Array 1 727-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTY01000201.1 Aggregatibacter actinomycetemcomitans serotype d str. SA2200 contig0201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 726 28 100.0 32 ............................ AAGTATTATCTGATAAATGTACTGCTGTTTTT 666 28 100.0 32 ............................ GACATTAATCAGAACTTGTACACCATATTGTC 606 28 100.0 32 ............................ TTGTAATGCCGTTTGATTTAGCCGATGACTTT 546 28 100.0 32 ............................ ATGATGATAAAACTACACAAGCTCAAGGTTCA 486 28 100.0 32 ............................ ATTGAGCTTCTGAAAAAGTACTTAGAGGATAA 426 28 100.0 32 ............................ TATGGCTATTTTAAGAAATTTAGATATGTTTT 366 28 100.0 32 ............................ AACAAACTGCACTGATAAGCAATTATTGGTTG 306 28 100.0 32 ............................ TGCTCCACCATAAATCAAAGCTTTTATACCTT 246 28 100.0 32 ............................ TACTCAAGCACCGGTTCAACAAGCAGTAGGTA 186 28 100.0 32 ............................ TCCAAAGTACGGTATTGATGAAGAAATGCTTT 126 28 100.0 32 ............................ TTTAATTGTGGCTATTGAAAATGGTTTACTAA 66 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AAACCAAGACCAAAAACTTTCAGATTATGAAGTCTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 669-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTY01000301.1 Aggregatibacter actinomycetemcomitans serotype d str. SA2200 contig0301, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 668 28 100.0 33 ............................ CTATAAAACAAGCATAGAAGCTTTTAAAATAAA 607 28 100.0 32 ............................ TTTGCCACCTTCACTGATGATTTTCCCTGTCA 547 28 100.0 32 ............................ TAATGAAAATAGAAGTCATTTAGGAGCAAGCC 487 28 100.0 32 ............................ TAACGCACAAAATAGTTAATCAAATTTGGGTA 427 28 100.0 33 ............................ CATTGGTTGTTGCGTTGCAATACTATTAATTAG 366 28 100.0 32 ............................ ATGATGACAAAACTACACAAGCTCAAGGTTCA 306 28 100.0 32 ............................ AATAAATTGTTTGGTTTGTATTTAATTTAAAC 246 28 100.0 32 ............................ CTCTGAACAGTTGTCAATTCTAAAATTATATG 186 28 100.0 32 ............................ AATAATCCTCTCGGAAAGCAGTGTGTGCGGTA 126 28 100.0 32 ............................ ATCTCAATTAGTGCAACGTCAAGGTGTAAAAG 66 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : AAAAACCAAGACCAAAAACTTTCAGATTATGAAG # Right flank : AAACCAAGACCAAAAACTTTCAGATTATGAAGTCTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6119-6349 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTY01000070.1 Aggregatibacter actinomycetemcomitans serotype d str. SA2200 contig0070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6119 32 100.0 34 ................................ CGGAGTAATAGCAACTCAACGCGTCATTGACACT 6185 32 100.0 34 ................................ TCTCCCATTTACAAAACATTATTATATTTAATTT 6251 32 100.0 35 ................................ ATAGAAGTCAATTAATACACCAGACGGTCTAGGTA 6318 32 84.4 0 .T.....T.........A..A....C...... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 96.1 35 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGAAGACCTGGAGGGACAAACCAGGTTGCGCCGTATTGCGAAGCATTGTCTGGATTATGGCGTACGGGCGCAATATTCGGTGTTTGAATGCGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACTCCTAGTTCTCATCAAATTCCCGTCAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACGACATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTTATATAGGGA # Right flank : TTACTTGGCATGCGTTTTTTATGGGTATTTAACCGATTAAAAATATGTGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAATGCTCTGTGCGACTTCGATACTCGCCAAGCTCACGATTTATTGCCCTGCACGATTTTATACAATCCTTTTTCAATATTATTCAACATATCGGTAATTCAAAAAAACACCTTAAAAATCAACCGCATTTTTTCTCTCATAAAACAAAAGCTGAACCTTTCCGAAGATCCAGCTTTTCTTTTATCTATTTATTACGCTAATTCAGCGCGTAATTTTTTCGTGACGTCAACCATTACTTTCAGTTGTTCTAGGGTTTCTTTCCAACCGCGGGTTTTTAAACCACAGTCAGGGTTGACCCATAGGCGTTCTTTCGGCACCACTTGTAACGCTTTGCGTAGCAAGTGTTCGATTTCCGCGGCGGTTGGTACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCGATGTCGTTCGGGTA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3127-3558 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTY01000071.1 Aggregatibacter actinomycetemcomitans serotype d str. SA2200 contig0071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 3127 33 97.0 34 ................................C CAAACAGTTCGGCATCGCTTATACCATCGGCGTG 3194 33 97.0 33 ................................C GTACAGTAATGGAAACAATGCCACCCGTAGCAG 3260 33 100.0 34 ................................. ATCAATGGTACAAATTATAAATTAGGAATAGGTG 3327 33 100.0 34 ................................. GCAGATCGTGGATGGGCAGAACACGGCATGATTA 3394 33 97.0 33 ................................T AATATTCCTTATGAAATGCAAACTTACCCACAT 3460 33 100.0 33 ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 3526 33 81.8 0 .......T.....CA.....C...T......T. | ========== ====== ====== ====== ================================= ================================== ================== 7 33 96.1 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : GTTTTCCCATGCGCAAGCTGCAAAACACGCTCTATATCACCACTCAGGGCAGTTATCTGCATAAGTAGCGGGAAACGCTGGTGGTGGAGCAGGAAAGGAAGAAAGTGGCGCAACTGCCGGTGCATTCCATCGGGCATATTTTCTGTTTCGGTAATGTGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCATCTAGGTAGTAAATGGCGTCGCAAAATAGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : AGGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2565-135 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTY01000010.1 Aggregatibacter actinomycetemcomitans serotype d str. SA2200 contig0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2564 28 100.0 32 ............................ ATAATAAAAATTTTTTATGATGTTTTTTGTAT 2504 28 100.0 32 ............................ ATATCATCAACCGGCTTTAGAAGGTAAGAAAA 2444 28 100.0 32 ............................ AATCAAGACCAAAGACTTTCCGATTATGAAGT 2384 28 100.0 32 ............................ TTTTAGATTGAAATAGTGTTGCAATATTACTT 2324 28 100.0 32 ............................ TTATTGCAAACTGTACGCACCTGAAATGATGA 2264 28 100.0 32 ............................ TTGGCAATCGAAAACACTGTTACTATTAACAC 2204 28 100.0 32 ............................ ATGTTATAAATTCATTTAAGGAAATTTACATT 2144 28 100.0 32 ............................ TACAAAACAAGGTCGATTTTAACAACCCCTAA 2084 28 100.0 32 ............................ TATATCTTTTTGTTTTAATCCTGCTGAAAAAA 2024 28 100.0 32 ............................ TGACGGTAATTGTCCTTTAACAATAATATGCA 1964 28 100.0 32 ............................ AAAATCTAAATTTTATGGTTTCAGATAATCAT 1904 28 100.0 32 ............................ AATGTCACCTTTAATAAAAGATTCAATTACAG 1844 28 100.0 32 ............................ AAAATTAGTATCACTAAAGTTACTTACTTTAG 1784 28 100.0 32 ............................ TTTGGGTGTAGATATTTTGTTTTACGTCCCGT 1724 28 100.0 33 ............................ TAGACAGTCACCGGCACAAATATTAAAACAAAT 1663 28 100.0 32 ............................ TGATTTGTTGTATAGGTCCAGTAGTACTTTAC 1603 28 100.0 32 ............................ AAATCGATAATGTAAATAATCGCATTGACAAC 1543 28 100.0 32 ............................ TCTCTTCCATACAACCGGTAATTCATTTTCAT 1483 28 100.0 32 ............................ TAGAGTATTACGCAGCAAGATTAAATCAAGAT 1423 28 100.0 32 ............................ AAGAAAAGGATTTATAACAGTTATAGTATTTT 1363 28 100.0 32 ............................ ATAACTTCGCAAACTATGGCGGATTTCCGTTT 1303 28 100.0 32 ............................ TTGATATGTAACAGATTCAGCATTGATTATGC 1243 28 100.0 32 ............................ TTTACTCGGTCATCAAAACTGTTTGTGTCAAC 1183 28 100.0 32 ............................ TTTTTCGCCCTGATCGCCTTTTGCACCTGCAA 1123 28 100.0 32 ............................ ATGGCCCCTATGTCAATTGGCGGCATATAATT 1063 28 100.0 32 ............................ AAAATCTGAATAAGCAAAAAGATTTACATATT 1003 28 100.0 32 ............................ AAGGAAAATCCATTCACCTTCAATTAGACCTA 943 28 100.0 32 ............................ AAAAACAAAATGCGATTGGTTTAATGATTTGG 883 28 100.0 32 ............................ ACAATACAAACTTAAGCCCAATTTGCGATAAT 823 28 100.0 32 ............................ TAAAGCCACGTAATAACTGCTGATTAGATAAT 763 28 100.0 32 ............................ TTCAGCAAATTTAAAATCACTTGTAAAAAACC 703 28 100.0 32 ............................ TACAGCTAATCCGTTCCCGACAGCACAACCGG 643 28 100.0 32 ............................ TCTGAAATAGCCAATATTTGCACCACTAAAAG 583 28 100.0 32 ............................ AGCCCCTGTAGGCAATGCTAATAAAGGATTGT 523 28 100.0 32 ............................ ACGTAAAGGAATTAGTTGCTCAAAATGCTGAA 463 28 100.0 32 ............................ TATTTTCCAATTTATCTAAATGTTTTTTATAG 403 28 100.0 32 ............................ GATAACTCTTTGTCGATTAGATTTGATACGCA 343 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 282 28 100.0 32 ............................ AAATCAGAAAGATAAAAAATGTAAGTCCAAAG 222 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 162 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.9 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : AAAAACCAAGACCAAAAACTTTCAGATTATGAAG # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTTATAATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //