Array 1 948125-949617 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023299.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4334 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 948125 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 948186 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 948247 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 948308 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 948369 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 948430 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 948491 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 948552 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 948613 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 948674 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 948735 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 948796 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 948857 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 948918 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 948979 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 949040 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 949102 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 949163 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 949224 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 949285 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 949346 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 949407 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 949468 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 949529 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 949590 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 965749-967713 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023299.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4334 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 965749 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 965810 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 965871 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 965932 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 965993 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 966054 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 966115 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 966177 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 966238 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 966299 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 966360 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 966421 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 966482 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 966543 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 966604 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966665 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966726 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 966787 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 966848 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 966909 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 966970 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 967032 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 967135 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 967196 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 967257 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 967318 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 967379 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 967440 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 967501 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 967562 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 967623 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 967684 29 96.6 0 A............................ | A [967710] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //