Array 1 3346-1018 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRWR01000037.1 Phocaeicola vulgatus strain AF19-16 AF19-16.Scaf37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 3345 33 100.0 32 ................................. TTTAATGTTTTATGGGAATACTTTATATTTTT 3280 33 97.0 32 ................................A CAACGAACAATTAAAAAATACATGCTATGATC 3215 33 100.0 32 ................................. TGCTATGATAATGAAAGCTATATGTGGAAATA 3150 33 97.0 32 ................................A GATACCAATACTGCCCATTGTTCCCGATAGAC 3085 33 97.0 32 ................................A GACTTGCATTGTAATCACGATCTATTATAGCA 3020 33 97.0 33 ................................C GAAAATAGGGACGAAGTGGGACAGGATCTTAAT 2954 33 97.0 33 ................................C GAAAATAGGGACGAAGTGGGACAGGATCTTAAT 2888 33 97.0 33 ................................C GAAAATAGGGACGAAGTGGGACAGGATCTTAAT 2822 33 97.0 33 ................................G GAAAACCAGCAGAAGCCCTATACTACTTTATGG 2756 33 100.0 32 ................................. GAAAACATACTGTACGATTTTCTACTATCTTA 2691 33 97.0 32 ................................A GCTATGAGAAAGAAATACGCTAAAAAACAATT 2626 33 97.0 32 ................................G ATGAAATACTTGAAGCTAACAGGGATGTGCTT 2561 33 97.0 32 ................................A TGTCAAACACGCCTGTAAACCATTCTACAATA 2496 33 97.0 35 ................................A GCAGCTTTGCTGTTTCCAATGTTACAAGTTCTTCG 2428 33 97.0 31 ................................A AATCAGGTATATGGATATCCAGATTATCCGG 2364 33 100.0 33 ................................. TTTGATTTTATCTGTTGATCTAAACCTCCTATA 2298 33 100.0 32 ................................. ATTTCATTTGCACCGTTGGATAATTTTGTAGG 2233 33 97.0 33 ................................A TGTCTGCCTTGCTTATTTCGGTTGCCAGATTGG 2167 33 97.0 33 ................................G TAGACTGATTGAAATCTTCACCGATAAGGGTGA 2101 33 97.0 32 ................................C GTCCTCCGGAACAACTGGAGGGTGAAGCCTTT 2036 33 97.0 33 ................................C AACAGTTGGGGGTGTCCGTAATGGGGCGTTCCG 1970 33 100.0 33 ................................. CTGACAGTAATATAGATACTTTAGCAGTAGATA 1904 33 100.0 33 ................................. CATGATGCGATACCGTATCAGTGATATGGCGGA 1838 33 97.0 33 ................................A AAAATGGTCTTACAACAACAATCTTATAGGATG 1772 33 97.0 32 ................................A TTATGCCGTTATGTTTAATGATTTTAAGCCAT 1707 33 100.0 32 ................................. CCCGAATATCTGACATATTATGCTGTGATATC 1642 33 97.0 31 ................................C CTTGAAAAGAGAAGATATCATGTTGCTGTTC 1578 33 100.0 33 ................................. TACTGGGAGATGATATCCGATCTGGAGAACGGA 1512 33 100.0 33 ................................. TTATTAGAATGATACACAACAACCAGCAAGAAG 1446 33 100.0 33 ................................. TTATTAGAATGATACACAACAACCAGCAAGAAG 1380 33 100.0 33 ................................. TTATTAGAATGATACACAACAACCAGCAAGAAG 1314 33 97.0 32 ................................C ATGACGACCCAAAGCATAATAATCTTAACTTA 1249 33 100.0 32 ................................. CTCCTCCGTGTATAGTTGCATTTATATCTATT 1184 33 97.0 33 .............................G... CGAAATAGCGTAGCGATCCTTGCTCATCACAAG 1118 33 97.0 33 ................................A CGCAATCCACCACTATCATAGCTCGGATGAACT 1052 33 90.9 0 ....................A.........G.A | TA [1029] ========== ====== ====== ====== ================================= =================================== ================== 36 33 97.9 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAAAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAGTCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTCAAAGCAAATATATTATATTTTTACTATACTATCCCTTGTTGCTTATTTGTTATGTTATTGATTATTAATGTATTGTTATCTGTTTGTATCGATTGTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGAAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGGATGAACCGCAAAAAAGTCCATAAAATGGAAA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //