Array 1 194862-196414 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYG01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S112 NODE_1_length_374092_cov_86.910683, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194862 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 194923 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 194984 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 195045 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 195106 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 195167 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 195228 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 195289 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 195350 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 195411 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 195472 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 195533 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 195594 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 195655 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 195716 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 195777 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 195838 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 195899 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 195960 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 196021 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 196082 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 196143 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 196204 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 196265 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 196326 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 196387 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 212547-213186 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYG01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S112 NODE_1_length_374092_cov_86.910683, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212547 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 212608 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 212669 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 212730 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 212791 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 212852 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 212913 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 212974 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 213035 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 213096 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 213157 29 96.6 0 A............................ | A [213183] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //