Array 1 330756-330208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJQ010000001.1 Bifidobacterium simiarum strain SO2 Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 330755 36 100.0 28 .................................... GCTGTGGGAGCTACGCATTACCGCCACG 330691 36 100.0 28 .................................... GCCGCGGGATACCGATTTGTCATCACAT 330627 36 100.0 28 .................................... CGTTCCTAGCGGGTGGGTGTGTGAGGTC 330563 36 100.0 28 .................................... TCTCCTTTACCGTGGTCTTGTTTGGGGT 330499 36 100.0 28 .................................... GCCGCTATCGCATATGCGACCGCCTGGC 330435 36 100.0 28 .................................... ATGTAGCCGATGCGCACGTGGCTGATCG 330371 36 100.0 28 .................................... TGGGGACACCTGAAACCAGCAACAAGTC 330307 36 100.0 28 .................................... TAAGGTTTACTCTAGACCTACTCGGAGT 330243 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 9 36 100.0 28 CAAGTCTATCAAGAGGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGAACCGGATTGACCATTCCCAGCTCATTGAATGATTTCGCGCAACAGTTCGGTCTGTACTGCGAGAAAAAGATCGACCGGTTGCCGGTTCCGGAATATGTGGGGGCATGATGAAAACGGATGAGGATAGTGGTGGCATGTGGTGTCTGGTCATGTTTGATCTTCCTGTGGCGACGAAGCTGCAGAGAAAATATGCGACGGATTTTCGTAATTTGCTGCTTGATATGGGGTATTGCATGGTGCAGTTTTCCGTATATGCGCGGTATACGCCTACTCAGGCGGGGAATAGGGCTACGGTTCGTGCCATCAAGGATCATCTTCCGCCCAAAGGCATGGTGCGTGTTCTGCATATCAGCGACCATCAATGGTCGTCTGCTCTGAGATTTTCGGGTCTGCAACAGGATGAATCCAAGGAAACGCCCGAGGTATTTACGCTTTTTTGAATGGAAAAGCCCTTGAAACCGTTGAAAAATAACCCCTCCTGATGGGCTAT # Right flank : CTTTAAACCCATCCTTCCCGTAGAGGTTTGAATTTATCAAGGTGGTAATACTCTACTCGAACATTTCAGCTTCGATCTGCTGATCGGTCATGTTATGCAGTCTCTTCTCTTCCGCTTCGACCTTCGGATCTGGCCATGTGTGCGAATCGAAGACGCAACGGTATAACTCCCAATGCGTGCACAGTCGTACGAGGAGAACATGCTGGTGGATGACCTTGTATATCAGAAGCACGTCGTCTTCCACGTGACATTCCATGTATCCGGTAAGGCATCCTCTGCCGATCTTGAGGCGATGCGGACTGCAGGATTCGGGAACGCCGCCGTATTCCAGCAAATGGAAATCGAGCAGATCATAGACCGAATCGACCAGTATTGCCTGATATCTGCGTAGTCGTGCGATATCTGCATAAAACCAGTCGGTGGCATCGTATTCGATCATTCGGCGTCGACCTTATCGATGACAGCGCGAATGCTTGCCAGAAACTCTTCTTTGGAACGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAAGAGGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 146944-144651 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJQ010000003.1 Bifidobacterium simiarum strain SO2 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================================================================================================================= ================== 146943 36 100.0 36 .................................... TGGGTGTCGATTTCCGTCTGTGTGGCGAACGCGACG 146871 36 100.0 33 .................................... CCGACCGACACGCGCCGGCGGATCATGCGCGAC 146802 36 100.0 37 .................................... CTTAGGCCCCATCGTCAGTAGGATGAGCATCGGAAAC 146729 36 100.0 38 .................................... ATCCACAATGGCGAGAAGTCTCCGGTCCGCATGTCCGA 146655 36 100.0 35 .................................... TGGACCGAACATGAACTGTCCGAGTATGCGGGCGG 146584 36 100.0 36 .................................... AATCCATAGTTCCAGCTCGTTGCAAAACACGGTTGC 146512 36 100.0 39 .................................... CGGTGGGTTGCCTCATACGCGAACTCTGACACGGTGCAT 146437 36 100.0 36 .................................... GCGCTCAGCGTGTACATTGGCTGCTGCGTCGAAATG 146365 36 100.0 36 .................................... ATGGCGTTGAAGGCCGTCAACGCCGAAGACAAGAAA 146293 36 100.0 36 .................................... CTGCTCGACCAGATCGCACGCCGCGAATACCGGCTC 146221 36 100.0 37 .................................... TTTCGGACGAGCGCGGGCACGTAGTCGAGCAGCAGGT 146148 36 100.0 37 .................................... GTGGCGATCGTACCCAGCATGCAGGGTGTGGGCAAGG 146075 36 100.0 38 .................................... CGGAAGCCGGATGGTCGACTGACCGGCAAACGAGGATT 146001 36 100.0 38 .................................... ACGTCCGATAACTTCGCGGGCGTGCGTTTCTTCGACGG 145927 36 100.0 38 .................................... ACGCGAGATGACATGCCGGTCGTGCGTACGCAACGCAA 145853 36 100.0 34 .................................... ATCTACCGGGAGAAGCCTGAGCCGAAGCTGCCGG 145783 36 100.0 38 .................................... AAGGCGTTCCAGGCGTTCCGCCGCGACCCGTCGGTGCA 145709 36 100.0 36 .................................... ACGTTGCCGATCGACAAATAGTCGAACACGGGTTCG 145637 36 100.0 37 .................................... CTGACTCGTCCTCGCACGGTGGACATCATCGCGAACG 145564 36 100.0 36 .................................... CCCGACCCGTGGGACGAGAGGGCCGCGGCACTGCTC 145492 36 100.0 38 .................................... CGGCTCATCTTGTCATTGTCGAGATCATCGCCCGCATG 145418 36 100.0 35 .................................... TGGGACGTTTACAGTGCGGAAGAACGTATGAAATG 145347 36 100.0 37 .................................... TCGAACCCGATGGGCCGGTTCTTCCTGAGCAAGGCCC 145274 36 100.0 35 .................................... CTTGCCGGACTGGATACGCATATCCTTCACGACGA 145203 36 91.7 37 .........A............G............G CCGGGATTCGCCTTCATCTGCGTTTCCACGGCAAACG 145130 36 94.4 39 .................T.................G AATCCGCAAACTCTTTCCACGTCGTATTTTCTCACCCAC 145055 36 94.4 35 ...........C.......................G CGGGCGGTGGTCATGTTCGCCGCGGTGGGGAACGC 144984 36 100.0 36 .................................... GACCGTCATGTGGCGGTCGTGGACGTGACCGTCACG 144912 36 91.7 189 ..............C...................CC TGTGAGTTCACTCTTTTTGACGTTATTGAAAGAGTGAATGATTTGTTGTTCGGATTCACATGGATGCTGTTTGTTTCATCGTTGAAATCGTGTTGGAGTGTGCTTAAGTGTTCGTTTCCAATTCGCTCTTTTTAGAACCCCTCCAAAGAGTGAACCGACGTTTCATGCGATTACCGAGTGGAGTGGGGC 144687 36 75.0 0 ..........GA....AT..CA.A........C..G | C [144674] ========== ====== ====== ====== ==================================== ============================================================================================================================================================================================= ================== 30 36 98.2 42 ATCTCTAGGGCTTCAGCCCTAGAGCTTCATTGAGGA # Left flank : ACGATGATGTGCGAAGATCGCGTATCGCCAAAATCCTGCAGAGTCATGGAGAGCGGCTGCAATACAGCGTGTTTCTGCTACGGATCCGTCCTTCGAAAATCTTGAAAATCAAAGCGTTGATTGAGGATGAAATTGACTCCGCCACGGATTCAATATTGGTGTGTGATCTTGGGATCAGTGACCGCGAGAAACAGGCCATGCTGTTTATCGGCAGACGAGGATATCACGATACTGTGATTCCTTCCATTATCTGAAACCAAGATCAGTGATTTTCCGTCTTGACACGACAGACGCTTGATAACTTCAGAGAGTATTGTTTGCCGTCAAATCGATTGCGAGAGCTGAATCATTTTCAGTTTTACGGCCCAGCGTTCGCGGTTGCCATTACTGGTTTGAAAGGGTTCTGACGGGTAAGGGATTCCTGCGGAAATTCCTCTTCTTCTGAACCTCTCGCAACTTCTCGAATAAGGACAGACATGTTAGCCTATCTATATCCGACC # Right flank : GATTCTGGCAGGGGAGAGGAATGTCCTCGGAATTGGGGCTCCGTGACACTGGTTTGTGGCAGGGAGTGATGGCGAATGGGCAATTCCGCATGACGTGTCATGGACTTCTGTCAGGGAATGATGATGGCGTCGATCGGCGCGTTCCGTGCCGGATCACAGGGGTATGCAGTGAGGGGGATCGTTGAACTTGCAACGATGATGAAGGTGTGGTTTGCGGGAATTCTGGCAGGGAACAGGAATATTGCGGAGATCTTCGTTCCCTGCCGCGAATTGGCGGTACTGAATGAAGGCAGATGCTGGTCGTTGCGTTCCGTGCCATAGCTCAATGGCATGGAACGGCGTCATGGGGATTATCCGTATTCCGTGCCGCATGCAACACCTGCCTCACCCACCCCGCATTGTTGGACCGCGCTGATACGCTGAACAACAGCGATTTCACGCTTGTCCGCAGTGCCACTGCTCGCAGCAGTGTCATTGCGGCACGTCATAAGGAGCATTGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCTAGGGCTTCAGCCCTAGAGCTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.00,-9.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 166689-173978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJQ010000003.1 Bifidobacterium simiarum strain SO2 Contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 166689 29 100.0 32 ............................. TATTCGCGTTCCTTGTCCTTGCGGGCTTCGCT 166750 29 100.0 32 ............................. TCGATATCCGTCAGGGAGAGGCGCCGGCAGAC 166811 29 100.0 32 ............................. GACTACAGGACCGAAACGTCCGAGCTCAACGG 166872 29 100.0 32 ............................. TCCACGTGCTCGTTCCTGCGCAGAATGAACTG 166933 29 96.6 32 ............................T ATGTGGTTCAGGGAGTCGCAAATGATGCCGGA 166994 29 96.6 32 ............................A TGGCAGGCGATGCGTGATCCCTCCATCTGGGC 167055 29 100.0 32 ............................. TATTCGCGTCGTGTCCGGTCCCGCGGCGTCGG 167116 29 100.0 32 ............................. GCCACGGGGATGATCAGGCCGGATCCGCTGCC 167177 29 96.6 32 ............................T CTCGGACACCGCCGCCCTCGTGCGCAGCGCGA 167238 29 100.0 32 ............................. ATCATCCGGTGAGGGCCCAGTAACCCCAGCCG 167299 29 100.0 32 ............................. TCGATCGCCGCGCGAGCATAGGACTGGAGCGT 167360 29 100.0 32 ............................. GCGTCCAGTGGCATGCCTGGATGTAGATGCGA 167421 29 100.0 32 ............................. CACGTGGCAGGGCAACACGCTCATCTGCCTGC 167482 29 96.6 32 ............................T AGTCGAACACGGGTTCGGCGCCCATGGCGAAA 167543 29 100.0 32 ............................. GAGAGCCGTCGAAGGCATCCCCAAGAAGCACA 167604 29 100.0 32 ............................. TCCATTGCCCTGCTTGCCGGCCAATTGTTCGC 167665 29 100.0 32 ............................. CGAATCCGCCGCCGAGCACGAAGCCCATGCCG 167726 29 100.0 32 ............................. GCCGGCATGAGCACCACTGACATCCTCTCCGG 167787 29 100.0 32 ............................. CTTCGCGGTGGTGATCGACCCGTCCGCCGGTT 167848 29 100.0 32 ............................. GGTGCCGATGTGCGCGTCCTTGACCATCTGTA 167909 29 100.0 32 ............................. ATGCGCGAGGGACTCTGGCACAAGGGCAGCTA 167970 29 100.0 32 ............................. GACATTGAGACCAGTCAAAATGAGTGGTATTT 168031 29 100.0 32 ............................. GCCAGTGGCCCCACGGCCACCTGACACCCAGC 168092 29 100.0 32 ............................. AACCAGACGGCCGCGGCGGTCAGGGCGGCGAA 168153 29 96.6 32 ............................A CGCTCGTTACAGGTTTCGGGGAGATTGACCCA 168214 29 100.0 32 ............................. TTTCACTTTTCACGTCGTTAACCGTGAAATTC 168275 29 96.6 32 ............................T CCGACGGACAGGGCGTCGAGGGCGCCTTCGGC 168336 29 96.6 32 ............................T TATCGTGTGATTGATAGATCCAGCGCGCTGAT 168397 29 100.0 32 ............................. GCGACGGGCAGGACGCCTTCGGGCACGGTGAC 168458 29 100.0 32 ............................. TACGACGTGCTGAGCGTCTGAGGGTTGTAGAA 168519 29 100.0 32 ............................. TTGTAATTGTCGGTGGCATTATCCTGACGCCA 168580 29 100.0 32 ............................. ATCGTCGTCACCATGCCCGACAGGACCATGCG 168641 29 100.0 32 ............................. CAGTTCTTGGGGGGTACAGTTCAGGGCGCTGG 168702 29 100.0 32 ............................. GGTGGTTCGGTGAGTTTCCGCGCGCTTGATTG 168763 29 100.0 32 ............................. GGCCCAGTCATGCAGCAAACCGAACTCGCCGC 168824 29 100.0 32 ............................. ACCTGACCATCATCCCAAACCAAACCGAAGAC 168885 29 100.0 32 ............................. AAGGCCGGCGCACGACTGGAAACCCAGTTGGA 168946 29 100.0 32 ............................. CTTTTGACGGCCTCGAACTTGCTTTTGAGGCC 169007 29 100.0 32 ............................. GTTTTGATTGCGATTCGACGAACCTCACAGAA 169068 29 96.6 32 ............................T GGGCGCAACATATTGAGTTTGATACCGGTGCA 169129 29 100.0 32 ............................. CACCAGAGTCGATCCATGATCCCTCATGTCCT 169190 29 100.0 32 ............................. GACTTGGCTCATGCTATGGGAATTGCCGCGCC 169251 29 100.0 32 ............................. GTCTTGGGAGAGCCGAACGTGATGGCGCTCAG 169312 29 96.6 33 ............................C AGTTTGGTAAGCGCGGTGTTAGTGTCGTCCTCA 169374 29 100.0 32 ............................. AACGGCTTAAGTGGCTATCCCTCGAATGGGAT 169435 29 96.6 32 ............................T AGGACGTGCTGAGCGTCTGAGGGTTGTAAAAA 169496 29 96.6 32 ............................T GCATACGACTATAATCAATATGATGAGTCACA 169557 29 100.0 32 ............................. GCAGCGTAGCCGGTGACGGCGATCAGGTTGCC 169618 29 100.0 32 ............................. GACAAGCATGAAAACCACGGCAAAATGGGGCA 169679 29 100.0 32 ............................. ACCGGTTTCACCCGCACCGTCAAACCGGCCGT 169740 29 96.6 32 ............................T GTCGATCGCAGTCGTGACACTAGCGTATGGGC 169801 29 96.6 32 ............................A CGCTGACCATCAGCAAGGACCTCTCCGGCGTC 169862 29 100.0 32 ............................. TGCTGGCGTCCGTAGACGTTGACGCGCTGGCG 169923 29 100.0 32 ............................. GCGCAGGCAGGTCAAAGCGAAGTCGAGTTCGC 169984 29 100.0 32 ............................. ACCACCATCATGGGCGTCCTCGCCGCATGGTG 170045 29 96.6 32 ............................T GGGTTGCCGTAGATATCCAGATTGCCCCAGTC 170106 29 100.0 32 ............................. GCCGGTGAATGATGGGCCGGAACACGAGGAAC 170167 29 100.0 32 ............................. CCGAGATCCAACGCGAGAAGGAGGACGCGTCA 170228 29 96.6 32 ............................T ACACAGGGCTCAAAACAATCAACAACGATGAA 170289 29 100.0 32 ............................. AAATACATGCGCGTGATATGATCGGTGTCGTT 170350 29 96.6 32 ............................T GCCCCGCGTCCATCGCGGGCGACCAGCGGGAC 170411 29 96.6 32 ............................C AACATTCCCCTACCGCCAAACAATGTCAGTGA 170472 29 100.0 32 ............................. ATAATGCCACCGACAACTACAATCTGCTACAT 170533 29 96.6 32 ............................T AAGTCTCCGACTCTGGAATGACTTATACCTGC 170594 29 100.0 32 ............................. ATCGCCGCCTACTACAAGGAGTCCGACGAGAT 170655 29 96.6 32 ............................C TGACGACGGTCCGCAGATGCGGCTGCGTGTTG 170716 29 96.6 32 ............................A TGGACGCCCGGCGACGCATTCAACGGCCCGCG 170777 29 100.0 32 ............................. TACATCAGCCGTCCCGCGAACGTGCAGCCGTG 170838 29 96.6 32 ............................T TCCTCATCATCCCCGACCTGCTCAAACCCCGC 170899 29 100.0 32 ............................. CGGCGCGGACCCGCTGCGAGTCCTTCCAGCCG 170960 29 100.0 32 ............................. GACCGAGCTCGGATCATCGCCCGCATCAAGCA 171021 29 100.0 32 ............................. TCTAACGTTAAAACCATAGTCATTACGCATAA 171082 29 100.0 32 ............................. GCAGTCAAGGGTGTATCGGGGGTGCGAATAAG 171143 29 96.6 32 ............................A ACGATTCCTCCTCCCGCGTCTCTTCGACCTTG 171204 29 100.0 32 ............................. TGTGTGGGACCTGTCAGATTTAGCTGCGTCTC 171265 29 100.0 32 ............................. TAAGGAGGCAGGATTGACTGACGGCAACGCAT 171326 29 96.6 32 ............................T AGTGGAACCGTAAGTGAGATTCGCGCCCTTGA 171387 29 96.6 32 ............................T AGCAATTCTCAGGATCGTGTGTCTTGGGACTC 171448 29 96.6 32 ............................C AAGAGCGCCACGCAGATCAATCGTCGCATCGT 171509 29 96.6 32 ............................C TGGATGACGCAGTAGCGCAGAACCTTGTTCGT 171570 29 100.0 32 ............................. TATCGGCGGCGGCGTCAGAATGTCGCCGTCGG 171631 29 100.0 32 ............................. GGCCTGCTGATTGTCCAGCCGGCCGGCCGGTA 171692 29 100.0 32 ............................. CCGGTACATGCCACCATTTTGATTACCTCACT 171753 29 100.0 32 ............................. TTCGTGTGTTCAGAATCCATTGGAGAATCACG 171814 29 100.0 32 ............................. TTCGTGTGTTCAGAATCCATTGGAGAATCACG 171875 29 96.6 32 ............................T GCCCGATTCACCATCAGTGATCTTGCTGAGTT 171936 29 100.0 32 ............................. TCGCCTGTACCGCCGATATGGTGTTCGCCGAT 171997 29 100.0 32 ............................. GTCCGGGACGTGACTGAAACCATCATGCCTAA 172058 29 96.6 32 ............................T GCCACGGCACGAGCCTCAGGGGTTTCGAGGAT 172119 29 100.0 32 ............................. GTGGCGCCGGATATGTTCAGGGAGGCGGTACC 172180 29 100.0 32 ............................. TCTTAGCGTTCTCAGCCTCGGATTTCAGACCG 172241 29 100.0 32 ............................. AGCGTGTCGACCATGATGCGTTGGAATCCCTG 172302 29 100.0 32 ............................. GAAAAGAACAAGAAGAAAGGATCAAGGTATGG 172363 29 100.0 32 ............................. TCGGTAGCAAGGGAGACGACTAAGGCGGCTCC 172424 29 100.0 32 ............................. GATATCACATGGCTAGATATACCGTGGCATGT 172485 29 100.0 32 ............................. AAAAGGACGCCTAGGCGTGCCTATGCCCCTGT 172546 29 100.0 32 ............................. CACGCTCGAAATAGAACAGACGGATGTACACG 172607 29 100.0 32 ............................. CCGGTCAGTTCACCTAAGTCGGACGCTCCCAA 172668 29 96.6 32 ............................T GACCGTTTGCCAGCACTGCGAAACCACCGAGA 172729 29 96.6 32 ............................C CATGAGCCGACGCCTCGCCAGATGCCGCTGAC 172790 29 100.0 32 ............................. CACACGTATCTGACCGGCCGGCAGCTGTCCGA 172851 29 100.0 32 ............................. GCGTTAGCAGCGGCGGGCTATGTTGCGGCTGA 172912 29 96.6 32 ............................T ATGCGGCGGCCACTGGCCAATCGCCTGACATG 172973 29 96.6 32 ............................T GTGACGACGATGCTCGGGGCTAGTGGGTCACT 173034 29 100.0 32 ............................. AGGAAACCGATGACATTCAAGGATTGGGTGGA 173095 29 96.6 32 ............................C TGGGCCTTGCGGATCTGCGTGGGCTGGGGGAT 173156 29 100.0 32 ............................. GTCCTTTATGTCCTTTGCGACAAAATCGAAGA 173217 29 100.0 32 ............................. GCGATGCCGGCGTCCTGTTCGGTCTTGCGGCG 173278 29 100.0 32 ............................. CCGAGGAGCGCGTGGCCGGGCTGGAGCGGCGT 173339 29 96.6 32 ............................C AAGGTGCTCGCCAAGACCGCGGGCGTTTCCGA 173400 29 100.0 32 ............................. ATCTTGGTATTGAGCTGGTTTTCGGTGGGCCC 173461 29 96.6 32 ............................C AGGGATACGCCGCCAAACTGGCCGATCTCGGA 173522 29 100.0 32 ............................. GCGCTTAACCGCCGAGGCCTGAACATACAACA 173583 29 96.6 32 ............................T TGGAAGATTACCTTCCGCCACTACATTTCGAC 173644 29 96.6 32 ............................T AACGCAAATCTCGAAAATAGTGCTATTTCGCA 173705 29 100.0 32 ............................. GAAGATCGACGCGGAACGCTGGGCCGCCGAGC 173766 29 100.0 32 ............................. TTCGTCAAGGTCGTGCCCGACGGCACGAAGCC 173827 29 100.0 33 ............................. ATGACGATCAGCAAGAACAACAGCATCATCCCG 173889 29 96.6 32 ............................T CCTACCGATGCCAACGACTCGAAATCATCCGC 173950 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 120 29 98.9 32 GTTTGCCCCGCACTCGCGGGGATGATCCG # Left flank : TGAACTGATACAGCCGTTTTGACGTCGACATACCACCGATGTCTTCGGCAATCAACGTCTTGACATCATCGGCCACAAAATCATCCCACACCCGACACGCGATTTCACCAGTATCTTCTAGATGCTGCCATAACTGAAGATAACGTTCATCCGTCGGGTCCCGATATACAGTCTTTGCCCAGATCGACAGGGCCGGTTCAGAAAGATGCGGAATACCCGGGGAAAAATGATGGTCTAGAGAATACTCATGAGACATGATCAAGAACCCCCTTTGGCTTTAACGAACCTTGATTTTTAACCTTTATCTCTTACAGAGAGTAGTTCATTTTCGAGAAATACACAAGCTCACGCGTTGTCTGATTCAGTCATCACCTAATATAGGCTAGGTATGATAGAAGATGTTTCAACTTCAACCAACCCCATTCAGGATTAACAAGGTGACTGTATCAATCGAATTTTTTGTCTTGACGACTGCCTCTGTTTCCGCATAGAATCATACT # Right flank : GGCGGCACCACACACACTAGGCCCTAGTCACACTCTGACATGCAATCAGGGTATCGGTCTCACTACCTACCGATAGGGACGGATACCGGCGTACCGAAAAACACGGCACGCCGGTAGTGGAATCAGATCGTCATACCGTGGCGAACTCACGCATCAGAGCGTGACGCATAATCGCATCGACGGACACGCCACGCTTTTTCGCTACGGAATCTAACATGGCGGACATGTCGGAACTCATGGATACTGTACGAAGGACGGGAGAAACGGGATCTACGTCAAACACGGGACCGGAAAACACGGGACCGGCGCTACCTCCCAACTCACCATGTTCGATTTCATCCGCCCAATGGTCCTCCATGTCTTCGGTGACGATCCGCCCACCTTTGGCGACAACACTCATGGAAACCTCCTTTACAACAGGCCGACTTCACGTAGAATCGGCGGCTGAGCTTTCATTGCATGGAAAACACGCCAATCACCGTCATCCTTCAGATATCCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //