Array 1 113636-116634 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHTG01000013.1 Bifidobacterium longum subsp. longum strain MCC10117 contig0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 113636 35 100.0 37 ................................... ATCCCATTCTCCATAGTTATGGCAGTTACTAAAAATA 113708 35 100.0 38 ................................... AGATAACATGCAGTTGACCGCTCAGGAATACGATGGGC 113781 35 100.0 37 ................................... ATCGACTTTAGGTGGCTGTTGCCATTTGGGGTCTTCG 113853 35 100.0 37 ................................... ATGAGGTAGTTCGCCCATAGTTCGGTGCCGATGAACG 113925 35 100.0 39 ................................... ATGCGGTGCCGCGGCTACGTGCCGCGTTTGCGTTGCCGG 113999 35 100.0 36 ................................... AGCGAGCTGGTGCAAACGGCATGACCTGCCGCATGT 114070 35 100.0 36 ................................... AGTGAGGTTATGCGGCAAGGTCGATGCGCTGTTTGA 114141 35 100.0 37 ................................... AGCGATGGGAGGCAACCCGGAGGCGGAAGCCCAATTC 114213 35 100.0 37 ................................... ACCGCAAGGTTCGCCACGCGATCGCAAAAGCTCTTAA 114285 35 100.0 38 ................................... AATACATCAACAGCGTGGATATCCCGCGTATCATGGTC 114358 35 100.0 35 ................................... ACCGTCGAAAAGACAGTAGTTCAGGGCGGTGTACG 114428 35 100.0 36 ................................... AGCAACGAGGCCACACCCACCGCACAGGCCGGCGAC 114499 35 100.0 38 ................................... ATTCGACTTTCGGTAAAGCAATGGCGCAGGTCATGAAA 114572 35 100.0 37 ................................... AGTCATGACATGCCCCGGATACTACAAGCTCGAAAGC 114644 35 100.0 36 ................................... ATTCGGCGGTTTGAAGAACGCCGCGAGCGGGCTTAT 114715 35 100.0 37 ................................... ATACGTGGGCGACGTTGTAACCTGCCGCTAACCCAAA 114787 35 100.0 37 ................................... ATCCGGCACGGGCGTGGTCAACACGTGGAGTCCAATC 114859 35 100.0 41 ................................... AGACCTGCTCAAGCGCGGCCTCATCCACCAGATGAGCATCG 114935 35 100.0 37 ................................... AGGCGATGCAATCGCAGTTCGGATGCCTCTCGAAGGG 115007 35 100.0 36 ................................... AGTGGTGGCCATGCCTTGGATGAACCGCAGGGCCTG 115078 35 100.0 38 ................................... ACAGTGGACGACCACGCGGGCCGCCAAATCGCCCTTAC 115151 35 100.0 37 ................................... AGCTCAGCTGGAGACACTGCCGGTACCCGACACGGTC 115223 35 100.0 36 ................................... ACACGTCAAGGACATCATCCAGGACACCAAGTGGTT 115294 35 100.0 38 ................................... AGTGGCGTCCGCTAACGGTAAGTGTGTTGTCGCCTATC 115367 35 100.0 39 ................................... ACAGCACGGCGAGCTCATCGGCCGCATCACCAGCGCCGA 115441 35 100.0 38 ................................... AGGTTTGTGGATTGCCCAGTACGCCAACATGTCGCCGA 115514 35 100.0 37 ................................... GGGCGAGGCCATGCGCCAGTACAGCGGTACCGGCGTG 115586 35 100.0 39 ................................... GCGCTAAGGATATTGCAGACATGGTGGATCGCGTTGACG 115660 35 100.0 37 ................................... GGCATTGAGCGCCGCGAACGTGTCGTGGCTGCCGGCT 115732 35 100.0 37 ................................... GTACCGAGTTACAGAGATTAGGGCCACGGCCTGCAAG 115804 35 100.0 38 ................................... GCGGGCGCGATAGGCGACAACACATTTGCCGTTAGCGG 115877 35 100.0 36 ................................... GGAGGACGGCACGGCGTTGTTCCTGCGCTGCTCGGC 115948 35 100.0 40 ................................... GACGGGCCCAGTGTTGGCGAGCATGGGTTTGGCGGATGGT 116023 35 100.0 37 ................................... GACGCAAGCGGCAGTGTCGTTAACGCCGTAAGGCGTG 116095 35 100.0 37 ................................... GACGCGTTACGTCGAGGTGCCGGACTCCAAGACCGAG 116167 35 100.0 37 ................................... GATGTCCACCATCACAGTGAAGTTCGTCATCTGGGCG 116239 35 100.0 37 ................................... GGACAAGGTGCTGCTGGTGAAAAACGGCCGCCTCATC 116311 35 100.0 38 ................................... GGAGCCGCATCTCTATATCCGTATCAAACCGCTCCCGG 116384 35 97.1 38 .....................A............. GGTGGTAGTTGCGTACCGGTGGCGCAGACTATGCGGTG 116457 35 100.0 37 ................................... ATTGGCACCGTGAGGCCATTACGGCAAGAGAGGCGCG 116529 35 100.0 36 ................................... ACTCGCCCAGACCGGCAAGGACGCCGGCGACCACTT 116600 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 42 35 99.9 37 CTTGCATACGTCAAAACGTATGCACTTCATTGAGG # Left flank : AAAGCCATACGGCTTATTTAAGGAATGTGATTTATTTTTTCGCGATATGCGATAGATGTTTGATAACTAAATAGTGGTACTAAGATAAGGGGGGGGGCGGATGTTTTTTTGGACGGTCAGGCGGACAGTCCAAGGTGTTTGCGGTGTTGCATGGGGCTTATCCAGTCCAGTGACTTCTTGATTCTAGTCTCATTGTAGTGGGTCAGGTAGGTGTATTGCTTCAATGTTTGTTGGGTGGGTTCGGCAGTGTTTTTCCGCCCCTTACGCATACGAAATCAACGGCTCGACGACGAACTGACATCCACGAAAACAGCAATAGCGCCTATTGTTTTTTGCGAGATCTGAATCGCTCCTGAATGAGCTACTAGGCATTCGCAATGAGAATATAGCGGTTCTGTGGATCTGAGAATCGAGATTGCCATGTTAGAGGACGTAGCTGTCCTCCACCTCTCGCAGTTTTGTCGGGAAAACCTCCAGTGATACCATAAATTCGAGCCTGC # Right flank : GGAGTGTGAGGCATGAAAGAAAACTCTTACACTCTGGCCTTGCATATGATGTGACCTGGTTTTTTGTTCCGCATCTCCTATCGAGTGAGAGGAAATGCGGAACAAAAACCAGGTCACATCAATATCGATACACTTCCGTGTGAAGCTCGTCATAGTGGATTGCACGAAAAAACAGATAGGGGGCTTTCCGCCATCAACAGCGGAAAGCCCCCTATTCTTACGGTCTACCTGCAATCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTTTCCCACGGGAACTCAACGTCGGTACGTCCGAAATGGCCGTAAGCGGCGGTCTTCAAGTAGATCGGGCGCTTCAGGTCGAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGATACCGGGTCGGCAACGCCAATAGCGTAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCATACGTCAAAACGTATGCACTTCATTGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //