Array 1 870419-867889 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIHJ01000001.1 Klebsiella pneumoniae strain TUM14030 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 870418 28 100.0 33 ............................ CAAACAACCATCCAAGTAACCTAATGCTTATGA 870357 28 100.0 33 ............................ TCTTTACACCATCAACTTTTATGTTTGAGGCCC 870296 28 100.0 33 ............................ CAGACTGGGGATTAAAGGAGTATCAGAAAGGAA 870235 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 870174 28 100.0 33 ............................ TTAAATTTGGCATCATCGATAAAGCGCCGGAGA 870113 28 100.0 33 ............................ TAGATGTATATCCTTTTGACCCTGAGTGGCCTG 870052 28 100.0 33 ............................ TATCACATAGTTTAAGCAACACCTTATCCCTGC 869991 28 100.0 33 ............................ TAGCTCTTGATACGGTGATTATTATTACCGGCA 869930 28 100.0 33 ............................ CAGGAGGGGCCATTGTCTTCTGCATGGGGCTGA 869869 28 100.0 33 ............................ CAAGGGTGTCATCAGGATAAACCACATTCTCGC 869808 28 100.0 34 ............................ TCCATCCTGACCGAATCATTACCCTCGCAGAGGG 869746 28 100.0 33 ............................ TAAAGAAAACCCCCGAAAGGGGGTTTATTTTTC 869685 28 100.0 33 ............................ TTGGCGCACCATCTCAACAGAAGCCCTCATCAC 869624 28 100.0 33 ............................ TCGTCAAACGGTACGCAGCCCTGGGAATTCTGT 869563 28 100.0 33 ............................ TGCACCAGGTAAATTGCTTGGCACGAATACTCC 869502 28 100.0 33 ............................ CTATTCTGGTCGTTCTGGGTGCCATTTAATTTT 869441 28 100.0 33 ............................ TTCTGCAGCATGGAATCCATGCATCTTCACATG 869380 28 100.0 33 ............................ TACATAACAATGCTAACAGTATGTTAATATATA 869319 28 100.0 33 ............................ TGGCGCGAACTGCTGGGTATGCAATCTGAAGGT 869258 28 100.0 33 ............................ CGCCAAGGAAAAACTAGCAAGAACTCAGGAAGC 869197 28 100.0 33 ............................ TCAATGCCACGCTGCGATAGTTTCATTTGTTAC 869136 28 100.0 33 ............................ TACATCCAGCCACTGCTACTGGAGGGTATTTAA 869075 28 100.0 33 ............................ CAAAGGGTCGAAGCTGTAAAAGGATTCGCTGCA 869014 28 100.0 33 ............................ CAATCATGCATGAGTCTGGTGAATACATGTCTT 868953 28 100.0 33 ............................ CCTGTTTCCACCTACGCAGCAGCCCGTACCAAC 868892 28 100.0 33 ............................ TCCTACCGTGGGAAGCAAAACACACATTGTTAG 868831 28 100.0 33 ............................ CGGGTACAGCGCCAGACATTCGCGAAACTCAAT 868770 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 868709 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 868648 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 868587 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 868526 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 868465 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 868404 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 868343 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 868282 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 868221 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 868160 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 868099 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 868038 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 867977 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 867916 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 42 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 880055-879172 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIHJ01000001.1 Klebsiella pneumoniae strain TUM14030 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 880054 28 100.0 33 ............................ TGACATACAAGCAACAATGAATTTAACGCCCTT 879993 28 100.0 33 ............................ TGAGATTGCACAGAAAAACACATTCTGGACGGA 879932 28 100.0 33 ............................ TGCATGGGATGGGGTTACGATTGCGCACGATAG 879871 28 100.0 33 ............................ TACGACATCACCCCCACCTCAATCAATTCTACT 879810 28 100.0 33 ............................ CAATGTCCAGCCTTTCTGGCGTTGCCAAGGGAT 879749 28 100.0 33 ............................ TAAAAAGTATATTCATGATTTTATCGAGAATGC 879688 28 100.0 33 ............................ CTACAACATGCTCTCCTCTTCCTTTGTTTTCAC 879627 28 100.0 33 ............................ CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 879566 28 96.4 33 .............G.............. TGGTATCGGCATCAGTATCATCAATGGTCATCA 879505 28 96.4 33 .............G.............. TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 879444 28 96.4 33 .............G.............. TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 879383 28 96.4 33 .............G.............. TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 879322 28 96.4 33 .............G.............. CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [879313] 879260 28 89.3 33 ............TGT............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 879199 28 85.7 0 ............TG.....A.......T | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.1 33 GTCTTCCCCACACACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //