Array 1 214682-215807 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOT01000004.1 Salmonella enterica strain BCW_4899 NODE_4_length_396127_cov_4.45954, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 214682 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 214743 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 214804 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 214865 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 214926 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 214987 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 215048 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 215109 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 215170 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 215231 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 215292 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 215353 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 215414 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 215475 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 215536 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 215597 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 215658 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 215719 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 215780 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232066-234172 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOT01000004.1 Salmonella enterica strain BCW_4899 NODE_4_length_396127_cov_4.45954, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 232066 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 232127 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 232188 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 232249 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 232311 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 232372 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 232433 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 232494 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 232555 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 232616 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 232677 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 232738 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 232799 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 232860 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 232921 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 232982 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 233044 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 233105 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 233167 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 233228 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 233289 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 233350 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 233411 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 233472 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 233533 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 233594 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 233655 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 233716 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 233777 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 233838 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 233899 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 233960 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 234021 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 234082 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 234143 29 89.7 0 A...........TC............... | A [234169] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //