Array 1 5700-3326 **** Predicted by CRISPRDetect 2.4 *** >NZ_LABX01000245.1 Methylobacterium aquaticum strain DSM 16371 contig_245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 5699 31 100.0 33 ............................... AACCGCGGCCTGCTCTCTGGGCTCGTGCCCGAA 5635 31 100.0 34 ............................... AGCCGCGGCCAGGCCAGCCTCGGCGGGCTCACGC 5570 31 100.0 33 ............................... TACGAGGCATGGTCTCAGATCCGCTCCGCCATT 5506 31 100.0 34 ............................... TCTCGTCTCGCGCGTGATTTCGTCGACGCGATGG 5441 31 100.0 33 ............................... CCAATTCGCCTTGATCTATGTCCCGACGATTTG 5377 31 100.0 35 ............................... ACGCTTTCGACCGCTAGGCTGCGGGCTTTGGCGAG 5311 31 100.0 34 ............................... GCAGGATCTATTCAGCAACGCTCATGACCGCGCG 5246 31 100.0 34 ............................... CGCTATGGCGGTGGTGGTCGTGGCGCAACGCAGG 5181 31 100.0 34 ............................... CTTTTGTCGGGCGAGCATGTGGGTGAGTAGCGCG 5116 31 100.0 34 ............................... TTCTGCAGGATGGCGCCCAGCAGCGCCTGTTCGG 5051 31 100.0 35 ............................... CTCCTCGGCTACGGCCCGCTCGCGGTGCGCAACTG 4985 31 100.0 35 ............................... TCAATGGGTCGCGCTGCTACGCCAGCGATGGCAAT 4919 31 100.0 34 ............................... GCGTCGGTCTCTATGCCAAGGCGCTCACTGGCAA 4854 31 100.0 33 ............................... ACTTACGGGACCCACGCTCCGCCCTGGCGTTTA 4790 31 100.0 34 ............................... CTCCCGGGCGATGAGGGCTGCGCGATTGGGTCTG 4725 31 100.0 33 ............................... CAGTTTTGCATTAGCCACGGATGCCGCTCACAT 4661 31 100.0 34 ............................... CGATAGACCGCGGCCCGTGCGGCGTTGGCGCTGT 4596 31 100.0 34 ............................... CTGCGTCTCACCGCGGCTCCCTCCGATCGCGCCG 4531 31 100.0 33 ............................... AAGGACAAGGTCGAGCACTCCGGCCCGAACGGC 4467 31 100.0 34 ............................... ATCAACGCAGCGGCTGAAACGGGCCTCCCGCTCG 4402 31 100.0 33 ............................... AGCCCTACGCCGACGGCCTCGACCTCGTGGGCG 4338 31 100.0 35 ............................... TCCCCCGAGATCACCCCTCTGGGTCATGCCTGATG 4272 31 100.0 34 ............................... CCTGAAGCGCGCCTTTGGCGCCGGCGCTCGCGAG 4207 31 100.0 34 ............................... CTGGCGGTGATGCAGGCAATCCCGTCCGACAAAT 4142 31 100.0 34 ............................... CCAGCGAGGCCGCGCCTGAGTTGATGCCGACCTG 4077 31 100.0 35 ............................... GTGGCTCTCCCCCGAGGCGGGCGAGCGCACGAATG 4011 31 100.0 35 ............................... CTGTCACGGGCCGTGAACGACTACGCGGCCCGGCG 3945 31 100.0 33 ............................... TGCGCCGCCATCGTGAGCACCCGCATGGCTCTA 3881 31 100.0 35 ............................... CCGGCTGCGCGGTGGCGTGACGGAGAGGATGGCGG 3815 31 100.0 35 ............................... TGCATATCATAGCCAGCCGCCGCCAGAGCCCAACC 3749 31 100.0 36 ............................... CTCTATCGCATGAGCGGCAAGCGCCGGGAAATGGGG 3682 31 100.0 36 ............................... AGTGTCTGTCGTCGCGCCCTTGAGGGTGGACGACAT 3615 31 100.0 33 ............................... GACTGATCCGGAGCAAGGGAATAGGTGTCTATT 3551 31 100.0 34 ............................... ATAGCGCCACGGTGTGCATGTCGCGGGCCCTGTC 3486 31 100.0 35 ............................... AACGACCTCGAGCCCTATCCCGGCCCCTATGTCGG 3420 31 100.0 34 ............................... CGCCAGATGGCGATCGAGCACGGCTCGCCGCAAC 3355 30 90.3 0 .................-...........GG | ========== ====== ====== ====== =============================== ==================================== ================== 37 31 99.7 34 GTCGCCCCCTCACGGGGGCGCGGATCGAAAC # Left flank : CTTCGTCTGGAAGTGAGGCGGCGCCATGTTGATGCTCGTGGCCTACGACGTGAACACCGAATCCGCAGCCGGACGGCGCCGCCTGCGCCGCGTCGCCCGGGCCTGCCTCGATTATGGACAGCGCGTGCAGAACTCGGTCTTCGAATGCGAGGTCGAGCCGGCCCAATGGACGGAACTGCGCGCCCGTCTCATGGCTGAGATCGACCCGTCGCACGACTCGCTCCGCTTCTACCGCCTGGGCTCCGATGCGCGAGGCCGGATCGAGCACGTCGGGGCCAAGCCGATCCTCGATCTCGACGGACCGCTGCTCTTCTAGACGCGTGCGCGAACCCCAAGCGGACAGCCTTCTCCCGACGCCTTCGCGCGTCGCACAACCTGTTGCGGTAAGACGCATTTCGATGGCGCGCCGGTCCCGTCACGGCGCGGAACGCCGGTGATCGGGGGACGTTCGCGCAGAAGCGTCCTATTTCGTTTTACGCGCAAGTGGTTAGGGTGCCGCC # Right flank : ACAGGCGAGGCGGCCCAGACAACCGGACCGCCTCATTCACCAGCGTCGTGGCGGATGCGGCGTCACGCGATGATGTTGTCCTCCGGGGCGCGGTAGGCATCGTCCTCCAGGGTCAGACCGGATCGAGACTCGTAGAACGCCATGTCGTCGAGGCGCAGCAGCGCCCCTTCGAGCCTGGAGTGGACGGGTCGCAAGCGCCCAACGGCCAGCCAGCGCGCGCGCAGCGTCGGAGGAACGGGCACGACGTAGCCCTGAAGGCGGCGCAGATCGTCGCCGAGGGGGCGGTCCATGGCGGCGATCCGCGCCAGCAGTGTCTCCGCGCGGCCGTCGTCGGAATCGGCCCGCCACGGCACGATGACCGGCTCCATCGCATCGTCGATAACGCGGAACGCCCGGGCGATGCTGGCGAAGGGGAAGGCCCATGTCTTCGCCCGCTCGGCGACGGCGGGGAGAATCGGCCAGATCTCCTCGTCCAGCCGAGGCGCATCGAAGGCGTGCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11090-11301 **** Predicted by CRISPRDetect 2.4 *** >NZ_LABX01000130.1 Methylobacterium aquaticum strain DSM 16371 contig_130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11090 29 100.0 32 ............................. CCGTTCACGTCCTCCTCGCCGAGCCGGTAGCC 11151 29 100.0 32 ............................. GGGTGCCAGGGCGCCTCGACCATCCACTCGAT 11212 29 100.0 32 ............................. CACCGGATGCGCAACGAGGCCGCCGGCTCGTC 11273 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : GAGGGGACGGTGCCGACCCGCCTCGCCGAGGAGAGCCGGACCCTCCGCCTCGCCCGGGTCGAGGCCGGCCGGCTGGTGCCCTGGCACGCGGAGGCCGATCGCCGCCTGGCCTGGGCTCTCTCGGAGGTCGCGGTGGCCGTCCGCAAGCTGCGCGGCCACGTCGCCCCCGCCCCGTCCTGGCACGCCGCCGTCGCGGCGGCCCGGTCCGGCTGGAGCCGCTTCGACGAGGCCGTGATCCTGCTCCCTCTGGAGCCGGGGCCGGACGGCACTTGGCAGGGCACCCTGGTGGCCGAGGATGGCGGCTCCCTCGTCCTGACCTATGGCGCACGGCGCGGGCTCATGCTCTGAGCCGTCGGCGCCGGGCTCTGGCGCCGGGGGCCGATCCGGGGCATCATTGGGCCTGTCCGGGATGCCGAATTGGGCCGGCGGAACGGAGCGGAAACGCCGGTGCGCTGTTTGACATCGTAAAACGCGAGGCGGATCAACCGCTTCCAGAAGGA # Right flank : CTTGCCAGCCGCGCCGCCCCCCTGCTACACGGTCGGCCGCACGAGCCGATCTAACCAATTGATTTCATTGATGATGAGGCGCTGCCGACCAGGTGGCCGCCGGAGGCGCACGGACAGGTGACGGCCCAGACCTCTTTTCCTTCGCCCGATTCCGCCGCCCCCTTGCGCGCCGCGCTCCGCCTCGGGCGCGGCCGCGCCGTCACGCGCGACTTCTCCCGCCTCCGGCTGGAGTTCGGCGTCGAGGGCCTGCGCCTCGACGTGGCGGATCTCGGGCTCGGCGGGCGCTGGGTGAGCATCGCCTTCAAGGACGAGAACCACGGCGCGTTCAGCCGGGTCGAGCTGACCGCCATCGTGGACGGGCCGGAGGGGCCGCAGGGCACCAGCCTGTCCGAGCGGGCCTTCGGCCATGGCCGCTTCACCTGGCTCGGGCGGCTGCCCGCCGGCATCACCGCCCTGACGCTGACGCCGATGCTCGGCGAGGCGGGCTTGAGCATCGCCGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7269-8151 **** Predicted by CRISPRDetect 2.4 *** >NZ_LABX01000103.1 Methylobacterium aquaticum strain DSM 16371 contig_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7269 29 100.0 32 ............................. CGAGTTTCCGTGGCTGCCGCCTACTGAGCGCA 7330 29 100.0 32 ............................. GATCTTCTTCGAGAGGTTGAGCGCCTCCTGGC 7391 29 100.0 32 ............................. CTTATCCAGGATCTAGAGGAGTCTGCTGCGCT 7452 29 100.0 32 ............................. CCGCCCGCGCCATCATCGCCGAGGGCTGTGGC 7513 29 100.0 32 ............................. TTCGCCGACGAGGGCGAGAAGGACTACCAGCA 7574 29 100.0 32 ............................. CGATCTCGGCGCCCTCCCCGACGACGAGGGAG 7635 29 100.0 32 ............................. CACGCGCCAGAGATCAATGAGGGTGTGTATTG 7696 28 96.6 32 ..............-.............. CCGGCACGAAGATCAAGGTGGACGTGGACTCT 7756 29 100.0 32 ............................. GATCTCCTGCCCGAGTACCGGGCGATCGAGAA 7817 29 100.0 32 ............................. TCGTCGGGCGGCCCGCGCGTCCGACACACCCA 7878 29 96.6 32 .............A............... CTGCCGGAGCGATCGACGAACTTGCCGGACTT 7939 29 96.6 32 .............A............... TCGACGTTCGACTCGATCCCGATGCCCTTGTA 8000 29 96.6 32 .............A............... CCGCCATCCGCCGCGTTCAACTCCGGATCGGC 8061 29 96.6 32 .............A............... CCATCAAGGCGATGTCGTCCGCCCTCAAAGGC 8122 29 89.7 0 ...............A..C.....C.... | G [8149] ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.2 32 GTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : AGTCCCGGCAGCAGGAACCAGGGCTCCGCCCGCTCCGCCAGGCGCAGCGGGAAGGCCGCGCCGTTGCGCCAGACCTCGACGAGGCCAAGCAGCGACAGCCCGACCAGCGAGTTGAAGACCAGCGCCCCGGTCAGCCCGGTCCCCCGCGCCACCATCGCCCCCATCAGTGCGTTCTGCACCACCAGGGCCGCCCCGGCGACGAGGCAGAGGAGCGTCGCGCCGGTCATCGGGCGGCTCCGGCTGGATGGGACGAGGGGGCGGGATCGGATGGCATGGCGCGGCTCCTGTCGGGCCCCGATCATCGTCCATGAGGGTTGATTGTCAAAAGTCGGACATGGGACGGTCCTCGGCTGGGACCGCTTTCCGGGGACTTGGAAACCCGCTACGTCTGTGGCGGACCGATTCCGGCAGGCCCCGCGCCCGGCCGGGAACGGACCGTGATCGTCGGTGCGCTCTTCGACATCGTAAAATGCAAGCCTGATCAAAGGCTTCTCGGAAGG # Right flank : GGAGGACCCGAGCGTTATCTGCCGCATCGACGCGATCGAGGCCTGTTCCCTGGGCCCGCCGGGGTGAAGCAGAGCCTTCATGCCACGCCACCACCTTCCCGCGCCCGCCGAAACCCGCTACGCCTCCCCCACCATGCCGACCGAATCCTCCTCACCCGTCACCGTCGCCGCCGGCTCTGTCCGGTTCGGCAACCACCTGCCGCTGAGCCTGATCGCCGGGCCTTGCGCCCTGGAGGGCCGGAGCCATGCGCTCGAGGTTGCGGGCGCCCTGAAGGAGATGACGGCATCTCTCGGCATCGGCCTCGTCTTCAAGTCCTCGTTCGACAAGGCCAACCGCACCTCGGCCGGGTCGAGCCGGGGAATCGGCCTTGCCCAGGCGCTGCCGATCTTCGCCGAGATCCGCGAGACCCTGGGGCTGCCGGTCGTCACCGACGTGCACGAGGCCGGCCACTGCGCCGCCGCGGCGGAGGCGGTGGACGTTCTCCAGATTCCGGCCTTCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : GTGTTCCCCGCATACGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //