Array 1 162281-162824 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUB01000001.1 Nodularia sp. NIES-3585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 162281 37 100.0 36 ..................................... CATGCGTTTCTATTAACACTGGATTTTCTTTAAATA 162354 37 100.0 38 ..................................... GGGTAGTTGGTAAAAATGGGATTTGTAGCCCCGGTAAT 162429 37 100.0 35 ..................................... TACCATTGGCTCCAGGTCTGCCTTGTGCGCCAGTT 162501 37 100.0 33 ..................................... AGAAGTTCCTGAAGAGGTATTTCAGCTATTTAA 162571 37 100.0 34 ..................................... CAAGCTTAGATCCGCGAAACATCAAACCTTGGAG 162642 37 100.0 37 ..................................... ATCGCTTTGTAATTCTCTGGCTCAAATTCAGGATATT 162716 37 100.0 35 ..................................... TGACTGAGGTTAATAGTCGCTTCAGCTTTCTTGTT 162788 37 94.6 0 .........T.C......................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.3 36 GTTGAAAAAGCTCATAATCCCTATCAGGGATTGAAAC # Left flank : GGTAGAATTACAGGTATGACCCGTTATGCTTGTTTTTGGGTAGAAAACGGTGAAATCGTCGCCCCCATTGAAAATTTACGCTTTGACGAAAGTCTCTATCGCTTCTGGGGAGAAAATCTAGTAGAGTTTACCAATTTTCAGGAATTTATCCCCGAAGTCGGAACCTACGAAAGTCGCCAACTAGGAGGTAGTTTAGTTCCGGGGATGTTGGTAAATGATTTCACATACACCTTGTAATTTTCTTGTAATTTGCGTCAATGGGTAGGTGTTGGCGAAGGGTGATGAAAAATTGTGGCTGTATTGTTTGCTGTACAAAGGTTTGGAGGCAAATGGAGATAAAATCGGTTGACGCAATCGCTGTAACCCTTGATATCACGTGATTTCTGCTAAAATTTTATCCACCCTCTTGACGATACCTAATCCTGAAATGCTATTATCTTTAGAGGTTGACGCAATTGAACCTTGAAAACCAAATATAGTGAATCTTCCAAGTCTGGGCA # Right flank : CTCCGGAAATTCTTAGGGGATGTTGCCCCATACCCATTACCCTGGAAAATATACTAAAATCAATGACTTGAGTCATAAAGAGAGCAATCATGGCATCCATCCGCGAGTTGCACGAACAGCTAATTAGAAAAGAATGTTCTGCTGTTGAAATTACCCAAGAAGCTTTAGAGCGTATTCAAGCATTAGAACCGAAATTACACAGTTTCTTACACGTGACGACAGAAAAGGCATTAGAACAGGCTCGTGCTGTGGATGCTAAAATCGCTGCTGGCGAAGAAATTGGAATGCTAGCAGGGATTCCCATTGGCATTAAAGATAATTTGTGTACTCAGGGGATTCCGACTACTTGCGCTTCTCGGATTTTAGAAAATTTTGTGCCGCCCTATGAATCAACAGCAACACAAAAATTGATTGATGCTGGTTCTGTAATCATCGGCAAAACCAACTTAGATGAGTTTGGTATGGGTAGTTCTACAGAAAATTCTGCCTACCAAATTACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAAGCTCATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 299326-300303 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUB01000001.1 Nodularia sp. NIES-3585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 299326 36 100.0 41 .................................... GCGCTTGAGCAGCAGGCCATGGAACGGCAAGAACGTGAAAA 299403 36 100.0 36 .................................... TTATCGGTACAATTAAGTACTGAAAGTAAAATCTCA 299475 36 100.0 36 .................................... ACCCGTATTACGATGAATTCAGCACCGGTCTGCAAA 299547 36 100.0 36 .................................... CACAGCCCGGGTTTAACGGTACATCGATTTACACTC 299619 36 100.0 39 .................................... AGCATTACGAGCCGCTCAATTTGCACGAAATCGATCCAC 299694 36 100.0 35 .................................... TCCTGCTGCATTTCAGCAGGGAGATAGTAGCTATT 299765 36 100.0 34 .................................... ATAAAACAGTAGCATGGGAAAGTGGTCAGAAAAC 299835 36 100.0 40 .................................... TTACTAACTGCATCCAGCATATGCTGGAACCATCCAGAAG 299911 36 100.0 37 .................................... ATCATCGTCAACGTGTTTCAACAAATTTTAACGCTGA 299984 36 100.0 35 .................................... AATTTCCAGAGATTTTGTCCAAAGTAGAAAATTTA 300055 36 100.0 34 .................................... GTGCAGAGGGTGATACAAACCTGTGTTCCTGATC 300125 36 100.0 40 .................................... ACGCACAGCGTTCAATGGCAAGAATTCTGGATGCCTTTCC 300201 36 100.0 31 .................................... GTTAGAATATATTCCCAAAAGGCTCTATATT 300268 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 14 36 100.0 37 GTTTCCATCCCCGTTAGGGGAAGAGGTTATGGAAAG # Left flank : TATCCAAACCAGCAAAATTCCAGCTTGAAGATAATAAGTAGCTTTTTCGATCATGTCTCCAAAAGTTTGACCAGGAGAAATAATTTCGATAACTAATTCTGGGATAACAGGACAAGCTTCATCTTCAAGCCAGTCAGCAGGAAGACGGTTATAGGAAATGTAGGTTAAATCAGGGACGGGTATCCAATTTTCTTGATTTCTTGTTAATTTTATCCCCCATTCCACGACAACGCGACCTTTTGCTTGCGCCCATGTGGATAATAGGATAAATAATGCTCCTGTGGTTGCGCCATGAAAAAATTTAGGAGACATTTGCTCATTTTTATATTTCGGTACAGCTTCACCGTCAACAAACTCATAAGCAAGTTCACTTTCGGGAAGTGCAAGAAATTCTTCGAGAGTGAGTTTGGTTTTTAGTTGAGTCATGGTTAGTTTTGGTGGGTTCAATATTCCCGACTTCTATGATAACTGAAGTTCGGTTTAGACCCGGATTTCTTACT # Right flank : GAGTTCACTTCTGGAAGCCTTGCTAGGAGAGGGTTTGAGATACCCGAATCGACACCAGTTTTTGCACTGTCAATAAGTCCCAAAAATTTCTCAATAGCTCGTGAACTTTAGAGGCTGGAAAGCTTACTGTGCAAGCAATCGACACCAGTTAACGAAATTATGCGGTTTTCAAGGTTCGGGGGAGTGGTGTCGATGAGTTTTAACTCACCTCATAAAATGTAAAATATATGACCTGAAATTGTCAAGTAGTCTTCTGCAACTATTTCGGCGATAAAGACTAAATTACCTTTCTTTTTCTTCCCACCTTTGCGCCTTTGCGCCTAACGTACTTCGTACTAGAGCTTACAGCACGCTACGCGAACGCTAGAGCCTCCGGCACACTTCGTGAACGCTAATGCGTGAACCTAATTTATCACCCTTATGCCTCAGACAAGGCAAAATAAAGATAGTATGAGTGCCAAACCTCCATGAGTTATTGCCTAAATTCCCATTGTCCCCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTTAGGGGAAGAGGTTATGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 1648982-1650321 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUB01000001.1 Nodularia sp. NIES-3585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 1648982 37 100.0 33 ..................................... TGGAATATATATGCTTTTTGTGGCGACTGGCAA 1649052 37 100.0 35 ..................................... TCAATCATGTTACAAGTAGGCTATCTAAGCCTTGG 1649124 37 100.0 35 ..................................... CTGATTAACTAGAACCACATTAAGTTCTGCCGCAA 1649196 37 100.0 45 ..................................... GGGATTTTCCCACCAATTAAATGGCATAAGATAGGTGCAATATCA 1649278 37 100.0 34 ..................................... GGGATTTTCCCGATCCCAAGTCCCCCAATGCCGG 1649349 37 100.0 36 ..................................... AAATCGCCGCCAGAAATATTAACCGCTTGCTCGAAA 1649422 37 100.0 34 ..................................... TCATTCCTATTCAGGATTACGTGAAATCCAAATC 1649493 37 100.0 36 ..................................... TTTGTAATAGCTCTTAAGGTGATTGCTCACATTCAA 1649566 37 100.0 30 ..................................... ATACAGGAGATTGGCTAGCCCGATCGCTAG 1649633 37 100.0 35 ..................................... GACCTGACTTTTTTCAATGGGATTGCCACTTGAAT 1649705 37 100.0 34 ..................................... TTGGCTCAGATGAAATGAAAGTAATTGAACTAGA 1649776 37 100.0 36 ..................................... AAAATCGCGTAACTTTTACGCAAAACTTACACAATC 1649849 37 100.0 37 ..................................... ACAAAGCTTCCAGCCCTTCACGATACTGCATCCTGAA 1649923 37 100.0 38 ..................................... AAAAATACTAAATTTGAAGAATCGGCGGAGTATATTAC 1649998 37 100.0 34 ..................................... TGCCAGCTTTGTTGTTGTGCCGTGCCAGTTGATT 1650069 37 100.0 35 ..................................... CCAAAATTACATCCTTGGTCAATGATGTCCAAATC 1650141 37 100.0 35 ..................................... ATTTGTTCCTGGATTTGTTGCGAAAATGTATGTAG 1650213 37 100.0 35 ..................................... GCGTACAGGTGCGAGAGTTTGTGAAAAATTACCGC 1650285 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 19 37 100.0 35 GTGAAAATCACAAATAATCCCTATTAGGGATTGAAAC # Left flank : AACACCCCAAAACCAATATTGTGGGCATCATAAAGATATACCCAGCTAAGGTTTCGGTAATATTCCATCTGGGGTTTATTCGCCGTCTCCGAATTGGCAGCACCATTGAACCTTCCTGTAGTTTAGTCTCAGACTGGTGGTGGCGAGTTCGCTCGTGGATAACTTTCGATGGTAGCTTGAGCCAGAAGCACAGAAATATATCTAAATGCTGTTTTTGCTATGGTTGGAAGTAGGGATTTTTGGTTGATTCAGCGTCAACCAGTAGGTGTTTTTTTGAACATTGAAAATTTTACGCCTGAAATCCTTACCTGATCTGGTTTTGAACCCTCTCACACCTAAATTGAGGTTGACGCAAATCCCCAAACCCTTGCTATCAAAGCTTTTGAGCTATTTTTAAAATGTCCCTCTTGACAACCCAATCGCTGAAAAGCTATATTTGTTTTAGGTTGACGGAACAGCACCTTGAAAACCAAATATATCAATGCTTCCAGATGCGGGCT # Right flank : CCCCAAACCTGAAAATCAGAAAGTGCTGAGTTAGGATAAAAAACATGGATTTTGTTGGTTTAATTCCTAAAAAGTGGTGCGCCGCAGCAAGAGGGGAGCAAGCGTTCCTCCCCTGGCATTTGCAATGATGCGCTTTGAAACCTAAAATTAACAATCAGGTCGTTGAATAATGCTTTCTAAAACTCGTCGTTTTGCATTCGGATCAATGCCAAACAGGCGAACATATTCATTATTATGTTCTGATAAACAAGCTGATAAAGCTGCGATCGCTTCATTTTCGTCCTGAGTCTGAACTGTGGCACAGCTAGCCCAGGAACCTGTACGGAAACGACGCTGATCTACGTGTTCTAAACCTATACGGTAGCCTTGAGTTAGCAAGTTTCTTAATTGCCCAAGCACATCTTCACTGATATTTGTTTTGGCTGCTTTGCCGTTACCGTTACTATATGGCTGGGGTTCAGTTTTACCAACTTCTTGACGTTGGGTAGAACCATTTCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAATCACAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 4 2290893-2289471 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUB01000001.1 Nodularia sp. NIES-3585, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================================================================================================== ================== 2290892 37 100.0 34 ..................................... GTACAAAGCCTCAACAGAACCTAATTCTCAAATT 2290821 37 100.0 35 ..................................... TAAAGGATAAATAAGACAAATTGGCTCAGATTCTT 2290749 37 100.0 35 ..................................... CAGCTATTCCCGCAGCAAATAAAGCCGACAAAGCT 2290677 37 100.0 35 ..................................... CGGGAATTAGAAGCACTACCCGAACCCAAGAACCA 2290605 37 100.0 34 ..................................... GCAAAACTGAAGAAACTACGGCAACTTGTTTTTT 2290534 37 100.0 34 ..................................... CTTTGATATCAGTGTATGGTTCTGCGCCCCTTTC 2290463 37 100.0 36 ..................................... AATGACTAAAGGGGACAAAACTTTTTACCAAGTAAG 2290390 37 100.0 35 ..................................... ACAGACATTGAGTTTAAATCATCTGTTAATCTCAT 2290318 37 100.0 33 ..................................... GGGTGAGCAATTGGGCGGCGTTGACCTTAATAC 2290248 37 100.0 35 ..................................... TCGTCTCAGGCTGACAATAGCGTAATCTTCTACCG 2290176 37 100.0 34 ..................................... CAAATTCTTTACCCTGGATAATGGTCTTGCCCAG 2290105 37 100.0 35 ..................................... GTGTAATATATGAATAAATTTCCTATTTGTCCTAT 2290033 37 100.0 30 ..................................... ATCAGGAATGCGTAGTAATCTATCCTCAAA 2289966 37 100.0 33 ..................................... TAAAGAAGCTTATAGCGAATATTATTCAAAATA 2289896 37 100.0 35 ..................................... CATTGCCAGAATTTGATTAATCTCATTTCCAGGGT 2289824 37 100.0 39 ..................................... ATGTGGAACATTTGCGATCGCTCGTCCAGCAATGCCAAG 2289748 37 100.0 34 ..................................... GATGATTATATTTCTGCTGCTTTATCTAATCCTG 2289677 37 97.3 133 ...................................G. ACAGATGTAGACTTTGCAGGTTACAGCCAAACAAAACGCTATAACAAGACAAGGCTATATTTTAGTTCGAGCATTTAAAAACTAGATGAATTCTGCAAAGATTACACCATTTTTTCCATATTTAATGCCTAAT 2289507 36 73.0 0 A..G.T.....G........A-..A..CA.......A | T [2289473] ========== ====== ====== ====== ===================================== ===================================================================================================================================== ================== 19 37 98.4 40 GTTACAATTACCAATAATCCCTATTAGGGATTGAAAC # Left flank : CAGATGTATCTAACTTGTAGCGCACTTGCATAGGTATGCAGCGCAGGGAGTCTACAAAGTCTGCTTCAAATTCAAAGAATTCTGCCATAATTTTAAGATAGTGTAAAGCTGTGACCAATAGTTCCTTCATGGTACAAGCTCCCAGGTTTATCTGTGGGTGGAAGCAAAATCTCAAATCCCCAAATGTTTGCGGAATTAGTGATTAGAGTCCTGGCGATCGCCTTTTTTTAGTAGAATTTCAAATGAGTTTTGCGTCAACCAGTAGGTGTTTTTTTGAACATTGAAAATTTTGTGTCTGTAATCCTTACCTGATCTGGCTTTGAACTCTCTTATACCTAAATTGAGGTTGACGCAAACCCCGAAACACTTGATATAAATGGTTTTGAGCTATTTTTAAAATGTCTCTCTTGACAACCCAATCGCTGAAAAGCTATATTTGTTTTAGGTTGACGAAACAGCACCTTGAAAACCAAATATATCAATGCTTCCAGATGCGGGCA # Right flank : GATAAAACTGCAACTCCTAGACCAATAATAGTACTACCTGTGACTTTTTCTAAATCAAGAATAATAATTTTTCGTGCAACTGCAATTAAAGAAGTAACAATGACTAACTCAACGTGTACAACGTGTTTTCGCAGATAAGCTGTGATATTTTCTAATATCTCTAAAGCGATTAAAACGTTTAAAAATAAACCAAAAATTGTAAATAATACTTGATTGAATTGACCATAACTGCTAGCAAATAATTGATTGATTAGGTAAACACCTAAATCAATGATTGCGGCTACAATTACCACTACCATTGCCAGTGATAATACCTTAGCGACAAGCACCTCAATATTTTCTATGAGATGCATAAAATTTTCTTCTCTAGCAAGATTCCCAATTTTTCTGAATAGATGCCTCATTTGCCATAATTTAAGCGGTTAAAAATAATCTTAAATCTTTGGTGTCAAAAGTTGGTGAAAAATCAGTAATTTGGAACCTTTGTAAAAAGTAGGCGT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:-0.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTACCAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 5 2811667-2812943 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUB01000001.1 Nodularia sp. NIES-3585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2811667 37 100.0 34 ..................................... ACAAAATTAGTCCGTGGAATATACGAAGAAATGG 2811738 37 100.0 34 ..................................... AGCTGATGCCTCAGACTTAGCCTTAGACTATTTC 2811809 37 100.0 33 ..................................... CCGCGCCAAGGTAGCGGCGGCAGTAGTCGATGA 2811879 37 100.0 40 ..................................... ATAGAAATCTTTGTGAATATCTAGATAAACAGTGGTAGTT 2811956 37 100.0 37 ..................................... AAAAAAAGAGTATTAATCTTCAAATCGCTAACCTCAA 2812030 37 100.0 35 ..................................... CCTTCGGTGGTGTTCTTGGGTTCGTTGGCTGTGCC 2812102 37 100.0 36 ..................................... CATTTCCCATCATTTGAGACAATTAATTCGGGAAAA 2812175 37 100.0 37 ..................................... ACAAACAAAAGCAATGGCAGGACTAGCCACAGCTAAA 2812249 37 100.0 35 ..................................... CTATAATTATTCCTGTTGGTGGTATTGAGTGGCCT 2812321 37 100.0 38 ..................................... CCGAAAGGGTAAATCAGCAGTAGGAGTGGCAAAGCTAG 2812396 37 100.0 35 ..................................... ACAACTCGCTGTAGTTATATTTGTTCCTGAGCTTC 2812468 37 100.0 41 ..................................... CCAATTATGGAAATGTGACCATTAGGAAGTAGGGAGGTTAC 2812546 37 100.0 35 ..................................... CCATCCGCACCACGAAATTCTATGCCCATTGCCTC 2812618 37 100.0 35 ..................................... AACCGGGAAAGCCTTTGATACTGTGCTTAAAAATT 2812690 37 100.0 34 ..................................... AGCGGGACGGATTGTAAATACCGCCCGTGGCTAT 2812761 37 100.0 33 ..................................... GATTGAGATTGCTGGAGGGGTCATTCTCCACGC 2812831 37 100.0 39 ..................................... GCAAAGACTAAACTTTGATTCAATTTATTTCTATGGCGA 2812907 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 100.0 36 GTTCCAATTACTAATAATCCCTATCAGGGATTGAAAC # Left flank : TCAGAAGACAAGCGCCGCACCAAAATTCACAAGATTCTCAAATCTTACGGACAGTGGATGCAATATTCTGTATTTGAGTGCGACTTAACCCAGACTCAGTATGCTAAACTGCGATCGCGCTTGTCTAAAATCATCAAACCCAACGAAGACAACATCCGCTTTTATTTCCTCTGTGCTTGCTGTCAGGGCAAAGTTGAGCGCATCGGCGGTGATATGCCGAGAGACACGACAGTATTTTTTGCCTGAGTTTTGCGTCAACCAGTAGGTGTTTTTTTGAACATTGAAAATTTTCCGCCTGAAATCCATACCTCATCTGGTTTTGAACCCTCTCACACCTAATTTGAGGTTGACGCAAATTCCCAAACCCTTGCTATCAAAGCTTTTGAGCTATTTTTAAAATGTGCCTCTTGACAACGCGATCGCTGAAAAGCTATATTCATTTTAGATTGACGAAACAGCACCTTGAAAACCAAATATATCAACGCTTTCAACTGCGGGCG # Right flank : CTGGAGCGTTTTTATATAATATTTGCTTTGCGCCTACAGCGGTTTCCAATTATATAAGGTACATCTTAGCCCCCTCATCGCTTGCGGGGAGGGGGTTGGGGGTGGGGTTCTTGTACCTCATAACACCAAAAAGCGCTGTAAATTCGTGCTTTGCTAATGCGCGAGACTAATTCTTAAAACAAAATCAACCTCCCACAAAAATATTATTTGCAAAAGGTTGATTAAGTTCGATTAAAAATTACTGCTCAATAATCGGAAGAATAGGCTCAAAAACTTCAGGCTCAGGATTGAGAACATACTGCCAATTCTGAATTTGCTGTTGCGCCGCACTGTAAACAGAACTGCTGCGTGGAATCAACTTAGCAGTCTCAATAGCACTAGGAATATTAACCTCACCCTGAGAACGGGCAATATCTAACAATTGCTGACTCCATTGATTAATAGCAATATTCGCATCCATCCGCAACGTGCTATTTCTGGGAACCCTATCAGCCAGTCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTACTAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 6 3042875-3043925 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUB01000001.1 Nodularia sp. NIES-3585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3042875 37 100.0 34 ..................................... AGGCTCAATCAAGATATAAGGCAGCAATTACAGC 3042946 37 100.0 35 ..................................... GATAAGTGGCAAGCAATGAATATGCTGAATCAACA 3043018 37 100.0 33 ..................................... TCAAGATTGGTTGAAGGATGTAACAATTTTCAA 3043088 37 100.0 35 ..................................... AATATCAAAGACCACATCATAAACTTGTCTTCCCT 3043160 37 100.0 33 ..................................... CCTTCATCACTAACCTGAGATTTGAACCATTCC 3043230 37 100.0 35 ..................................... CTAAAAAGCGTAGTTTTCACTGCAAAATTATGAAC 3043302 37 100.0 39 ..................................... GAGTAAGACCAATGATCTATTTTGTGCATAATTTCAATA 3043378 37 100.0 39 ..................................... CAAAGAGTTGGCGAGAAACCATGTTTGTAATCACATCCA 3043454 37 100.0 34 ..................................... TGCAACTCCAATCTATGCTGTGAAGGGGTTTGCA 3043525 37 100.0 37 ..................................... AATTTATCGTAGTTAATTTGAATAATATCTTCTAAGG 3043599 37 100.0 37 ..................................... AGAATTTCAATGGTAAAGATGTAACTAGAGAATTACC 3043673 37 100.0 34 ..................................... CCGCGTAAAGCTGATAATTGATTGAAAATACTTC 3043744 37 100.0 36 ..................................... AACTCAACAGCCGAAGCAATGGATTTTATCGATTCA 3043817 37 100.0 35 ..................................... GATATACCCAATACGCAAGGTGTGAGAAATGCAGA 3043889 37 94.6 0 ........T.......................A.... | ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 99.6 36 ATTGCAATCAAAACTAATCCCTATCAGGGATTGAAAC # Left flank : TTCCTGAATAGTGGATTGATGCGATCGCTATGCCAGTTATTTTTGTTGACTACGCAGCGAAAATTGGGAACTTTATTTTTTATCCCCAGTCCTCAATTATGCAGAGTAAAGTTTTATCAATAAACTTCTTTCAAACTTGCGGCTATTCCCATGCAAGATATTCATGGTGAACAGGTGTTGATTGAGTCTAGTGTTTCTCAAAGTGAAACCATAATTTCCTCCTAATTCGGTGAAATTTATCTGCGATTTCAGCGTCAACCTATAGGTGTTTTTTTCGAGTAATAAACTTTTGCGCCTGAATCTCTTATCTGGACTACGTTTCAAGCTCTGAAATTAGAATCCAGGTTGACGCAAGTCCTCAAACCCTTACCAATTATGATCTTGCCAGGATTCCCACTTGTTCACCTCTTGACAACCCCAGTCTGAAAAGGTACATTTGGATGAGGTTGACGGAACTGAACCTTGAAAACTAAATATACCAATGCTTCTAGCCATGAGCC # Right flank : CTTAGGTGTGAATCAGTAAGAAATGCGTTTACCCAACTTCGCCACGTTTCTCAAAATCATCATCTTCCAGCTTTTCAACGTTGCGTAGGTGAGTTTAATTAAATCACGATTCAGAATTAATGAGATTTTTTTGCTGCTGATACATCTGCTTAAACAAAGCTTGCTGAACTTTATGATCCACAATTGGTGCAGGATAGCCAATACCTTGAAGTTCCAAAGGTGGAATTTTACCAGTTACTAAATATTCAGTATCTACAGACTGCAACTCTGATACCCATTGGCGAATATATTCACCTTCCCCGTCAAATTTTTGTGCTTGACTAGCAGGGTTAAAAATCCTTAATGGTTTCGGGTCCATGCCACTAGAAGCACTCCATTGCCAACCGCCATTATTAGCAGATAAATCACCATCAATGAGTTTCTGCATAAAGTATTTTTCTCCCCATTGGGGATTTATCATTAAATCTTTAGTTAAAAAACTAGCCACAATCATCCGACAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATCAAAACTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 7 3162094-3160950 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUB01000001.1 Nodularia sp. NIES-3585, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================================== ================== 3162093 23 100.0 53 ....................... GTTTATTCCGGTCGGTTCAAGGATTGCGATTTCTGGCCGCTTTCCGCTAACTT 3162017 23 100.0 53 ....................... CTTGATCCTTTTTATATTGATGCATCTGAAGCGGCCCCACTTTCCGCTAACTT 3161941 23 100.0 48 ....................... AGAAATGCGACTTGCCAAAAGATTATTATTTCAACTTTCCGCTAACTT 3161870 23 100.0 49 ....................... CCCCTGGTTTATGTGCAGAATTAGGTATTAGCTCTCTTTCCGCTAACTT 3161798 23 100.0 51 ....................... TTTGTTATGACTTCCATAGGGTTATTTTTTATGTTGCCTTTCCGCTAACTT 3161724 23 100.0 52 ....................... ATTTTAACCATATTTACATATATAACATAAACAACATACTTTCCGCTAACTT 3161649 23 100.0 53 ....................... AAAACATCAATCCACCACTACAGAAACGTGTACGCCGCACTTTCCGCTAACTT 3161573 23 100.0 54 ....................... TCATGTCAGACTGATCCACATGATGATTTTCTACGGCTTTCTTTCCGCTAACTT 3161496 23 100.0 51 ....................... ACTTAGGTAATTCATTTGCACTTGCTTGCCTAAACATCTTTCCGCTAACTT 3161422 23 100.0 52 ....................... AATAAATAGGCTTCGTTGCTGGCGAATTGGGGTTTTTCCTTTCCGCTAACTT 3161347 23 100.0 59 ....................... ACGGCTGAACCATATGGCATCCTACGGGTTGAGCCGTTAGCTGTGCTTTCCGCTAACTT 3161265 23 100.0 51 ....................... ACGGCTGAACCGTTCATCCGTGAGAATTTCTGCTAGTCTTTCCGCTAACTT 3161191 23 100.0 49 ....................... CTTGAATGACGGCAAGTTTTGCAAGAACAGATGCGCTTTCCGCTAACTT 3161119 23 100.0 49 ....................... TCGGCGCGTCACGCCCTAGGTAATAGTCCAAAAATCTTTCCGCTAACTT 3161047 23 100.0 52 ....................... ACAAGATACTCGCCCAGGAATTTATACCCCTGTTTTAACTTTCCGCTAACTA 3160972 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= =========================================================== ================== 16 23 100.0 52 AATCCCCGCAAGGGGACTGAAAC # Left flank : ATGCGGAGATTCTTGGTTCATAGTTCAACATACTTGGGGTGCAGATTGGATTCCCATAAAATTGCTTCGAGAGAGGCGATCGCTCTGATAAAATAGCGGCAATTTGGGCTAAAATCCTAGCACGGCTAGAAATGGAAGAATCTCTCAAGGCGATCGCCGATGATTTAGAAATGCCCGTTGCTACAGTTAACACTTACACAAAATTGGCTAGGCGATCGCTAAACCAGTCAAGTCCCAAGTAATATATCTCGACAAGAACAAACAATCAGCTTATGATGATGTCATCAGCTTAAATTTTGGCAGACCTATAGTGAGGTCAAAAACCCTGGGGGGTTTGCCAAATCGCCAGAACCTTGACAAATCAATAATTACAGCGTTTCATAAGTTTCAGTTGCGAGTTTCGCGAAGCCTGAAATAGGGTTTTTAGATCAGGTTTGCCAAAATCGCCTCCAGAATCCACTCGTAGACTATGTTTCAGATGGCGGACTTTCCGCTAACTT # Right flank : TCTATAACTAGAAAAAGCCGTTACTGGCAACAAGGCCGCTAAGAGGATGTTTGAAAAGTTTATGGCTAACGCCACGCTACGCTATGGGCGAATATAATAGAGCATCTGATGCCGCAGCCTGTACGCTACTACACAAGCATGACGCGCAGCGGCTGACCGTAGGGAAGTCCGCGGAGGCGGACTAACGCAAAATTAAGGTTTTTAACCCAGGTAGCTGGGTTTTGTTTGTGTGGTTCCGCGACTTACAGTCGCCAAGGCAGTAATTGTTTTTGCTCACGTCGGTACTAGTTCACCAGGACGCAATTTCGACCACTTACCCATTTCCCGCTTAAAGCTGAGACAACCGACCACATCCCATTCCATTTCAATCACATCTTCGCTGGTGCGGATGTTGACATTAATAGAGGGTTCATTCGGGTCAAAAGTGGGATTTTCGGTTAAGTGGGGCTGTTGGTGCTGTGCTTCTACGGCGTGGTAGGTTTCACAACTGTCTACGTAGT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 4733623-4733144 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUB01000001.1 Nodularia sp. NIES-3585, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 4733622 36 100.0 36 .................................... GGAAGATTTACGGTCACGTTCAAGGCTAACCACGGG 4733550 36 100.0 38 .................................... TCCCCCGTCACGGCAGCAGAGATGTGGTCAAGGACAAG 4733476 36 100.0 37 .................................... AAGACTGTATCGCTTACCTCTGGGTAGAAGGACACCT 4733403 36 100.0 37 .................................... AAGACAGCAATGATGGTTATTGAAGAGGGAGAGTATT 4733330 36 100.0 42 .................................... AACTTGAGCGCTTGTTGTCGCGCTGTCATCTCAAGAGGTATG 4733252 36 97.2 36 .............C...................... CGTGTGAAGTTTGCGGCTTGTACTGCCTCTACCACT 4733180 36 88.9 0 .............C................AC...A | C [4733147] ========== ====== ====== ====== ==================================== ========================================== ================== 7 36 98.0 38 TTACCTATAACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : AAAACGGCGGGAGCCATGACAGCTTAACCCCTAACTATACAAATCTCAACATATTCTATTTCTATTGTAGTTGAGTAGTGTGAGAGCAAGCGATCGCTTGGCTACCTTCCGTCACTTTATCCTTAATTTTCGGTTTCCCTCCTTGGTACGCTACGACGTACACACAATTTATCCCACAGCTAGGAATCACAGCAGACAAAGCACGGTTAAATCAAGATTGGGCGGTAGCGGGGCAAATTGTAACGGATTGTAAAGCCAGCTTTTATTTTGTCGCTGCAAGCTAGAGCAAGCTGTGGCGGGTAATAGTTTGTACATAAAAGTAAATTTCATTTTTACCCTTGACTTCTTGCGGTTTTATCTCTATTCTCTTATTTAAAAGAAAATTTAAATAATTCCCCCGCCAAAATTAGCACGGAAAATAAAAGTTATATCTCCAATTTCGGTACCCCGGCGCAACCGCACCTTGAAAACTAAATACAGCAATAGTTTCCAACCTATAG # Right flank : GAACATAGATTAAAATCCCCCTTTTTCTACGCCGAAGGCGCATCCCCGAAGGGGTTTAGGAGGATTTAGGGGGATCTAGAAATGTTTACTACCAACAAAAACTCAATTATTCCCCATATTGTTCACCAGTCACCTTACCTCTAAACACAATGTACTGATAAAGGTTGTAAAACAACATCACCGGAATCAGAAAGCCGATAAAAATAATCATGATTACCAGCGAACTCGGATCAGCAGCAGCCTCATAAATGGTGATTTGACTAGGAATAATATAAGGAAAAACAATTAATCCTAAACCTAGAAAAGTCAACACAAATAAAAGAATCGTCCACACAAACGGCGCTCTTTCTTCTCCACGGTTGAGACTTTTGAGGAGTTGCCAAATTAGCAAAACTCCTAATATAGGAATGACAGCAAAGATATAAACTAGGGGTTGTTGAAATAAGCGGGATCTAGCACCCTCATAAATAATTGGTGTGGTAACGGTGATGAAAATAGCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTACCTATAACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 9 4936883-4937794 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUB01000001.1 Nodularia sp. NIES-3585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4936883 37 100.0 38 ..................................... GTTAGCGTACAGGGAACAAGCGACCCCACTTGTTGATG 4936958 37 100.0 35 ..................................... ACTTGTCTCCTCCTTGCCAGGAATACTCTGTGGCC 4937030 37 100.0 35 ..................................... ATCGTTTTAAAAACACTCCATTATTTGAACCGGGG 4937102 37 100.0 37 ..................................... ATATTGAAGGTGATGCCGTAGATGTATTTTTTCTTGG 4937176 37 100.0 33 ..................................... ACTTAACTTACCTCTTCTAGGGGTTTGCATTTT 4937246 37 100.0 35 ..................................... GTGTAGAAGGTACAACTTACCTGACAGACTTTAAT 4937318 37 100.0 38 ..................................... ACTTCTCTCAGGGGTGCTTGGTGCAGAGAATTATGCAG 4937393 37 100.0 42 ..................................... GAATCAGCGCCAAATTCTCTTTTAATATCCTTGGCTAGTGCC 4937472 37 100.0 33 ..................................... GAATCAGCCACGATTCGGGCTGACTTATTATAT 4937542 37 100.0 35 ..................................... GATACGTTCGTCGCCGCAAGCGCTAAAAAATTTCG 4937614 37 100.0 34 ..................................... AAGCCAACCATATATGCTGCATTCCTAAGAAATG 4937685 37 97.3 36 ..............T...................... TTAGATTTTAAATTGCCAATTTGCAAATTAATACTT 4937758 37 91.9 0 .........A....T..................T... | ========== ====== ====== ====== ===================================== ========================================== ================== 13 37 99.2 36 GTTAAAATCGCCAAAAATCCCTATTAGGGATTGAAAC # Left flank : TTTAGTGAGGTGTCAGGTAACAAGAGTCTACTTTGCCCAAATGAGCGATCGCACTATTGAGTCTTACGTTGCTACAGGCGAACCCCTCAAGTGTGCTGGTGCTTTCGCCCTTGAGGGTTTTGGCAGTTTATTTGTGGAAAAAATTGAAGGTTGTCACAGCAATGTCATTGGACTGAGTTTACCCCTGCTGCGGCAGATGCTAGAAGATTTGGAATATGATGTTACTGATTTCTGGCAATAGTTAATTTTGCGTCAACCAGTAGGTGTTTGAGAAACAAGGTGAATTTTAACGTCGCAAATGCTTACCCTGTCTGCCTTTGAACCCTACAATTCTGATATTGAGGTTGACGCAAGTGCATGAAACTATTGCCATGGTTGCTTTTGAGGAGATTTGCTCAAGTGTTAGTATTGACCATTGGTGCCTGAAAGGTTATTCTTGTTTTAGATCGACGCAACCGCACCTTGAAAACCGAATATTTAAAGGCTTTCAGCCCTGGGCA # Right flank : CGAAGCACTCCTGCACTAGAAGTCGCGGCTACACAGGCGAAACCCATCTACGTGGGTTGAAAACCTTTATTTTCTGTTAATCCGCGCAGGCGGACTGTTCAAGCAGGCAAAATTAGGTAATTTTGCCGAACATATACCGTAAAATCTTAAAGGTTTTAGCACAATACAACTTAATATTATGACTAATGAACACCCCAAAAAACTTGCATTTTCCTGGTTGCCTTTGAGCATATTCCTACTCAGCAGCATCACTTTTAAACCTCTACAAGCCCAAGCTGAACAACTACCAAACGACAAATTCATCTTCTCCCAAAGACTTCCGCCGCCGCAAGATATTCAACCACCTTCGCCCTCACCAATACCCTCACCAGAACCGCCACAGCTACTACCCCCACCAGCAGAGATACTTCCACCCTCGCCTCCAACTTCCACACCAGAAGAAGCACTCCCTAGCGAGGCTGATCAAACTATTACTGTAGAGAGGTTTGAAGTTATTGGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCGCCAAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 10 5046137-5047712 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUB01000001.1 Nodularia sp. NIES-3585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================= ================== 5046137 23 100.0 55 ....................... AGCCAATCCCTAGCCGCTTGGTTAATGTTAATCATGGCAATCTTTCCGCTCAACT 5046215 23 100.0 52 ....................... CAGCAACTCTATTCCTGCAACTGTTATAGAGATGGTTGCTTTCCGCTCAACT 5046290 23 100.0 53 ....................... AAACATGTATTACTGTCTTTACATAGTTTAGGGTGTGGACTTTCCGCTCAACT 5046366 23 100.0 49 ....................... TCAATTGGGGGCAGGATTTGGATTTAGGATTTTTTCTTTCCGCTCAACT 5046438 23 100.0 52 ....................... AATACAAGCGGCCTGTCAATGGGAAAAATATTCTCTAGCTTTCCGCTCAACT 5046513 23 100.0 50 ....................... ATGTCTTCTAGCTTCTTTACTTGCTAAGAAAGGTACCTTTCCGCTCAACT 5046586 23 100.0 49 ....................... GGTTTAAACCAAGTGGACCTTTTGTTACTTCATCACTTTCCGCTCAACT 5046658 23 100.0 50 ....................... TGAGATGGTTTCTGATTTATTTAATGTTTGTAACCACTTTCCGCTCAACT 5046731 23 100.0 52 ....................... ACTAGATAAAGCACATATAGCATTATGCAATGTTTCTTCTTTCCGCTCAACT 5046806 23 100.0 50 ....................... TTGAATATGATACTCAAGGTCCTATTGCTTTACAGGCTTTCCGCTCAACT 5046879 23 100.0 50 ....................... GAATGGCTTGCCAAGAAGCGCATTAATGTAATGATTCTTTCCGCTCAACT 5046952 23 100.0 52 ....................... TCTTTGTCTAGCGCCGCTTCTCCTAATGATTGGGTCGGCTTTCCGCTCAACT 5047027 23 100.0 53 ....................... TTCTTTGCCTCTGAATTTTAGCGAGCTTATGTCTGCATACTTTCCGCTCAACT 5047103 23 100.0 50 ....................... CTGATTAATGCCAAAAAGCCCAGTTTGAAGTTTGTCCTTTCCGCTCAACT 5047176 23 100.0 55 ....................... CATTTTTGCTGCGTGATAGCGGCGTGGTTCTACCCCTTCGACTTTCCGCTCAACT 5047254 23 100.0 51 ....................... AATCAAAGAACCCTAAAAGGATAAACGGCACACTAAACTTTCCGCTCAACT 5047328 23 100.0 49 ....................... TTGATGATACTGAGCAAGGGATATTGTTAGCTGAACTTTCCGCTCAACT 5047400 23 100.0 51 ....................... TTCAACAAACTTTCAGCATTACTCGCACAGGTGGAGGCTTTCCGCTCAACT 5047474 23 100.0 51 ....................... GCTTCTTTAATCACTTGAGGTGAATCCCCAAGCTTTTCTTTCCGCTCAACT 5047548 23 100.0 46 ....................... ATTGGTGGAATTGCTTTAGAGCCTGCCGTTGACTTTCCGCTCAACA 5047617 23 100.0 50 ....................... GTATCAATGTAGATGTAAGGAGAAGTCATTTTTGAGCTTTCCGCTCAACT 5047690 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ======================================================= ================== 22 23 100.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : CTGTTTATTTACGACTTACCCGATAATAAAGCAGCAAATAAGCGGCGGACTCGCTTGCACAAAATGTTGACTGGTTATGGGAAATGGACTCAATACAGTGTTTTTGAGTGTTTCTTAACTGCTGTCCAGTTTACCCAATTGCAAATAAAGATTGAGAAATTGATCAAACCTGATGAAGACTCGATTAGAGTATATGTGCTGGATGCTGGCAGTGTTAAAAGAACTATCACTTATGGTTCTGAAGTACCTAGACAAGAGCAGACAATCATTATATGATTGACTCATAACCAAGATTTTTGGCAAACCTATAGTGAGGTCAAAAACCCAGGGGGGTTTGCCAAATCGCCAGAACCTTGACAAATCAATAGTTACAGCGTTTCATAAGTTTCAGTTGGCAATTTCCCGAAGCCTGAAACAGGGTTTCTAGATCACCTTTGCCAAAATCGCCTCCAGAATCGCCTTGTAGACTATGTTTCAGATGGCGGACTTTCCGCTCAACT # Right flank : CACTTTAGCCAGCGCTATCAATATTTTGATTACTCCACAATATTTTTCAACCTGAAATAGAATCATCTTATTGGTGAGCAAGCGAAGGTAGCAGTTAGAGGAGTTATTTAATGGAAAAACGGCAAACATTTCGGGCTGCCATACTTGCCTCTTATGGTGCTACGGAATCAGAGATAGAAGAACTGCTAGTTTACAATCAAAATGTTTTTGAGCATGACAGTTTACAACCATCTCTGAAATTTCCCCTGGAACCGGAATCGCATATTATTACTTGGCAAGAGTATGCTGTTAGTGCTAGAGAAATGGGTGTATTTGAAACCCTCAAAAAGGTCTTGGTTCAGTTATTGTTTCCCATCCAAGCAGGAATTAGCCAGACTGAAGCCTACTCTGCTGTTACTTTAAAAGGAGTTAATCCTGAGAGCATCCCTGAGGCAACTGGTTTAGTTCTTGAGCATCCAGACAAACTGCATTTACAAATTTATCAAAGTTTAGCTGGTGCA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 5225160-5225847 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUB01000001.1 Nodularia sp. NIES-3585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================== ================== 5225160 23 100.0 51 ....................... TCTGCCCATCTAGCCATTGTTGCTGTGGCTTGCATATTTTTCCGCTAAATA 5225234 23 91.3 49 ....T...A.............. AGAAGAGGATAATTAACTTCACTTGTATGTTTTTCCTTTCCGCTAACTA 5225306 23 91.3 52 .T....G................ TTGTTAATGTCTTTATGACCAAGATGATATTGGATTTCCTTTCCACTAAATA 5225381 23 100.0 51 ....................... GTTTCCATCTTGAATGTCCGTTTGCAGAAAAAATCTGCTTTCCGCTAACTA 5225455 23 95.7 50 ........A.............. GGTTTTTGCTTGGTGAAATTGTCAGGTACAGATACACTTTCCGCTAAATA 5225528 23 100.0 50 ....................... TGTCCTTAATTTCTGCTCTAATCTGTTCGTCCCAGCCTTTCCGCTAACTA 5225601 23 100.0 49 ....................... AGCAGCATCAATACTGCCTTGCTCTAGCGCCTCTACTTTCCGCTAAATA 5225673 23 100.0 53 ....................... AAACTGAGAATAGGGTCAACTCGTAGTGATGCAAGTTCGCTTTCCGCTAAGTA 5225749 23 100.0 53 ....................... AAACTGAGAATAGGGTCAACTCGTAGTGATGCAAGTTCGCTTTCCGCTAAGTA 5225825 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ===================================================== ================== 10 23 97.8 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : ATTCCTTTCATTTGGTTTTGCAAAAGTGAGATTAATTGCTTGAATTTAATCAATTGCTGGCAGAAGAGGTGCTTGCCGTATGTAAGCACTTTCTCTTATGCTTATGTGATGCGATGCGATCGCGAAGTGCTGCTGCAAGCAGATCGAATTAGATTAAGATGATTAATCGTGGTTAGTTTGACGCACTAGCAGCATCTGAGTTTGAGGTTGTGGATTACACACACAATTTTAAATAATATAAAGGCTCGACAATTTTAGACAATAGTTTTATGATAGGTCTAACAGCTTGATGTTTGGCAGACCTATAGTGAGGTCAAAAACCCTGGGAGGTTCGCCAAATCGCCAGAACCTTGATAATTAAATAGTTATAGCGTTTCACCAGTTTCAGTTGGCAATTTTCTAAAGCTTGTAATGGGCTTTCTAGATCAGGTTTGCCAAAACTGCCTCTATAATCGCCTTGTAGACTATGTTTCAGATGGCGAATTGCTTTCCGCTAAATA # Right flank : CATTTTAGATACGAATACTTTTGTGGTAATTAAAATGATCTAACCGCCAAGCCGCCCGCGCGCAGCGATGCCCGCAAGGGCTGTAGAACGCCAAAAGAAGAAAGAAGTTCATAGGGGCGGGGTTATTTTATTACCAGTATCAACAAATTGCCAAAAAACTGGTAAATTACCCTATCACCTTAAAAATTTAGTGCCAAGCATTATGAAACGTCGAAAAATTCTTAACACAGGTGCGATCGCCACTGCAACTGCTGTAACATTAGGCTCATGTGCGCGTACCCAAACCGCCGCTAATGTGCAAACTGGACTACCGAATATTCGGTGGCGAATGGCAACCAGCTGGCCTAAATCTCTAGGGATTTTTAGCGGTGCAGATATAGTTGCCAAGCGCGTGAGAGAAATGACCAACGGACGTTTTAACATTACACCCTTTGCGGCGGGGGAAGTAGTTCCGGGGTTACAAGTCATGGATGCTGTGCAAGCGGGAACAGTGCAATGCG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : CTTTCCGCTAAGTAAATCCCCGCAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 12 5383302-5382177 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUB01000001.1 Nodularia sp. NIES-3585, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================= ================== 5383301 23 100.0 51 ....................... ACAAAATTAATAGTTTGCAAAAAGCAGGATGGATGATCTTTCCGCTAACTA 5383227 23 100.0 51 ....................... TTATCTATCTCTTCTTGAGATAATACCTTTATTTTGACTTTCCGCTAACTA 5383153 23 100.0 49 ....................... CCGTTTCTGCGAATTCTACCGCAGGCGCGAACTGACTTTCCGCTAACTA 5383081 23 100.0 53 ....................... AGGAGCCTACAGGCAGTCCACTATCCGAGATAGCGACAACTTTCCGCTAACTA 5383005 23 100.0 49 ....................... TTTCACTGTGCCACTCTCCTAAATTTTCCTATTAACTTTCCGCTAACTA 5382933 23 100.0 50 ....................... GCGAGGTTGATGATCGCCTTTTCGTTAGCATCCACACTTTCCGCTAACTA 5382860 23 100.0 50 ....................... AGACAGATGGTTTTGGTTTTATCTAGGTGAAGAGTCCTTTCCGCTAACTA 5382787 23 100.0 50 ....................... TTTAATCAGAATGAAGATAACTAGTATAAGCGTGTCCTTTCCGCTAACTA 5382714 23 100.0 55 ....................... GCTGTAATTATTAATTTAATCCACTTAACTTTAGAGTTAAACTTTCCGCTAACTA 5382636 23 100.0 48 ....................... AAATGCAAAGAATTTTAGAGTTGCAAAATGCTGCCTTTCCGCTAACTA 5382565 23 100.0 55 ....................... AATTACTTGTTTAATTTTTTCGCTCAAGCTTCACCTCCAGGCTTTCCGCTAACTA 5382487 23 100.0 49 ....................... ATCAGTTTTTATTTCAGCTTTTTTTCATTATTTGGCTTTCCGCTAACTA 5382415 23 100.0 48 ....................... ATTTCTTAGACCATCTCTCAGACGGCAATCCTAACTTTCCGCTAACTA 5382344 23 100.0 49 ....................... GACAAGAAGTTGAGTTTGACTGGCAGGACGTTATACTTTCCGCTAACTA 5382272 23 100.0 50 ....................... ATGAATTCAGATTTTGGCTGAGATTTAATTGGGCTTCTTTGCGCTAACTA 5382199 23 69.6 0 ..........GATTA...T..C. | ========== ====== ====== ====== ======================= ======================================================= ================== 16 23 98.1 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : TAAAATTGTTCCCAGTCGTACAGTTTATATACTTAAAATACTGAGCTTTGGGCTAGACTGATGCCATTGTCTGAGGTTTAAACAATGGCAAGTCAAACAGTGGCGCAATTACTGTCACTTGATTTTATTAGTGGCTGTTTTGAGCCGATAATAATTAACCAGAAAGGGGAAATTGTCTTGCGTCAGAATAATCGAGTTATCAAATAGCACCCTCTGATAAATATATGCGTTAAAATTGGTGAAAAATTATTGACAAAAACAGTATTGATCGTATTATTAATGTATTAGCTTGATTTTTGGCAGACCTATAGTGAGGTCAAAAACCCTGGGGGGTTTGCCAAATCGCCAGAACCTTGACAAATCAATAGTTACAGCGTTTCATGAGTTTCAATTGCGAATTTCGCGAAGTCTGAAATAGGGTTTCTAGATCACCTTTGCCAAAATCGCCTCCAGAATCCACTCGTAGACTATGTTTCAGATGGCGGTCTTTCCGCTAACTA # Right flank : TGCGGCTAATTTTCCCCAACTGAGATAAGGCAGTTTAGCAGCAGTTGCTCGAACTTGGTCAGCATTAGCCACTAACTGACCGCAAGCATCCCATGTACCAGCAATAAAAGTGCTGCGAGTACCTTCGTTCATGGTAACTTTGGCAGTGTAATCACCAATTTGCACTTCTAAAGTTTCTAAATTCACTGTCACAGCTGCTTCGGCATTAGTAGCTACGAGTTCTTGCAGTTTTTTGACTGTGGCTGCATCGGCTGTCAAGCAAGGTATGCCCATTGCTACACAGTTACCAAAAAAGATTTCGGCGAAACTTTCACCGATTAAAGCTTGAATTCCCCATTTAGCGATCGCCTGGGGTGCGTGTTCTCGTGATGAACCACAGCCAAAGTTACGGTTAACGATTAAAACATTAGCCCCTTGATATTGAGGTTGATCAAAGGGATGTTCACCTTTTAAGGATGTGCGATCATCGATAAATACGCCTTCACCTAATCCATCAAAGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //