Array 1 6893-5471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIU010000006.1 Listeria seeligeri strain FSL W9-0822 NODE_6_length_125447_cov_91.792710, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6892 36 100.0 30 .................................... GAGACGCAGCCATGAACCTTTGGAGCCTTG 6826 36 100.0 30 .................................... TAACGAAGCCAGCGGAAATTATAGATCCAG 6760 36 100.0 30 .................................... ATTGTTTAAGAAATTGGCACAAACACAAGG 6694 36 100.0 30 .................................... CTTATATCAATCTCTCCTATTTCCCCTATT 6628 36 100.0 30 .................................... TAAAAGTTTTTTCAAACGATCCACCTAGCT 6562 36 100.0 30 .................................... GATATTTCTAATAAAAATCAAACAGCTACT 6496 36 100.0 30 .................................... AATTAATTAATGAGTACAGAGGAGCTTTAC 6430 36 100.0 30 .................................... TAAATATTCGCCTGCCATCGGTCAAAGTGA 6364 36 100.0 30 .................................... AACCACTTCGCCACAAATTCTGGCACAGTC 6298 36 100.0 30 .................................... CTCAACCAACAGGTAGTAATATTAAAGCGG 6232 36 100.0 30 .................................... AAGCTCAATCAAAATACCTCTCTCGTCATC 6166 36 100.0 30 .................................... CGAGCTTCATAGACTTCTCCGTCTATCTTG 6100 36 100.0 30 .................................... TGAAGATATATTAGGCGTTACATCAGTTAA 6034 36 100.0 30 .................................... CATTTATCGTTTTTCGGAAATGCACAAAGG 5968 36 100.0 30 .................................... CACAGAAGACCTGAAAGAAACAGGAATAGT 5902 36 100.0 30 .................................... CGGAGAAAAAAGTGAACTCTTAAAGATGTA 5836 36 100.0 30 .................................... TAAAAGACTTTCTATCTGGTATGTGGGAAG 5770 36 100.0 30 .................................... CAAGCTCAAGATATTTTATATACAAAAGAA 5704 36 100.0 30 .................................... CACATACATTTCAGACATCGAGTTGGAAAT 5638 36 100.0 30 .................................... CTGAAAGAGCCAAGAGCCTCTGTCTGTTGT 5572 36 100.0 30 .................................... TTCTTGCTCTTCTAACAATCCAAGCGCTTC 5506 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGCGAGGATGAACTACAAAAGTAATATCCTTTACATCTATTTTTTTCTATATTTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTTTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCAATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCACCTGAGAAACTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 195269-194586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIU010000002.1 Listeria seeligeri strain FSL W9-0822 NODE_2_length_417816_cov_77.731497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 195268 29 100.0 40 ............................. TCAGTCGTTCGGTTGTAGTAACATAGCGCTCTACTTCTTG 195199 29 96.6 35 T............................ TAGTTTTGCCACATCATATTGTCCTTTCAATCCCG 195135 29 96.6 36 T............................ GCCGGAACAAAATTAGAAGTTGTGAACGGTGAACGG 195070 29 96.6 37 T............................ GAGATAATGTTACTCATACCAGTAATTAGTCCGGAAG 195004 29 96.6 37 .....................G....... TGTCTAGCTGATTACCAGCCAGAATCAGGGTGTAAGG 194938 29 100.0 34 ............................. CTTTTCTACCAAGTTTTTATAGGCTTTTTGCCTT 194875 29 100.0 36 ............................. ACAGGAAAGGGAGAAACGTCATTAGCTGGGCTAAAG 194810 29 100.0 35 ............................. TTTGCTGGATGATTTGGCTCTATATCCAGATGACA 194746 29 100.0 37 ............................. ACTACTGATTGCGCTTTCATGGTATGATCGTATAAAG 194680 29 100.0 37 ............................. GTGGTCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 194614 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 96.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCTTCAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACTCATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGACTGATGAAAAAACATCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGATCGACAGAAACGCGGAAAGCCTTGGGGGAGAATGGTTTTCGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTCATTCAAAAACCACCACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGGGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTCTAGTAGGGTGTGGAAGTGAAGAAGCTTCAAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAATC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.71%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 206366-205047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIU010000002.1 Listeria seeligeri strain FSL W9-0822 NODE_2_length_417816_cov_77.731497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 206365 29 100.0 36 ............................. TTCCAGAACGCTTTATACCAGTTGCGCCAGTTGACA 206300 29 100.0 34 ............................. TTCGATACCAATTCATTTCACTTAGTCGTTTTTG 206237 29 100.0 34 ............................. GTAGCAGTAGCACCGCGTAAAAGACGGCGGCCAT 206174 29 100.0 34 ............................. GTGATTGGGTCAGTTCTATCCCCCCAATCGCTCG 206111 29 100.0 36 ............................. TCTTCTGCTGTTTCAAAAGTAGATATAGTCATAGGC 206046 29 100.0 35 ............................. TACAACACTTATGAATGGAATGACATGTATGGCCG 205982 29 100.0 36 ............................. ACAACAGCTGGTTTAAGTGATAGCGAGCTAGTAAAA 205917 29 100.0 34 ............................. CATTAATTTTCAAATGGAATGAGGAACAAATAAA 205854 29 100.0 37 ............................. ACCGCCAAGTAGGAGTTGTAAACACTTGTCTCGCCTA 205788 29 100.0 36 ............................. AGAGGCATCACCCCCGTTCCTGGAGATTTAGCCACC 205723 29 100.0 35 ............................. TACTGAACCATACCCCGAACTTTTAACAACATGGT 205659 29 100.0 35 ............................. AAAGTATCTTTTTCTTTAGACGATGACGATTTTAT 205595 29 100.0 35 ............................. ACTTTATAGAACTGTCGCCTATTTCTCCTTGTAAA 205531 29 100.0 37 ............................. ATCTTTAGGAATTTAGTTACTCGCTTAGTTGCTTTCT 205465 29 100.0 37 ............................. TCGAGACTTAGACGACCATCTTCAATGGCTTTCACCA 205399 29 100.0 35 ............................. ATAGATGCAATAATGTTATCTACCGGATTCATTAT 205335 29 100.0 35 ............................. GTGCGGGCAGTTTCGTCACCGTGACCCACAACATC 205271 29 100.0 37 ............................. GTTTGAGCGGTGAATTTAGCAGTGACATCTTGCACAG 205205 29 100.0 36 ............................. GGAGAATGACTCGCAATAAAATTGGCATAATCTTTT 205140 29 96.6 35 ....A........................ ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 205076 29 86.2 0 ........C....C..A...........G | T [205049] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.2 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCACAGATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTATGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGATATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGCCGG # Right flank : CCCTTCAATCATGCTAGTAAAGTTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAATAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 213063-212580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIU010000002.1 Listeria seeligeri strain FSL W9-0822 NODE_2_length_417816_cov_77.731497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 213062 29 100.0 35 ............................. AAATTAACAATTAATGAAAGCATCATGTCTACATC 212998 29 100.0 34 ............................. CTGTGTCATGAATAGCAGAATAAGAGGCCCTCGC 212935 29 100.0 38 ............................. CATGATGAGAGTATGCTCAATATCATTGTCTTGATTGT 212868 29 100.0 34 ............................. CTATGATATCTTCAAGGGCATATCGACAAGTATC 212805 29 100.0 37 ............................. TGTTAATATTATCCAGAGGTGATACTGTTGGAATTTC 212739 29 100.0 38 ............................. ATGCCTCTTACGAACAAGGAAAGAGAATGCCGGATACA 212672 29 100.0 35 ............................. TGGGGACTGTACAGGCTAACATGGCATATATTTAT 212608 29 96.6 0 ............A................ | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 99.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAAATTAGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGGCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTACTATTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGGCATGACGGGGATAAAGTAAGTTCTATC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //