Array 1 728-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAWP01000010.1 Streptococcus gordonii strain SK12 Contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 727 36 100.0 30 .................................... TGGAGAAGTTGCCGTCAGTATCAGATGTTG 661 36 100.0 30 .................................... TGCTTGCACCCACCATTGAACGGGCCTTGT 595 36 100.0 30 .................................... TGTAATTAAGCACCCCTTTGTTTATAGCGG 529 36 100.0 30 .................................... GAAGCTTTAGGTGTAAGTCCAAGTACAATT 463 36 100.0 30 .................................... ACTTACTCGCTTGGTTTGAGATTAAGGAAG 397 36 100.0 31 .................................... TCCCAAAGCCATTATCAATCCTGAAGATTTG 330 36 100.0 30 .................................... CAGCCTGATTTGTGTGATTTACAATGCCCA 264 36 100.0 31 .................................... AAAGCTATGAACGATGTTATAGCTACTACTA 197 36 100.0 30 .................................... CTGATAACGCTGAGCTGATTGCTAAGTCAA 131 36 100.0 30 .................................... CGCCTGTACCAGACCATATCCGAATACCTG 65 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGGATGATTATCTATCCTACAGTGAATTTGTTAAGTGTTGCGAAAAAATGGAACTTCTTACTAATCATAGTAACTCACTATATATTGTTTCGTTTCCATCCAATGAGGGCTATATCCACGTCACTAAAGAGGTGTTAGAGGAAATCAATATTGTCTCAGATTATGTGGATCATTTTTATTCGTTAGAATTTATGTATGATCGCTTTACTAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAGGTTGGCCCCTATTTATTTAGTTCAGACATTCTTCATATGAGTTTATCAATAGAGGATCAAGTGGTATTAAAGATTTTAAACAAATTGTATCAGTATGAAATGAAAACAAAATTCCGTATTGGAGCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGTGATGTAAGGATTTATAATATTTTTGAGGTACAGAAACCAAAATTGACGAATTTGAG # Right flank : CGGACTCGCTAGAGAACAGGCAGAAAGCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 192843-192479 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAWP01000003.1 Streptococcus gordonii strain SK12 Contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 192842 34 94.4 30 --.................................. TTACCGTCTGTATCTTTGACAAAACCTTCG 192778 36 100.0 30 .................................... ATTTGATATTCCGTTCTTTAACGCCTGCGG 192712 36 100.0 30 .................................... ATAGACCACATATGCACATAACTGGCATTG 192646 36 100.0 30 .................................... ATAGCACTCTTTATCCTACAGCCTTCCGAC 192580 36 100.0 30 .................................... GATTGGTCGCAAGCAGATGAAGATTCTGGA 192514 36 80.6 0 .........................G.G.AATT..G | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 95.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : | # Right flank : TTTTTCTTTACGAATCTATCCAAAAAAACCACCTATTAGGTGGTTTTTTCAGTATCTATCACTGCTTACTAGAAGAAGAACTTGAGCTGTTTGAGCTGTCGCTGCTGGATTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGGAGCGCTCGATAGCTTGGAGCATTAAAGAGGTCAATGGTCGATTCACCCTTGCGTTGGCTGTAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCGATTTTCTTCAATGCTTTGAAAGAGTGGTTGTAAGAGTATTTCTTGACATCTACCTTGCCCAAGTCATTACCCTCGTAGAAGCGAATTAAGTCACCGGTTTGAATAGCGTCACTAATCTTCAGCTGGGTATTGGCAGCATTACGAATATCATCCAGTTCTTTCTTGATGGTTTCGTCTGGATTGGTAATTTCCTCACCGGTTTGAGTGTAGTAGGTCCGTCCGTTGAAGCTAGTGTATTTTGGTGTG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //