Array 1 30-2248 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMH01000004.1 Desulfovibrio porci strain PG-178-WT-4 seq4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 30 33 97.0 32 C................................ AACTCAATGCTATTACGCGCAAGCCCGGCAAG 95 33 100.0 33 ................................. AGGCGATCACGAAGCTGCTTTAGCTTTTCCATG 161 33 97.0 34 C................................ TTCGGACAATTGGTTGAGGCCGTCTCGTGTAGAG 228 33 97.0 33 C................................ ACGAACTTCGCGGGCCGTGTTGCCAATGTAGAC 294 33 100.0 34 ................................. CCGTCGCCAGATCAGTATAGCTGCACAAGTTTCT 361 33 97.0 33 T................................ TCGTCTCAATGATGACATAATCCTCCGGCAGTT 427 33 100.0 32 ................................. TTTATCCGCTACGTCTGGATCACCAGAGCCGA 492 33 97.0 33 A................................ TTTGCGTAACAGTCGCCGTCATAGGCCGCTGAG 558 33 97.0 32 A................................ AAATCCAACTCGTCAAGAATATCATACGTAGT 623 33 97.0 33 C................................ GTGAGATGCATTTGAAATACGTTCAGGCGCTGC 689 33 97.0 32 A................................ CGACCGTTACGGCCCCTGACGGTGGTTTTTCT 754 33 100.0 34 ................................. GCTCTGGTAGTGCGAGCCAAAGACGCCGGTGGCC 821 33 100.0 34 ................................. TCCGGCGTACCTACTTTCCGCATTATACACGGCG 888 33 97.0 33 C................................ CAGCGGCGTTGCTGACGGCGGAACGAGAAAAAA 954 33 97.0 33 C................................ CGTATAAGCTTAAAAAGCAGCGCGTGAAGCAGT 1020 33 97.0 36 T................................ AGGTTGACGTCCGTGGCCCCGCTGGCCGGACCTGAG 1089 33 100.0 34 ................................. AAGCGCCGCGAAGCCATGCCCGATGCCGTCCGCC 1156 33 100.0 33 ................................. ATCCACGCCCTCCTATGCCGCGCTGGTCGCGGG 1222 33 97.0 33 C................................ CGGTCTGGACGGTTACGGGCGCTGAACGGGAAA 1288 33 97.0 35 T................................ ACCGGCATGCTGGGCGGCGCTGGCCTGGCGGGCGG 1356 33 97.0 33 C................................ TCTTCGCCACGGGCCTCATCCTCCCCGATAACG 1422 33 100.0 34 ................................. TTGCCAAATATAAGCCAATCGGATGAAACGCCAA 1489 33 100.0 32 ................................. ATATCGGCCGTAGTCATCATACCAGGATTCCA 1554 33 100.0 34 ................................. TGCTGTTCCGGCGTGAGGCCGGGGACGCTGGTCA 1621 33 100.0 33 ................................. CAGCGGTTCTTGGCCCGTGTGTCTCTCCTGATA 1687 33 97.0 32 A................................ CCGCTATTCCCACACCGCCCCTGATCTCCCAG 1752 33 97.0 33 C................................ ATGGCCGACGGCAAGCTGACCGCTGAAGAACTG 1818 33 97.0 32 C................................ TGTTGGCCCGCGTTGCCAGAGACGGCGGCCTG 1883 33 97.0 33 C................................ CTGAAATCGTCAGTCAGGCTATTTCCTGTAAAT 1949 33 100.0 33 ................................. CGTCCATATCTTGGCAAACAGGGCGCGGAGGCC 2015 33 100.0 34 ................................. TGTTGGCCCGCGTTGCCAGAGACGGCGGCCTACC 2082 33 100.0 34 ................................. AGCATCACCTATTACAGCGACAACGCGGCAAAAT 2149 33 97.0 34 A................................ GAGCCCCTGGCCAGGCAGTCGGGGCCGGGCGGCA 2216 33 90.9 0 A...........................AC... | ========== ====== ====== ====== ================================= ==================================== ================== 34 33 98.1 33 GGTCGCCTCCCACGCGGAGGCGTGGATTGAAAC # Left flank : GCCCAGCAGGCCCAGCAGGCGATCCTGGCC # Right flank : CAATTCGCCAAAGGCAAGGGCGGCTGACGCCGTGGGCCGCCGCCCTTGCCTTTGCCTTGAGCCCCCTCCCGCCATTTGCTATACAAGGAACTCAGCCATTTTTTCAGGAGTTCCCATGTCCGACTTTGTGCATCTGCATTGCCATACCGAGTACAGCCTGCTGGACGGCGCCATCCGCATCAAGGATCTCTGCGCCCGCGCCAAGGATTACGGCATGCCCGCCTGCGCCATCACCGACCACGGCAATATGTTCGGCGCGGCATATTTCTACACGGCCTGCAAGGACTTCGGCGTCAAACCCATTTTCGGCTGCGAGGTCTACGTCTGCCACGACCATACGGACAAAACCTCCGAGCTGGCGCGCCGCCGCCACCACCTGATCCTGCTGGCCCGAAACGAGCTGGGCTATCACAACTTGGTCAAGCTGGTCAGTCACGGCTTTCTGGACGGTTTTTACTACAAGCCGCGCGTGGACAAGGACCTGTTGCGCCGCTACGCCG # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCCTCCCACGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37495-48585 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMH01000018.1 Desulfovibrio porci strain PG-178-WT-4 seq18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================== ================== 37495 33 100.0 34 ................................. CCGGTAGAGAATGAAAAATATACCAATGCGCAGA 37562 33 97.0 33 G................................ CACCCCTTCCCTGCCGTCGCGTCGCTTCCCGCT 37628 33 97.0 35 G................................ GTGGCTATCGGGGCCAATAGCATCATTAATAGCCT 37696 33 97.0 34 T................................ CGGGGCGAACGCGATCCAGGCTTGCGTCCGGCTC 37763 33 100.0 34 ................................. GGAACCCGTCTGGCTAATACCGAGCACTTTGCGC 37830 33 100.0 39 ................................. CAGCGTTCCTCAAACGACTCCGGCACTTCTGCAAGCCAA 37902 33 97.0 33 G................................ CAGCGTGGGTGTTGACGGACGCACAACCCGTAG 37968 33 97.0 33 T................................ GCGTGGTGGAACGTGATGGTGAGCCGTGGTTCG 38034 33 97.0 32 T................................ CACGGCACAAGGAAGAACGCTTGAAGGTGCTG 38099 33 97.0 35 A................................ GAGGTGGTCATTTTCGGGCTTGTTGATGGCGATGA 38167 33 97.0 33 T................................ GGCAGGGGGCGGGAACAGTGAATCAGGCGCGCA 38233 33 97.0 32 T................................ ATGTGCAAATCGCTTTTTCCAAGGGGGCGAAG 38298 33 97.0 34 G................................ TCGACCTGCCGCCGGAAAGCTTTGGCAACGAAAC 38365 33 97.0 34 A................................ ACCGCCGCCGTTACCGCTACTGCCCCTGCCGCCA 38432 33 97.0 34 A................................ GGGAGAAGACGTGGTGCAGGCGACTGTTGAGTTG 38499 33 100.0 33 ................................. CGACCAAGGCAGAGGCAAAAAAATGGGAGGCAG 38565 33 97.0 33 A................................ AGCCATACGCAGATACGAAGTGGCGAAGTCAAG 38631 33 100.0 33 ................................. TTCATAACCATGAGATTCATATTTTCGCCGCAT 38697 33 97.0 32 A................................ TCTGGCGCTGAACGCTTCCTCTTTCCCGGCCT 38762 33 97.0 33 T................................ GGCGTAGCGGGCCACCACGCTGGCGGGCATTTT 38828 33 97.0 35 .C............................... ATCGAGACGGCCCGCAAGAACGCCGAAGCCGTGGC 38896 33 100.0 34 ................................. TAGAAATACCATCTACCCTGAAATCACAAAGAGG 38963 33 100.0 34 ................................. ATGGTGACGGCGCCGGGGTGGCAGGTGGTGCGCA 39030 33 97.0 33 G................................ TCTGTGTGATTCTGAACAGTATACGGCGGCCAG 39096 33 97.0 33 T................................ CCTTAATCAAAGACGCCTGAGTCCAGAAGAGAA 39162 33 97.0 33 A................................ AGAGTGCTGGTGTGGACGCCGCAAGCGTGGAGG 39228 33 97.0 33 .C............................... TTTGTCCGCTACGTCTGGATCACCAGAGCCGAA 39294 33 97.0 34 .A............................... TCCTCAGGCGTACAACACGGCCGACACGAGCAAT 39361 33 97.0 34 A................................ TCCGAAAAAGTCCCGTATCGGCTGAAGCACCTTG 39428 33 97.0 34 A................................ CCGACGAATCGGTATTGTATTAGCCCACACCCGG 39495 33 97.0 34 A................................ TGTTCTCCAGATATATCCACCATCTATTCTTGGT 39562 33 97.0 34 G................................ GCCTTGAGGAAGGCGAAAAAGCCTCGGATGCCGT 39629 33 100.0 33 ................................. CCTGTACCAGAAAAAACTCTCGTTTGCATTCGT 39695 33 100.0 34 ................................. CGGCAGCAATAAGCTTAAGGACGCTTTGTGCTGC 39762 33 97.0 38 T................................ GTCATCATTCCCGCCGCCGGTTCCGCCACATCCGCCCA 39833 33 97.0 32 A................................ GTCATCAATGTGACGCAACTGCCGGACGATTA 39898 33 100.0 32 ................................. ATCGTGCTCATGGACGAATATGACGTCGTTCG 39963 33 97.0 33 G................................ CTCTCTTCTCTTCCCACCGCCATTGACGCGCTC 40029 33 97.0 34 T................................ CCACGGCGGCGGCGGCCAGCGCGGCCACGGCTAC 40096 33 97.0 32 G................................ TTCTTTGACCGAGAGGAACCGTTTCAGTGGGA 40161 33 100.0 34 ................................. AGCTCCACGTGGATGCCCGCCCAGGAGCCTTGGT 40228 33 100.0 34 ................................. CGTCTGGCAAGCTCATGAGCAAGAGCGGTGCAGA 40295 33 100.0 32 ................................. TCTTCTCTGTTGCTTATGTTATGCAGTATGTG 40360 33 97.0 33 A................................ AACCGCCGTGGTCTGGCTCGCCTGACCTCTATC 40426 33 97.0 33 A................................ TTCTTGCACTGAGGAGAGATGCTCTGCAGTACG 40492 33 100.0 36 ................................. CACGTCAAAGTCACGGGCCATATGCCAGTAATTGAG 40561 33 93.9 37 AA............................... CACGTTTGTCCAAGTATTATTGCAAAGGCAGTTATAG 40631 33 97.0 34 G................................ CACGACCCATCCGTTTAACTCTCCACCAGATCTA 40698 33 97.0 32 A................................ CTGAAAGCCCTTCGTCTGCGTCAGGAGGACGG 40763 33 100.0 32 ................................. TGGATGCCCTGAGCGAGATGTTCGGCGGCAAG 40828 33 97.0 35 G................................ TGATGCTGTGCCGCCGCGTGGGTCAGCCAGAGCGC 40896 33 97.0 32 G................................ AGTGTGTTACGCATTTTGCGATTGGAACGCGG 40961 33 97.0 33 G................................ CCGCCTACTACGACGCCGCCACCGATCCCGGCA 41027 33 100.0 34 ................................. AGGGGCTGATATAGAGGAGGCATCATGAGTCAGG 41094 33 97.0 34 A................................ ATGAGCTTGCCCATTCCACAGGCCATCAGAGCCG 41161 33 97.0 33 T................................ TGCGGAAGCTATATAGTGGTCGCCCAGCCGCTC 41227 33 100.0 32 ................................. CCCTGAAAAAGCAGGCGGCCACGGAACAGGAT 41292 33 97.0 32 A................................ GCCCACAGTGCCGGATCATGTGCGGCTCAGCC 41357 33 97.0 35 A................................ ATCAGCGGGAAATCCGGCAAGCTGACGGAAGGAAG 41425 33 100.0 35 ................................. ATCGACGGCGATCCTATGTTTGATTTGCAAGAGCA 41493 33 100.0 33 ................................. AGGGCATGGGCCGAAGACGTTGGCCAGCGCGGG 41559 33 100.0 33 ................................. TTGACGTATATGGCCGAAAGATCTTTGGGCGCA 41625 33 97.0 34 A................................ TGGACTCAGGCGTCTTTGAAGAGCTACTTTTGCT 41692 33 97.0 35 T................................ TTGGCAAAAGGAATTGGAACACATAGGCCAGCAGG 41760 33 97.0 33 A................................ GCATAATCCATATCCAAAGCGTGTTGGTAATCG 41826 33 100.0 32 ................................. TGGTATCATCGCTCCAGCAACAAAAGCCGGAA 41891 33 93.9 33 TC............................... TCCTTGGAAGCCCGCTGATTATGGATACCCTGA 41957 33 100.0 40 ................................. TCTCAGCTCTTCTCCCTGCGCAAAACTGGCAAAGGCGGCG 42030 33 93.9 33 GC............................... TCTCAGCTCAGTGTTGCTCCATCCGGCCTCTAC 42096 33 97.0 34 A................................ ATCCACGTCCGGCCAGTGTATGCCGCTGCCCCTG 42163 33 100.0 34 ................................. GCGCCGTCGGCCACGAGTACGGTGGTTTTTAACC 42230 33 100.0 33 ................................. TCCCCCTTTTGTTGATTAAAATATAATAGCAAT 42296 33 97.0 34 T................................ AATTACTCTGACGAGGTGGCGCGGCTGGCGCAGG 42363 33 97.0 32 A................................ AACCGCGCCGTGGCCTTTGCCCTGCTTAATGT 42428 33 97.0 33 G................................ AGGGCGATCATAGTGCAGGGGGAGGGCAACAGG 42494 33 97.0 35 A................................ CTCTTCTCCCTGCGCAAAACTGGCAAAGGCGGCGG 42562 33 100.0 33 ................................. CTGTCCCAAGCATACCAATCACCAGAATAAGGA 42628 33 97.0 32 T................................ GCTCTACAGCGTCCACGCTGCTTAACGAACTG 42693 33 97.0 32 G................................ GGCGGCTCCGTCGTCCACGCCAGCCCCGGACG 42758 33 100.0 33 ................................. TCCTTGACGCTTACGCGTTTGACCATACCCGAG 42824 33 100.0 35 ................................. AAAATGATGCCATCCGGCTCAACATGGATGCCACC 42892 33 100.0 34 ................................. ATGGCTGATGCTCGTGGTCAGCTGGGCGTAGCGC 42959 33 93.9 35 TA............................... CAGTCAGCCAGCGGCGCTCAATACGGGCGACAAGA 43027 33 97.0 33 A................................ AGCTTGCGACATGGTGCAAACTCCTATGGTTGA 43093 33 93.9 34 GA............................... TCTACTGTTACTGCGCTGTCTGACGTAGCGTCGG 43160 33 100.0 33 ................................. TCGTCCACCCGCACAGGCACATTGCCCTTGGGC 43226 33 97.0 33 A................................ ATGTCACCGAACATACTCAATTGCACGTATGAC 43292 33 97.0 34 G................................ TTGCGCGTATTGCAAAGCATCTCTCCTCAGTGCA 43359 33 97.0 33 A................................ CGACTGAACAGCATAAAAGCATATGCTGCCTTG 43425 33 97.0 34 A................................ ATTCCCAGCCACTCTTTGCCAATACCACCCCGGT 43492 33 97.0 34 A................................ CAGTGTCGTGACCGGACCGGGATTTTCCGGCGCC 43559 33 97.0 33 G................................ GCCAAAAATGCTGACCCAGCAAAGAGGCGAAGA 43625 33 97.0 34 A................................ TTCAGGATTACAACGAAGACGCTATTGAGCTTCG 43692 33 100.0 32 ................................. CGCCTGCAAGTACGTCTACACATCCGGCCAAT 43757 33 100.0 34 ................................. CGGCTGTGATAGGGGCCGCTCCAGCCGTCGCAGG 43824 33 97.0 32 T................................ ACCGAAGCGCTCTCGTCGTCTTTTGGCCCGGG 43889 33 100.0 32 ................................. TGACGAGCGGCACCTGTGGCCCGCTTTCCACT 43954 33 93.9 32 AC............................... AATTTTGGTCTGCAGAGCCACGAGCGCGATAA 44019 33 97.0 32 G................................ AGTGAGGTACTCCAAACCGCTGAAGGTACTGA 44084 33 100.0 34 ................................. AGAATATTTAACACAAGAGACAAGCTATGAAAAA 44151 33 97.0 35 G................................ ACCGGCTACACCGGTCAGGCCATCCTTGTGAACCG 44219 33 100.0 35 ................................. GGGGCTGTGTTAAGCAACATGGCGGAAGCACTGAA 44287 33 97.0 33 T................................ AAGCTGATCTCCCAGCCACCGCACCATGGCCAC 44353 33 100.0 33 ................................. CACCTGAAAAATATTGCTCCACACCCATAGCCA 44419 33 97.0 34 G................................ ACCACGAACACATCTGTGATAGATGAAGCGATGG 44486 33 100.0 33 ................................. CGGTAGGTAGGCAGGTTCGAGATCAGCTTTTGT 44552 33 100.0 34 ................................. CCGAGCCGCGCGGCGGCGTCCGCCCAGTCCTGAC 44619 33 97.0 32 G................................ CCGGCCAGTTCAACGTCAACATGGCCATGTTG 44684 33 97.0 34 G................................ TCAGCCTGCTTTCACTGATGCCGAAATTGCCGCC 44751 33 97.0 35 G................................ CGTCCACTCTGGCCTTGGCTTCTTTATCCGCTACG 44819 33 97.0 34 T................................ AGCCTCACAGTTGAAGTTGTGGCCCGGCATGAGG 44886 33 100.0 35 ................................. TTTATCCGCTACGTCTGGATCACCAGAGCCGAACA 44954 33 97.0 33 T................................ CCGGTACAGGGGGTTTTGCCCCGCCGGGAAAAC 45020 33 97.0 33 G................................ TGGATCTTGCGTACAATAGACGTGTCCAGTCGT 45086 33 100.0 35 ................................. CCTATGAAGACGGAGGCCACGTGAAAGCGGTTCCG 45154 33 100.0 34 ................................. TTGACGTATATGGCCGAAAGATCTTTGGGCGCAA 45221 33 100.0 34 ................................. CGTGCCTACCGAGCGCATCTTTGCCGCTCAGAAA 45288 33 97.0 34 A................................ TTGATAAGTGAAATGAGTTCGTCAAGGGCTCCAT 45355 33 97.0 33 A................................ ACGGCCTTCAGGGGTTAACGTAGCCATATATAT 45421 33 100.0 33 ................................. ATCTCAAGTGTGGTCATAATGAAACCTCTCGCT 45487 33 97.0 34 G................................ TGAACATGGCCTTCAATCTGGGCGTGGACGGCCT 45554 33 97.0 33 G................................ GTGACTTCAGCACCGACCGCCGCATAGGCGATA 45620 33 97.0 32 G................................ TGGACAATAATGCGTCGACGATCGGCGAAGGT 45685 33 97.0 32 T................................ CTGGCGGCGGCGTCCGATATACCTATCGCTCG 45750 33 97.0 33 T................................ TGTACTGTGGCGAGTGACAGCGAGACCCCCCCC 45816 33 100.0 33 ................................. CGTATAAGCTTAAAAAGCAGCGCGTGAAGCAGT 45882 33 97.0 32 T................................ TGTCCATCTATTACACTACGAGTTGTACGGCC 45947 33 97.0 34 G................................ GTTGCAAAGCCATGACCGTGGTAGTGTCAGCACC 46014 33 97.0 33 G................................ CTCAGCCTGCTTTCACTGATGCCGAAATTGCCG 46080 33 100.0 33 ................................. TAAAATAAAACATACCCATACCCCTCTCACCCG 46146 33 97.0 33 A................................ TCTTGGTACGCAACAGGGCGCGTATCAGCTGGT 46212 33 100.0 35 ................................. TCCCGCTGGCTCAGTACAGTTTGCTCGCCAATACT 46280 33 100.0 35 ................................. TTCCTTGGAAGCCCGCTGATTATGGATACCCTGAC 46348 33 97.0 34 G................................ TCACAGTCATGAAGGCGTAGAGCCGGGATCTGGC 46415 33 97.0 33 A................................ TCAGCTCCGGACAATGCGACTACGAAAGCAGAG 46481 33 100.0 33 ................................. ATGTGGCGATTGCTAAGGGCCGGGAGCACGAGA 46547 33 97.0 35 A................................ TCATACTTATCTTTGCCACGGTAGTTAGCCGTGGT 46615 33 97.0 34 T................................ TCCTGTGACGTAATATGTCTTTTCCGCGTGGTAG 46682 33 97.0 32 A................................ AAAATGAGTCTGACAAAAAAATTTCTCAAAAA 46747 33 97.0 32 A................................ TTCCAAGCCCACAACGATCGTACGTGCGTTGG 46812 33 97.0 35 T................................ ACGTGCGATAGCGGACTGGACAAGGAGGATCAAGG 46880 33 100.0 33 ................................. CCATTGGAGATTGGCGGCAGCGTTAAAGCCAGT 46946 33 100.0 35 ................................. ACGCGCCTGTGAAATTATTCCGGCGCGCGGATAAG 47014 33 97.0 32 A................................ GACCAATCCAGCTTCGCCGGGCTGCAGCGGGC 47079 33 100.0 33 ................................. AATGCCTCGTGAAGGGTCATACAGCCTCCATAG 47145 33 97.0 35 T................................ TTTGACCAATCCGGAAATTGAAGCGGGATACTCCG 47213 33 97.0 34 A................................ TTGATGTATATGGACGAAAGATCTTTGGGCGCAA 47280 33 100.0 35 ................................. CGGTACAGGGGTTTTGCCCCGCCGGGAAAACGGCC 47348 33 100.0 34 ................................. ATCATAGACGAGGCGACGAGGATAAAGAATCCCA 47415 33 97.0 34 A................................ ATCCCATGGAGAAAAAACCATGTCCCAAACTCCC 47482 33 97.0 34 G................................ GTTGGGATGAGCCGCCGGACGACGGTCATCCTGG 47549 33 100.0 34 ................................. GGTCAGTAGAGGGACTACTGCATTGGCTCCCACC 47616 33 97.0 36 G................................ GGCTGGCTGTTTGATAAATTCGGTAAAGGACTGGAT 47685 33 97.0 33 A................................ CCCTGTGGCGTGTTTGCCGCCACGGACGGCAGG 47751 33 100.0 32 ................................. ACCACTGCCCGCCCTTGGCCTCAGAAAGGTAT 47816 33 97.0 34 G................................ GTGCAAATCCTCGCCATCCAATGCGCGCACACGG 47883 33 100.0 35 ................................. TTTGGGGGCGGCCTGTCCGGTCTGCAAACCCTTGA 47951 33 97.0 33 G................................ TCAGCCTGCTTTCACTGATGCCGAAATTGCCGC 48017 33 100.0 37 ................................. ATCTTCGTAACGAAGGCAGGCGTTGATTGGCCCCCTG 48087 33 97.0 34 A................................ TGGAGCGGGCCGCCGATCTGGGCGATCTGTCAGG 48154 33 97.0 34 G................................ TTATCAGGACATGTGCAACTACGCCCGGCGTGGT 48221 33 100.0 34 ................................. ACGGATATCAATGCGACGGACCAGGAGACGCGTC 48288 33 97.0 33 A................................ TCTTTGGTTATGCCTCCATGGATAACGCCCACT 48354 33 97.0 32 G................................ CCAGCGTTGACGTAGGCATTGTATTCTTGCAC 48419 33 100.0 34 ................................. TCCTCAGGCGTACAACACGGCCGACACGGGCAAT 48486 33 97.0 34 A................................ AAGCAACTTGCCGGCATCGAGCCGTCTCCGCTGA 48553 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================== ================== 167 33 97.9 34 CGTCGCCTCCCACGCGGAGGCGTGGATTGAAAC # Left flank : ACGCCTACCCGCCCTTTGTCATCAGGTGACGCATGCTTGTCCTGGTGAGCTATGACGTCAATACGGAAGACGCGGCGGGGCGGCGGCGCCTGCGGCGCATTGCCCGGCATTGCCAGAACTGGGGACAGCGCGTGCAATTCTCTGTTTTTGAATGCGCCGTGGATCCGGCGCAGTGGAAAAACCTGCGCGCGGCGCTGCTCAATGAGATGGATCAGGACAAGGACAGCCTGCGCTTTTATTTTCTCGGCAGCTCCTGGCGGGGCAAGATAGAGCACTGGGGCGTTAAGCCGGGCTACGATCCTGAGGGGCCGTTGATTTTCTGAAGCGGGGACCTCAAGTTGACGGCTTTTTGCAGGAAGATCCGCGATACATCCAGCATATTGGAATATAACACAATAATTGTATAGCTATAAAAAATACGGAAAGCCGGGCAGCGCCAAACGGCAGATTCCCGAAATGGCCCCCGCAAAACCTTTATGCGCGCAGGCTGAGGCCTGCCA # Right flank : CTGGCCCAGCAGGCCCAGCAGGCGATCC # Questionable array : NO Score: 8.61 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCCTCCCACGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.01,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //