Array 1 41-2066 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRBG01000021.1 Bifidobacterium longum subsp. longum strain W11 Contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 41 33 100.0 33 ................................. CGGTCGGCGAAGGGTATGCGTCACGTCGGCTCC 107 33 97.0 34 ................................A GCACCACTCCGGTGTATGTGCCTATCTGGTAGAC 174 33 97.0 34 ................................A CGCTGATGGGGAAGCCCAGGTCGATGAGGCGCAT 241 33 97.0 33 ................................T GTCGAACGTTGGTGATGGCCACAGCGCTGGCGT 307 33 97.0 32 ................................T CCCGCCCGTCATCCAGCCGCGACTTTCGCCCC 372 33 100.0 33 ................................. ACTCGGTTTTGTGTCGTGAGGTGGTGTTTTAGC 438 33 100.0 33 ................................. ATAATCGGCGGCATGAACGAACGATTGAGTCTC 504 33 100.0 33 ................................. TTTCGCTACTTGGTGAATTGGTATTCGGGTTCG 570 33 97.0 33 ................................G GCTCCGATTGTTGGCTGGACATGCCGGGATGCA 636 33 97.0 35 ................................T GTTGCATGGTGCGCACAATGTCAACCAGTTCGCGA 704 33 97.0 32 ................................T TGCTATGCGAAGCGTCCAGCAGCAGTTTGATA 769 33 97.0 34 ................................G TTTCCAACGTGAAATCCGTCGCATATTATGGCGC 836 33 97.0 34 ................................A CCGTCACCGTCATCATCGATTTTCGTGACTCCGA 903 33 97.0 35 ................................A TGAAACGCAGCAACCTCACCAAGATCGCAGTGGCA 971 33 97.0 33 ................................A CGCAGATGACCATGCAGCCGCACACCGACATGC 1037 33 100.0 32 ................................. CGAAGAATTTTGATGTCGCGTCACTGTATCGG 1102 33 97.0 34 ................................A CCACACCCGTACCGCTGTATTGGCGCATGGCCTC 1169 33 100.0 34 ................................. ACAGACCACTGATGAGCTGCGAGCCGGCGTTTTT 1236 33 97.0 33 ................................G ACCATACCGCGCCGGCGGCGGTGGCGATGTTAG 1302 33 100.0 33 ................................. GGTTCCGTCGTTGAACTGGCAGGGCCTGTTCCT 1368 33 97.0 36 ................................T GGATGGTTCAGATGGCGTGAAAGCGTGGTGCGGGGG 1437 33 100.0 33 ................................. CCGTATCGGGAGGCAGGATACGGGTCGGCAATC 1503 33 100.0 32 ................................. TCGAACGTGGCGAGGCTGTCGTGGAGGTTGTC 1568 33 97.0 35 ................................G AATACGTCCGACTACCGAGCACGTTCGGTGTGATA 1636 33 100.0 33 ................................. AGCCATGGCCCAACACCACGCCATATTTGTTGG 1702 33 100.0 34 ................................. GAATCGTACGACTGGGACTTGGTGCTACTCGAAC 1769 33 97.0 34 ................................T CCTGTATTGGAGGACGGGACCATTTTGTATACCA 1836 33 100.0 32 ................................. CGGCGCCGACGTGAGCGACTGGCCCGAGACAG 1901 33 100.0 34 ................................. CATCGTTGGCGACGAAAACATCCCCTTTACGCAC 1968 33 97.0 33 ................................A GCAAATAATCAAAAAACCTGTTGGACCTCGGCA 2034 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 31 33 98.4 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Left flank : TGAAATAGCATGAAAAAGTTTTGGGAGAACGATTTTTTCTG # Right flank : GGCAGGCACCCGGAAT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 14-2237 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRBG01000022.1 Bifidobacterium longum subsp. longum strain W11 Contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 14 33 100.0 32 ................................. CCCCCAGGCAGCGCGTGCAGGCGCTGGAGGAG 79 33 97.0 32 ................................C CAAAAAGTCCCCTTTAAAGTTGCGAATCGCCT 144 33 97.0 35 ................................G AACATTGGCTATGCTCCTTGCATGATTGCTTGATT 212 33 97.0 33 ................................G TCTCCGCTGGTGCGCCATACCTTGTACAGTCGG 278 33 100.0 33 ................................. ATCGGTGGTGATTTGTGTGAGTCAGCACATTTC 344 33 97.0 32 ................................T ATGGTGATGTTGACGCGTGGGATGCGTATAAG 409 33 97.0 34 ................................T CCGCGCTCCGCCGCAAGCTGACCGTAAAGACCGA 476 33 100.0 33 ................................. TCTGCGGGCAATTCTTGAGCGCCGACGCTTTCA 542 33 100.0 33 ................................. CGAGGTTATCTGCAATCTGCTGGACTGTGGTAT 608 33 100.0 34 ................................. AAACATGCGCCCCCAGTGCCCTGAGGGCCGCAGG 675 33 97.0 33 ................................T CCAACTATTTCGACAGTCGCAGCGGGACACGCA 741 33 97.0 33 ................................T CCCAACGAAACGCGAACCAAGCAGCCCCATCCC 807 33 100.0 33 ................................. ACAGCCTGTTGGACGGCTTGCGCGCCGGCGACG 873 33 100.0 34 ................................. GGTGGGTCACATCGTCGGGCGTGTACTCGCGGCC 940 33 97.0 35 ................................T TCCGCTATCCGCAAGGTTCGCCACGCGATCGCAAA 1008 33 100.0 34 ................................. GCATCCAGTGGGGCACCGACGGCATCGACCAGCA 1075 33 97.0 33 ................................G TCGTCGGTGATGACGTCGGCGGCGTCCAGGCCG 1141 33 97.0 33 ................................T TATTGTTTTGTGGGGAACCAAAAACGGTGGGCG 1207 33 100.0 32 ................................. TCCGATATACGCGCCACTTCACCTTACGTAGA 1272 33 97.0 35 ................................G GATGGTGGCGTGGATTTTACCGTGGACAAACCCGA 1340 33 100.0 33 ................................. CCTACTGGCAGATGCAAGAGTGTTACGTGCGAG 1406 33 97.0 33 ................................G GGTTGCCGCCCGACGCTGACCCCGAGGACCTTG 1472 33 97.0 37 ................................T GGACTTCGACCAGTTGGCTTCGGCGCTTACCCTTGGC 1542 33 100.0 33 ................................. GGTTTTGCAGACAGCTATAACCGGCTTGCCGAT 1608 33 97.0 33 ................................C ACCACCCCAATGCTCAACACGGCATTGGCTGCA 1674 33 97.0 33 ................................C TTCTTGGGTATATGCAAGACGGCAAGAATCATG 1740 33 100.0 34 ................................. TGTTCCTTGCCTCATGTCTAGCCAAGGCGGCTAT 1807 33 100.0 34 ................................. TGATGATTACTATGGGTGGTGCAGAGTGCGAGGC 1874 33 97.0 33 ................................T TGCCACGTGTCACCGTACGTCTGTGAGGCGCGG 1940 33 100.0 32 ................................. AAACGTCCAACCGACGGTCAAACGACCATTGC 2005 33 97.0 33 ................................T GCGTCTCCCCTGAACCGATAAGGACATAGGAGA 2071 33 100.0 34 ................................. GAGTCGTAGGACTGTGATTTAGTACTGCTGGAAC 2138 33 97.0 34 ................................C ACGGTCTGCCGTGAGATGCTGCCATAGCCGCCAG 2205 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 34 33 98.4 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GCCCATTCTTGCAG # Right flank : CCTGTCC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33-459 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRBG01000001.1 Bifidobacterium longum subsp. longum strain W11 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 33 33 97.0 33 ................................T GGCAGGAAAACCACCTCGGATTCACCACCGTCG 99 33 100.0 32 ................................. CGTCCGGCTGGAGGATAAGCGAGCTCACGGTG 164 33 97.0 32 ................................T CCGGGTATGACGTTGAGCCCGCTGTCGAGTTC 229 33 97.0 33 ................................C TGTCGTATGGGGATGGATCGCGGCCGACGTTGA 295 33 97.0 33 ................................C CAGTCGAGCACGAGCACGGCGCGGCCGATGTAG 361 33 100.0 33 ................................. ACAACATCGAAAGCATCGAACAGATGGATCCAG 427 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 7 33 98.3 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : CGGCGCGTCCGCCATCGATGAGGGTGCCTATAG # Right flank : ACCACGCCCGTATGTGTCTGTTCAATAGAAAGTGGGCCGTGTGAGCGTGTGGATGTCTTCCATGTGAGCGGCAGGTTCTGGTCCACTTCAGCGTGTGGTGAGAAACGAACACCGGCCCGTCCTGCCTGGACTAGTTTCCCGAGTTGAAAGTCAAACCGTTCGGTTTTCTCGGGAAAGGAAAGGAATGACGGTACCGGTGTCCGTACAACAACGTATCAGGGTGCTTGACGCGCATGGCATGTCATGGAGGAGCATCGCGAAAGAGGTGGGCGTGGCCCGCGACACGGTCGCGAAGTACGCCGGGAGGGAGGATTGCTCTCCCGGACCGGAGCGCTCCGTATCGCGGCCGTCGAAGCTCGATCCGTTCAGGGCGACGGTGGACGGGTGGCTGCAGGCGGACCGGTTCATGCCCCGCAAGCAGCGGCACACCGCCAAGCGCGTGTACGACAGACTCGTGTCGGAGAAGGGCTACGAGGGCTCGTATTCGCCGGTGCAGCGGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3056-3284 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRBG01000001.1 Bifidobacterium longum subsp. longum strain W11 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 3056 33 97.0 32 ................................T CCGGGATGCCGCACAGGGCCGCCGCCTCGGGG 3121 33 97.0 33 ................................G CAGTCGGTGGTACAGGTTTCCACAACGGCGACA 3187 33 100.0 32 ................................. TCGACCCTGAAGCGGTAACGGTCTGGGAAAGC 3252 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 4 33 98.5 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : ATACCCGCACGCTACTTCACCGCCGCAGGCCTGGTCATGCGGCTCCTCAGGGCCCAATCGGACAACCGGCTCGACCGGGAACTCGCCGCGATCGGCAGGACCCCGCTGCTCGTCATCGACGAACTCGGCTACGTGCCCATCGACGAGGACGGCAGCAGGCTCCTGTTCCAGGTCGTCACCAACGCGTACGAGACCCAGAGCATCATCTACACCACCAACATCGAGTTCAGCGGATGGGGCAGGATCTTCGGCGACCCCAACATGGCCGCCGCGATCATCGACCGCACCGTCCACCACGGACGGATGATCCGCTTCGAGGGCGAATCCTGGCGCAAGACCCACGCCCTCATGCAATAACCAATGCAATAACCAACAACCAGCAGGACCGGCCAACGCCGAAACGGCCTGAAACCCGCCGCTCACATGGACTAAAAGAAACGCCGAAACGGCCTACTCCAACTTGACAAAACACACCCGTACCCGAGTACTGGCGCATGGCC # Right flank : AAGAACAGATTCGTAGGACACTGCGAAAAAACAGATAGGGGGCTTTCCGCCATCAACAGCGGAAAGCCCCCTATTCTTATGGTCTATCTGCCCTAATTAGAGCACCTCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTTTCCCACGGGAACTCAACGTCTGTGCGGCCGAAGTGGCCGTACGCGGCGGTCTTCAAGTAGATCGGGCGCTTCAGGTCGAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGATACCGGGTCGGCAACACCAATAGCGTAGGCGATTTGGATTTCGACCTTGTGGGCCAGGCCGGCAGCCACGATGTTCTTCGCAACCCAACGGGTGGCGTACGCGGCAGAACGGTCGACCTTGGACGGGTCCTTGCCGGAGAACGCGCCGCCACCATGA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11-574 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRBG01000016.1 Bifidobacterium longum subsp. longum strain W11 Contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 11 33 100.0 34 ................................. GAATCGTACGACTGGGACTTGGTGCTACTCGAAC 78 33 97.0 34 ................................T CCTGTATTGGAGGACGGGACCATTTTGTATACCA 145 33 100.0 32 ................................. CGGCGCCGACGTGAGCGACTGGCCCGAGACAG 210 33 100.0 34 ................................. CATCGTTGGCGACGAAAACATCCCCTTTACGCAC 277 33 97.0 33 ................................A GCAAATAATCAAAAAACCTGTTGGACCTCGGCA 343 33 100.0 33 ................................. GGCAGGCACCCGGAATTATCGCCCGCTTGGAAG 409 33 100.0 32 ................................. AACTGGCACAGCAGGAGCTCGCGCAGCCCGTT 474 33 100.0 35 ................................. AATGTGGGCTGCCAGCCGGTAAAGGCGTTGGCATC 542 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 9 33 99.3 34 GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Left flank : TATTTGTTGGG # Right flank : CTAATCTCGTAGGCCATGAGGGGCACCGGCTGTTTTGCTTCAATGTTTGTTCGACAGGTTCGGCAGTGTTTTTCCGTAGTGTGGGCTGATGGTTTTCCCCGGTGTCGTCATCGTTTCCCGGTGATGTGAGAGGCATCGGTGCCGCCGCCTGTATATTCCCGAGTTGCCAATCGGTTTTGATTCGGCCGGTTGCCGCCGGCCGGCGCTCGGGAAGGAAAGGAACATGGCGATACCGATGCCCATTGTGCAAGATATCAGGAGACTCGACCGGCAGGGAATGTCGCGCGCGCAGATAGCGCGGCGTCTTCACGTGGATCGCGGGACGGTCGCGAAGTACGCGGATATGGAGGATTGCTCGCCCAAGCCGAAGGCGGATCGCAGGTACGGGTCGAAGATCGACCCGTACGCGCATCTGGTGGACGAGTGGCTGGAGGCCGATCGTCTGCTGCCCAGGAAGCAGCGGCACACGATCAGGCGCGTGCACGACCGTCTGCTGGCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,1.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3205-3765 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRBG01000016.1 Bifidobacterium longum subsp. longum strain W11 Contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 3205 33 100.0 34 ................................. GTGCCGCGTCGTAGTCGATGGGCATTCCGCACAG 3272 33 97.0 33 ................................G ATGATGATCTGGACGAGCTGTCGGAGCGCATGG 3338 33 97.0 33 ................................A TCACCGGTACGTTGTTGCCTGCGGTGCAGGCGA 3404 33 97.0 32 ................................A GGGGGCGCGGCCCATAGTCCTTAGGTTCGAAC 3469 33 100.0 35 ................................. GAGCGGCGCGTCCGCCATCGATGAGGGTGCCTATA 3537 33 100.0 33 ................................. GGCAGGAAAACCACCTCGGATTCACCACCGTCG 3603 33 97.0 32 ................................A CGTCCGGCTGGAGGATAAGCGAGCTCACGGTG 3668 33 100.0 32 ................................. CCGGGTATGACGTTGAGCCCGCTGTCGAGTTC 3733 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= =================================== ================== 9 33 98.3 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATT # Left flank : TCGCCTGCGAGCGGGGCGTCCCGGTGCGCTTCTTCACCGCGACCGGACTGCTCATGCGTCTGCGCCGCGCCCAGCAGGAGAACCGGCTCGACCGGGAACTCGCGAGCATCGGCAAGGCCCGACTTCTCATCATCGACGAGTTCGGCTACCTGCCCATAGACGAGGAGGGCAGCAGGCTCCTCTTCCAGATCATTTCCGATTCCTACGAGACAAGGAGCATCATCTACACCACCAACATCGAATTCAGCGGATGGGGACGCGTGCTCGGCGACAAGAACATGGCCGCCGCCCTCATCGACCGCACCGTCCACCACGGACGGCTCATCAGATTCGAGGGCCGCTCCTACCGAAGCGAACACGCCCTCATGACCAAATAACCAACACAACGCAGACAGGCAGCGGCCGATACCGCACACCCTGCGGAAAACCCGCTGCCTACACTGCGGAAAAACACCGCTCACAAAGCGGACGCCAACTTGCTAAAACACACACCGACTTCA # Right flank : TGTCGTATGGGGATGGATCGCGGCCGACGTTGAGTCGCACCCCACTGGGGTGCGTGGATTG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 326745-327041 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRBG01000014.1 Bifidobacterium longum subsp. longum strain W11 Contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 326745 33 97.0 32 ................................A CCCCCAGGCAGCGCGTGCAGGCGCTGGAGGAG 326810 33 97.0 32 ................................C CAAAAAGTCCCCTTTAAAGTTGCGAATCGCCT 326875 33 100.0 35 ................................. AACATTGGCTATGCTCCTTGCATGATTGCTTGATT 326943 33 100.0 33 ................................. TCTCCGCTGGTGCGCCATACCTTGTACAGTCGG 327009 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= =================================== ================== 5 33 98.2 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATG # Left flank : ACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAAACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGCAAGACCAAGGCGGGTAAAACGAGGTAGGACAGTATAGGACGCCACGATTAAAATTGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTTCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGGTGGAGCTTCCATATTATGGAATGCTATGCCCATTCTTGCA # Right flank : ATCGGTGGTGATTTGTGTGAGTCAGCACATTTCGTCGCACCCCACTGGGGTGCGTGGATTG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //