Array 1 1460-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEV01000023.1 Clostridium sp. AM54-37XD AM54-37XD.Scaf23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1459 36 100.0 30 .................................... TTCGTCGCAAACGTCCTTGATTGCATCAAA 1393 36 100.0 30 .................................... GCATTTCTTCCCATTCATTAATTATTTTTA 1327 36 100.0 30 .................................... ATGACGAATGGTATAGTATGGTCGCATCGC 1261 36 100.0 30 .................................... GTGACATATTCGATAAAATCCATGAACAGC 1195 36 100.0 31 .................................... GGCGAAAACTCACTCGCAATTGTAACGGATG 1128 36 100.0 30 .................................... ATAATGTATACATCATTGAGCGGTCAGAGA 1062 36 100.0 30 .................................... TGATTATCATGATAATTACAGTCTTCTTTC 996 36 100.0 29 .................................... TGATTATTTCCGTGAACGGTGCAATTTTG 931 36 100.0 30 .................................... GTATTCTATGTTGAGTCGTATATTGATGGT 865 36 100.0 30 .................................... TTTTATAGTCTGCTGAGCCATTTTACCGTT 799 36 100.0 30 .................................... TCAGCACCCATCGTCTGAGCGACAGCATTA 733 36 100.0 30 .................................... GTGATAACAATATATATACATATACTAATA 667 36 100.0 29 .................................... CCATTTTTTACCTCCTTAAGTTTCACAGT 602 36 100.0 30 .................................... AAAGTAACAAAGCTGTTGTACGCTAGGATA 536 36 100.0 29 .................................... TTTATAAATTCCTCCTTTTGTTTCACTGT 471 36 100.0 30 .................................... ATAGTCGTGTGAATAAAATTCCTTGTGTTA 405 36 100.0 30 .................................... CAATCACCATAATTACAGTACATGTATTCT 339 36 100.0 29 .................................... CAACTCTCCGTACTGTCCAATCAGGATCG 274 36 100.0 30 .................................... TCAATCTTTCTAATTTTTTCAGGCAAGTCA 208 36 100.0 30 .................................... CAAACTGATGATAAATGCAAGGTGATTATA 142 36 100.0 30 .................................... TCATCACCATAATGAACAGTTGTTTCCAAA 76 36 100.0 0 .................................... - Deletion [41] 40 33 91.7 0 ---................................. | Deletion [38] ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.6 29 GTTTGAGAGTCTTGTAAGTGAATAAGTGAATCAAAC # Left flank : AACGATGTAGTTTGAGAGTCTTGT # Right flank : CTCGTAGT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTCTTGTAAGTGAATAAGTGAATCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 67051-67614 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEV01000013.1 Clostridium sp. AM54-37XD AM54-37XD.Scaf13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 67051 36 100.0 30 .................................... TTTTCTGAGTTAAATATTCGCCCTGATTTG 67117 36 100.0 29 .................................... TTACTGACAGTTTAGTTAAAAGTGGCTCT 67182 36 100.0 29 .................................... ATCGGTTACAGTTGCTAGCGAATCCTTGC 67247 36 100.0 30 .................................... ATGTAAATACAGAAATATCAGCAATGCTGA 67313 36 100.0 30 .................................... AAATTACAACTACGCATATAGTACAAGCAG 67379 36 100.0 31 .................................... TTGAGCCCCGCTACCTAGTGCTTTTTTTTAT 67446 36 100.0 30 .................................... GGGTCTATCTTTTGTTTTGTACCTGTTACA 67512 36 100.0 31 .................................... CTGGCTACCATTTCCGAGGGGTTTTTTGATC 67579 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 100.0 30 GTTTGAGAGTCTTGTAAGTGAATAAGTGAATCAAAC # Left flank : AAAGTAATCCAGAAGTTATACCAAGAGATTGATAATTCTGCAAATGACTGGTTTGTTCAGGAAATGGCAGAGTTGCAAGGACAGATTGTTTCAATGATCTCACAGGCAATAGAGACCGTGCCATATGATGTTACATTCGATTTTGAACAGAATTTTCAGGGGTTGTTAAAGTTATATAATGTGCATATTGATAATGAGTGCGATTCATTATTAGAGAAGATAAGTAATTATATTAAAACTCTTCATCGGATATGTCATATATCTGTATTCATATTTGTGAATCTGAAGACCTATTTATCTGAAAATGAATTGAAAGAATTATATATAAGCTGTTTTTATGAAAAAATCCATCTGATTTTATTCGAAAATCAGCAGAAGAAATGTTTGGAATATGAAAAATGTATATTCTTGATAAAGAATATTGTATAATAGAATCAGATTAACTTACAGCATATGTCTATATGTTTAACTCGGTGAGAACCTCATTTTTACAATTTGGG # Right flank : ATCGGGAACCAACCGATACCTGCCACTAGTTTGAGAGTCTTGTAAGTGAATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTCTTGTAAGTGAATAAGTGAATCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 10-1296 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEV01000019.1 Clostridium sp. AM54-37XD AM54-37XD.Scaf19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 10 36 100.0 30 .................................... TGTAGCAACTGTTTCTGAGCCTGTTTTTAA 76 36 100.0 30 .................................... CGTCAACATTCATTGAAAGGATCTGGTCCA 142 36 100.0 30 .................................... TCCGGTTGTTAGCCGGATATTCTCGCCCGC 208 36 100.0 31 .................................... CCAGCACAGGGGATATAATTAGATTTGAAGA 275 36 100.0 30 .................................... TTTAAGGGAGATTTAAACATGGAAGAAAGA 341 36 100.0 30 .................................... TTCCGGATACATCCCATTCCTCTTCTGCAA 407 36 100.0 30 .................................... ATTCCTCATTAAAAGTGTTTGCGCGTACGT 473 36 100.0 30 .................................... TGTGATGGTGCGGGATGTTGAAGAGACAGA 539 36 100.0 30 .................................... ATCACACACTCGTAAATTATATTCTTGATA 605 36 100.0 30 .................................... TCTGTGATATGAATAGGCTGCTCGTCTACA 671 36 100.0 30 .................................... TTGAATGATCCATCTAATAAGATTCCAGAA 737 36 100.0 30 .................................... TCAGATACCTTTTTCTTTGATAAAGCCTTT 803 36 100.0 29 .................................... TAGCGGCGTTTCAAATGAGTGGCAGCGTC 868 36 100.0 30 .................................... ACAACAAAGTCGTATACTGGTGATGCTGAC 934 36 97.2 34 ..................................C. TGCGGTAATTACCTGTAAAATTCACAAGTGACTG G [961] 1005 36 97.2 29 ..................................C. ACATCGGGTCTTCAATGATGTCTGCAAGT T [1010] 1071 36 100.0 30 .................................... AATGTTACAAAACCATATCTGATTTTGCAA 1137 36 100.0 30 .................................... CTAAAATCCGATAAGTAATTGCCAGATTCT 1203 36 88.9 18 ...........C..................G..G.T GGAAGGACGATACACTTT TA,CT [1226,1230] Deletion [1261] 1261 36 75.0 0 ..C......C.........A.....TAA..AG...A | ========== ====== ====== ====== ==================================== ================================== ================== 20 36 97.9 30 GTTTGAGAGTCTTGTAAGTGAATAAGTGAATCAAAC # Left flank : GTAGTTCAAG # Right flank : AAAATAAGAAAGGAATTAATTAATGGATAATAATCAAATAACAAATAATCAGTTTAAAGGAATTATAAAGATGATTATAGCACTCATAAAAAGTGATATACCTAAGGAAGAGTTACTAGAATATTTAACTGATTTGGTTGAAGAATAATGTATATATGAGTGTAAACAAAGTGTATGTTGAAAGATATGTAAGAACATGACTATATAGATATAGCAGAATGCTATTTCCCCCCACCACAGCCTTACTTACCACATCCCCTATATGCTATTCGGATTCTGTGGTGGGGAGAGCTTTGTTCTGGTTCCTTTTTATTACATGCTAGAATGTCTTCTGCAGAAATTCTGCATGCGATTTATAGTAGCGATAGTATTCGGTACCCTTTTCCTGACCATACTTGGTTACGAAGAGGTTGTGAATTTCCCGAAGGTTTGCTTTATGCGGGTATAGTTTTTTATAGAAATCATCAATGAGAGCAATACCGGCATTAGAGTAAACAATC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTCTTGTAAGTGAATAAGTGAATCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //