Array 1 102910-101950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPGA01000003.1 Streptococcus oralis strain SK141 gsmSK141.contig.2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 102909 36 100.0 30 .................................... ACGACATTCAAATAGTTGCTCATTTCTATA 102843 36 100.0 30 .................................... GTGTGTTTACGTCCGATTAGTTTACTTTCT 102777 36 100.0 30 .................................... AAGGTTTATGAATTTATAAAGAATAATCCA 102711 36 100.0 30 .................................... ACTAAAAGGCTTGCATTGCCACTTTGTTAT 102645 36 100.0 30 .................................... CAGAATCAATCTTCTTCAAGGCTTCACGCT 102579 36 100.0 30 .................................... AGATGATCTTTGATTCTGGTGAGGACTTTG 102513 36 100.0 30 .................................... ATTGATGATTTACAATTAGCAATCGATGGT 102447 36 100.0 30 .................................... TTCAAGTCAAGCAAGTGACAGGTGATAGGA 102381 36 100.0 30 .................................... GGACGAGGAGGAGGACAAAGAGAGAGCAAA 102315 36 100.0 30 .................................... ATAAGTTATTTCTTCAACTCGAAAAAGGCG 102249 36 100.0 30 .................................... AACGGTCATCAAATCGGAATCAGTCGGGCG 102183 36 100.0 30 .................................... TTTTGTTGACGTATGTCAACACAAAACACA 102117 36 100.0 30 .................................... TTTACCTCACTTTTTTGCTAAAATGGGTAT 102051 36 100.0 30 .................................... AAATGGACGTTCAAACCAACCCACACCTCG 101985 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.8 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGACGAAATCACCATTCTAGAGTTGATCGATGCTCTAGGAGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAAGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAAGGTTTTATTTATCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : AGCTACTCATTCTTTGAGTAGCTTTTTAGCTATTCCCTTACACATAGGTCATTCCCTTATAGCAAAGGAAAACGGCTAGTGCGATAAAAAGTACGGTTGCCCCGATTCGCTGGCTGGTACTATACATCTTTCTCTCCCATTTAACTGGGAAAACAACTGCTAGAGAAGCACCGCCTACTGCACCTCCGATATGCCCAGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATGATATTGATCACGAAAAGTGTCAGATAGGATTGCCCCAACTGCTGGATATAGGGGTTGCGAGTTGCGTAACGCAAGACGATAATCGCAGCAAATAGCCCGTATAGGGAAGTGGATGCCCCAGCAGCGACAACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCAGATAATAGATAGAGAAAGAAGAACTGCTTAGAACCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGCGAAATCATATTGACAATGAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 894363-894132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPGA01000006.1 Streptococcus oralis strain SK141 gsmSK141.contig.5_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 894362 36 94.4 29 ..............C.G................... CAGCGTGCCGAGAAAGAGAAATTTAACCA 894297 36 100.0 29 .................................... TGATGATAGACTTAGCTGAAATCAAGAAA 894232 36 100.0 29 .................................... CTACTCTTGACAACTTCGACACACCGACT 894167 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 4 36 98.6 29 GGTTTTATCGGTCATAATTTTGGAGACTACAAAAAC # Left flank : CACCTTAACGAACACATCAAACAACATAAAAAAGACCACGCTACTTACCGTGGATTGATGAAGAAAATCGGTCGCCGTCGTAACTTGCTTGCATACTTGCGTAAAAACGACGTTAACCGTTACCGTGAGTTGATCAACTCTCTTGGACTTCGTCGTTAATCTGCTTTATTTTCTACTTACATTGCGTTGTCACCTTACCTCGATATACTCAAGTATAATCTTCGGTTACGGTTCCTAGCACTGTAAGGTAAAATAAACCAGATCATCTCCCTTCGGGGAGATTTTTTGTTTCACTAAAATTTTTATACAATCTTCGCCTCGTCGCCTAGTCTATAAACGTTTTATCCAGCAAGAATTATGATGCTAAGAGCTCCAAAAATCCGTATGAAAATAGGGAAAGGAAACAGTGTTCGATGAACACAAGGAGTTTCATCTTTTTCACTAGGATTTTAGCCCGAGCTCAAATCAGCTCTCTGATATTCAGAGAGCTTTTTTATTGA # Right flank : CTCAAATGGTATCAGCTAATGACACCATGAAGGTGCGCAGTTACTCGGCTTTTCAAGCCGAGTAACTGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGAATTTCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTAACTAATACAGGAGGTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAGAAATGGCATATTTATGCGGGGCAATATCTAGGAACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTGCCTGAAGAAT # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTATCGGTCATAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //