Array 1 3973020-3972396 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016174.1 Amycolatopsis orientalis strain B-37 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3973019 29 96.6 32 ............................C ATGGCGGACAGCAGGTCCGCCGCGGAGTCGGC 3972958 29 100.0 32 ............................. CCGTCGATCGCCGTCTGCTGGCGGCCCGTCGT 3972897 29 100.0 32 ............................. CCCTTGGCGCCCGCGGCACACTCGAGATCCTC 3972836 29 96.6 32 ............................T ACTGTGCCCGCGGTGCCGGACCGAGATCGAGA 3972775 29 79.3 32 .........A.C.AG..........C..C ACGGCCAGAGATGGCACAGTCTGGTGAGCACG 3972714 29 82.8 32 .............AG.....AC......C ACGATGATGTACCGGTCGACGGTGGCCACCGC 3972653 28 86.2 32 ...A.........-.......C......C GGTCGTGTGCTCGTCGGCGATCTCCCTGTTGA 3972593 28 86.2 33 .........-.......A...C....T.. CGGGTTCACGCCCAGCAGGGCGTACCAACCGCC A,C [3972577,3972580] 3972530 29 89.7 33 ...........A..............T.C CAGTAGCCAGTCGTGCTGACCTTCAACCTCGAC 3972468 28 82.8 16 ......T....A......A..-...C... GCAAACCAGCGGTCGA Deletion [3972425] 3972424 29 86.2 0 .............AG......C......C | ========== ====== ====== ====== ============================= ================================= ================== 11 29 89.7 31 GTCGTCCCCGCGCGAGCGGGGTTGGTCCG # Left flank : CTGCTCGCCGACTTCCTCAGCCGCTGGTACGGCCCCGACTACCGCGGCGTCCTCAACGTCGTCGCCGACGTCGACACCCTCAACTACGGCCTCAATCTGCTCAACACCCAGCTCATGTACGGATGCCTGCTCACCACCGATCGCGTCGCCGACGCCGCCTCCGAAGGCCGCCTCCCCGGCAACAACCTCCGCAAACTCGCCCTCACCGACGACTTTAACCCCCAACTCGACATCGTCACCGGCATCTTCGCCCGCCCCGGCGAACGCCAGCGCTACGCCGACGACCACCCGCTCAGCGCACTATGGAACGCCTTCGCAGCCGCATCCCCTACCCGACCGAACGGCCAACCGCAGCGAGGCAACCTGCATGAATGACCTTGTCGGCCCGTGCTCAATTGCCGCGCCAACCAGGTTGTCCGTACTCGGGATTGAGCTAGCCCACGCTTCGCCGGGCAATCAATTTTCACTACAATGATCTCCAAAGACCCAGGTCAACAAGT # Right flank : GTGCCCCGCATCAGCCGGGCACTGCAAGCAACTCTCGGAACTCGATCTAATTTCCGCGCAAGGCCTGATCAGCTGGGACGATCTCGGATGGCGCCAATTGTCTTCCTGAGATGCCGCTCCAGTTGCCCTGCTCGAAACTCCACCAACTACCGGATCTATCGCTGATCGCGTCAGAACGAGGGCCCCGGCTCGATGTTCTCTGCAAGAGCGGCCAAAGCCTGATGCTCCGCGGCTGGCCGAAACGCCGTCCTCCGACGAACCGCTTCTTTGGCAGCCTTCGACGCCGAGTAGTCGTCGCTCAGCTGGCCGGGAGCCCTGAGTTCACTGATCCGCGTAACCCATTCGGCGAGGTCGTCGGCACCGTCTGGGACCGGCCCCAGAACCTGAAGTGCTTCCTCGGCTGAGCGGGGCGTCAAGGTCAGCGCGCCGACGGTGTCGAACCACAGGCCATACGCAAGCCCGAGACGGTAGTCCCGCGGCCAAGTGTTCAGGTCGTCGGA # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGAGCGGGGTTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3979021-3978139 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016174.1 Amycolatopsis orientalis strain B-37 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3979020 29 86.2 32 ..............A.....CC...C... GGCAACACGAGCTGCCCCGGGCCAAAGACGTG 3978959 29 93.1 32 ..............A...........G.. AGGCCTGGATTTCGACGGAGGGCCCGGCCTCG 3978898 29 100.0 32 ............................. TCGTAGGAATGGGCCTGGAGGACGCTGGACGT 3978837 29 82.8 31 .C.............A......C.AC... GAGGTCAACTCGGACTTGGAGATCCGCCGAT C [3978821] 3978776 29 89.7 32 ......A..............C......G GTCGATGTTCAGCGCAAGAACGCGGTCCGCTA 3978715 29 86.2 32 .............GA......C......A GTCCGTGACGCGCTGGCAAGGCGGAAACCCGG 3978654 29 86.2 32 ...T.............A...C......T TTGACGGCCTTGAACAGCTGGTTTTCGCTCTT 3978593 29 86.2 32 .C.T....T............C....... GGCTCGTACTCGGCCCTGGTGGACAAGGTGCC 3978532 29 82.8 32 ...........A.GA......C..A.... CAGTAGTCGTACTCTTGCGGGAGCTGTGCTGG 3978471 29 79.3 32 ..GC.........GA......C.....G. AGGTGCACCGTGTACGGGCCTGCGATCGACAG 3978410 29 75.9 32 ..GC.T..A....GA......C....... AACTCGCTCCGCCGGAAGGAGCCATGACGAGT 3978349 29 79.3 32 ..GC.....A...GA......C....... ATCGTCAGGCCGGAGAAGTCGAGCCCGGCGAA 3978288 29 82.8 32 ..GC.............A...C......G GAGAGCACCGTGACCACGACCGAAGCCGTGCT 3978227 28 89.7 32 ...T.............-...C....... ACCTCGACGTGCGCGCCTGGCTTGGCGCCGGT 3978167 29 93.1 0 ...T.................C....... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 86.2 32 GTCGTCCCCGCGCAGGCGGGGTTGGTCCC # Left flank : ACCAAACTGAACGAAAACCAGCAGTATGATCTTCAAAGGTCCAGGTCAATTAGTGTCGCCCCGCGCGAGCGGGGTTGGTCCCGACATCAACCTCACCAGCGTCCGCACGATCCCGTCGTCCCCGCGCGAGCGGGGTTGGTCCTTGGAAGGCGCAAGCGGCCAGACCGATTCCCTAAACACAAAAGAGCCAGGGCCGGGAGGAGCGGGCTTTGCGACCCCGCTCGGACTCGAACCAAGAACCCTCCGGTTAACTGGTTCGAGTCCTTTCGAGTTGTTCTCAGTCGATCTAGCTGGGATGTTGGTGATCACTCATCGCTCTCAGTCTGTGTCGGTCGGCCTCGTTCGACCTGCAATTTCGCCCTGAAATCGCCCTAGTTCCTGCCGGAGCAGCTAGCCGAGGCAAGCTGGACCACCTGATCAAGGATTGTGATCCGACGCGACGGCAACCAAACTAAATGAAAATCGCCAGTATGATCTTCAAACAACCAGGTCAAAGTAGT # Right flank : GGCTACTGTGGCAACGCGTCATCGACATGGTCAAAACAGGACGCGCCATCATGGTCTACAACGCAGACAACGAACAAGGACTCGACTTCGACGGCATCAACCTCATGCTCCGACCAGCCCCACCGCAGACACCCAGCACCGACGCCCGCAAGACCGGCTGGAGCAACGCCAGCAAACGACGCAGGTACGAAACCGCTAGTGCAGCCTCAAAGTGAACAAGAAACACCATTACGGCACCTAAACCTGCAGGTCAGCAAGTGTGATCCCCGCGCGAGCGGGGCTGGTCCGGTGAGCGACCAGCCCCACAGCGGGATGCTCAGGTGCTCCTCGCGCGGGCGGGGCTGGTTCCCGGCAGCTTCGCGAACGCCTCGGTGATCGCGGCGTCTTCCCCGCGCAGGCGGGGCTGGTCCGGCTGTGCAGGAGGCAGCACCGGTGTCCATGTCCGTCTTCCCCGCCCAGGCGGGGGTAGTCCCGGCACCTGGGCGCTTTCGTGGCCGCGG # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCAGGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [7-8] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3991730-3989415 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016174.1 Amycolatopsis orientalis strain B-37 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================================================== ================== 3991729 29 86.2 32 A............AT.............C CGGACAGCCGGCCTGGCAGCCCCAACAGCCCG 3991668 29 93.1 32 ...........A................T GGGGCAACGATCACCAGAACCACCCGCATCAC 3991607 29 79.3 32 AG.........A.AG.....A........ TGCATTTCGTCAGCGCGGCCGGAGTAGTCGCC 3991546 29 86.2 32 ...T.........AT.....T........ AAGTCCGCGAGCGCCTGCAACCTGTCGCGCGT 3991485 29 100.0 32 ............................. CAGTACGGGTACAACGCCGCCGTTGAGACGGC 3991424 28 93.1 31 ........-...................C GGCGGTACCGCATGTGCTGGCGACTCCGGTG 3991365 29 82.8 32 .............TG......C.....TC GTCGGCAAGCTCGTCGTCGGCGAGATCTCGGC TC [3991361] 3991302 29 86.2 32 .C.A.........A.......A....... GCGGCTCGCATTTCGGCCAGGATCGCGACCAG 3991241 29 82.8 31 A........A.A..T.............C TGGAGCTGTCCGCCGGGGCGACCCCAGTTTC 3991181 29 86.2 32 ..........T.TC.......C....... ACTATGCCCTCACCGCACGCCGGGCACGTAGC 3991120 29 79.3 30 T........TT..AG.............T CGCCAGCGGCGACCCGGCGCTGGTAGATCC C [3991104] 3991059 28 79.3 14 .....-.G.A......A....C.A..... ATTCCTAAACACGA Deletion [3991018] 3991017 29 51.7 143 AG.AG.T.A.GC..G....TC.G..C.T. TACTCCCCGCTCGGACTCGATCCAAGAACCCCTCCGGTTAACTGGTTCGAGTCCTATTCAGTCGACCCAGCCGGGACGTTTGCAATCGCTCATGCTCTCAGCCGAGGTCAATCGACTGCAATTTCGCCCTTAAATTGCCTCCA 3990845 29 62.1 90 ..TCCTG....T...CT.....AA...G. ACTTACCTAATCAGGATCATGTGCAGGACGCAACGCCCGAGACTGAACATTATTCTCCAGTATGGTCTTCAAATAGCCAGGTCAATTAGT GC [3990833] 3990724 28 82.8 32 ..........-.TA..T...........C TTGTAGATGCCAACGGTTTTGAGGTCCGCAAC 3990664 29 86.2 32 .............AT.........C...C TTGTCCATGGCCGCGGTGCCGTCTTCTCCGGC 3990603 29 93.1 32 ............T.T.............. CCTTCAGCACGTCAGTGTGAGCTGACGGGTTC 3990542 29 96.6 32 ............................C GCGATCCGCGCGCTGGTCACCTCCAACACCGG 3990481 29 93.1 32 .............A.......C....... GCGTCTGGGTTGTCGCGCAGGTACGCGGCGAA 3990420 29 82.8 32 .............A...A...C.T....C GAGGTCAAAGCCCTCGCGACCGGAAACCCGCT 3990359 29 82.8 32 ...........A.AG...A..C....... TACGTCGAGTGGCTGTTCGACACCTGAACGTC 3990298 29 86.2 32 .............AG....A.C....... GCCTCCTGCACGCCGATCCCGGCCCATTCCAG 3990237 29 86.2 32 .............AG..T..........C GGAAGAAGCCGACGCGACAGAGCAAGCGTGGC 3990176 29 96.6 32 ..................A.......... TACTCGTCGATCTCGGTGTCCTCGGCGTTCTG 3990115 29 96.6 32 .C........................... GTCTCGCTGTGGGTTTCGCCGTTGTCGCCGCG 3990054 29 93.1 32 .........A...............C... GCCGCGCGGTCGCCGACAGACGGCTTCTCCGG A [3990044] 3989992 28 75.9 32 .......T...A.AG..-...C......A TGCCGTGAGCTCCGCCCGGCGATCTCGCTTGT 3989932 29 86.2 32 ......A......AG......C....... CGCTCGCCGCCCCGGGGCGCATCCGGGTGGAC 3989871 29 82.8 32 .............AG..T......AC... GCACCGCATCCGGGCGAGAAAAACAAGCCATC 3989810 28 79.3 33 .C......-..A.........C.A....C AAGCAGGCCGCCGACGCGTACCGGTCCGCGAAA 3989749 29 79.3 32 ...C..............A..C..C..TC CTGGTCAAGATGTACGCCCGTATGCTTCTAAC 3989688 29 75.9 31 A..........A.ATA....AC....... GCTTACGCTAGCTCGAGCACGAACTCGCCAT 3989628 29 82.8 31 C.........T...G......C.T..... CGGTCGTTGCCGATCCGCAGGATCAGCTCGC 3989567 29 86.2 32 .....A...A...A....T.......... AAGCGGTTGTCGCACAGCCGGATACCGTTCGG 3989506 29 86.2 33 ...A.........AG.....A........ TCTCACAACATCGATGACCGCGACAGCAGGCGC T [3989497] 3989443 29 79.3 0 .A......AA......T........C..A | ========== ====== ====== ====== ============================= =============================================================================================================================================== ================== 36 29 84.4 36 GTCGTCCCCGCGCGAGCGGGGTTGGTCCG # Left flank : CGCGTCTGGGACACGACCAGCGTGGTCGTGTCTCCTCGCAGGCGGGCGGGTTGGCTAAACGAGCCGCTGAGGGTGTCGCCGTCAATACGGAAGTCCCTTTACTCCTAAGTCCGGGCGGGTGCGAGGCTGAGGAGTCCGCATCCGTAGGCCTTGGCGCGCCCGATTCCGGTGACAAGTGCGTCGCTGAACGCGGCTGGGTCGGTGATGACGAGGTGGCCGTCGTACCGGACAGGTTCGACGGTGATCTTCCCGGTCTCTGCCTTCCGTCCGGCGATAGTCGCCATCGGTGTTGGGACATTTGCGAACGCTCATGTTCTCAGTCGGCGTCCGTCGACCTTGTTCGACCTGCAATTTCGCCCTTGAATCGCCCCCTAGTTCCCGCCAAACCAGCTAGCCCCAGGCAAGCCGGACCACCTGATCAAGCATTGTGATCCGACGCGACAGCAACCAAACTGAATGAAGTTCGCCAGTTTGATCCTCAAACAACCAGGTCAATTAGT # Right flank : GACGCGTGGACGATCGTGACCACCGCGCACTGCCGGTTACGCCGAAAGAGCTAGTTCACGGCTGCCTTCAGACCACGACGCGAAGGGGTGTCCTGCGCATGCAGGGTTGATCCGCTGAGGTGGTCATGGGAATCTCCCGCGAGTTCCCCGCGCCGAAGCATTCGGTCGAACGGGAGCACAAACCGTCGGCGACCGTTCAACTTTCACGCAAGCGGGGTTGGCCCTGCCCAACCGGTGTCCTTGATCGTCCATTTGTAGCTGTCCCCGCATAGGCGGGGTTGACCGCCTTACCAGGAAGCGGTCGAGGAGTCCTCGTCGAACCGCTTCCGCTCTAGCTCCGGGCGGGTGCGAGGCTGAGGAGTCCGCATCCGTAGGCCTTGGCGCGCCCGATTCCGGTGACAAGTGCGTCGCTGAACGCGGCTGGGTCGGTGATGACGAGGTGGCCGTCGTACCGGACAGGTTCGACGGTGATCTTCCCGGTCTCTGCCTTCCGTCCGGCG # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.22, 5:-1.5, 6:0.25, 7:-0.43, 8:1, 9:0.06, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGAGCGGGGTTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [55-59] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //