGGTTTGGTATGTCGGAT 64493 36 100.0 30 .................................... AGCAATACTAAAGGTTTACCTTTAACGAAT 64427 36 100.0 30 .................................... AATATCTTAAATTCAAATTCCTCGGTATAG 64361 36 100.0 30 .................................... TCTACAACTTGAAAAAATAAAACGTTGATT 64295 36 100.0 30 .................................... AGTATTCATCAGCGTCCGATAAGTGTTCAT 64229 36 100.0 30 .................................... GAACACAGCAGGTATGTCGATGAACGCATC 64163 36 100.0 30 .................................... ACTCAAAAAACATAGATGCGAAAATCCTTT 64097 36 100.0 31 .................................... TCCAGTGTCTACGATGTTAGTTTCATCGCTA 64030 36 100.0 30 .................................... CCTTAGTTGTTGGGTCAGTAATAATTCCAA 63964 36 100.0 30 .................................... TGATAGTTCCTGCAGCTTTGCCAATACCTT 63898 36 100.0 30 .................................... TTTTGAACAAGCGCACCAAGACCATAATCA 63832 36 100.0 30 .................................... TTACCAAGCCCTACCGCTTCACCTAAATAT 63766 36 100.0 30 .................................... TTATAAGCGATTTTAAGGCACTCCTCGACG 63700 36 100.0 30 .................................... TCTTCGTGTTATCACAGCTTCTACACGTTG 63634 36 100.0 30 .................................... GTTTGATTGCTACAGCCAACCTGATGAGGT 63568 36 100.0 30 .................................... GGTAATATATGGCTTCAAGATGATGAGTTA 63502 36 100.0 30 .................................... GTTAAACTTGCTTTGGTTGACCCAAAAACT 63436 36 100.0 30 .................................... ATTATTTATGGTAACTAGGTAACCTATATA 63370 36 100.0 30 .................................... ACTTGTATACTGGTGTTTAGTGCTTGGCTT 63304 36 100.0 30 .................................... ATAATTTTGCTGGATTTGACGACTGCGAGT 63238 36 100.0 30 .................................... ATAAAGAGTTTCAAGCTGGAACCTACACAG 63172 36 100.0 30 .................................... AATATCTTAAATTCAAATTCCTCGGTATAG 63106 36 97.2 30 ..........C......................... AAGGTCTATACCCTAATATAGCTGAACACG 63040 36 100.0 30 .................................... ACATGCTTGATGTTTGTGTATTTAGTAACA 62974 36 100.0 30 .................................... GAGTTGGTGACCATTTGCACCACTTTATTT 62908 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTACAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGAATTGACAAGGACAGTTATTGATTTTATAATCATTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 9762-9285 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMZ01000037.1 Streptococcus thermophilus strain NBRC 13957 sequence37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 9761 36 100.0 37 .................................... ACCTCTTTCATTTCCACAGTGTACAATCGTGCGTTTC 9688 36 100.0 39 .................................... GTTCTGATATCAGGGTAAGAAATAGACTTATTATGTTCG 9613 36 100.0 37 .................................... TCTTTGTGCCAAAAACTTCAACAATTTTTCCATTTAA 9540 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 9468 36 100.0 37 .................................... ACCAAAATATCTCACATAAATTCATTTAATTTACCTC 9395 36 100.0 39 .................................... CCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 9320 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 97.6 38 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : GAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : GAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAGAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //