Array 1 497-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHNH01000010.1 Salmonella enterica subsp. enterica strain 251_15 NODE_10_length_208140_cov_55.2649_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 496 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 435 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 374 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 313 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 252 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 191 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 130 29 100.0 31 ............................. AAAAACAGAAGAACGGCAAGCGGCACCTCAA 70 29 100.0 0 ............................. | G [56] ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GCGGTCAGCGCGGTATTGAGGCCGGGGACCGCCCGTGTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 129-827 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHNH01000038.1 Salmonella enterica subsp. enterica strain 251_15 NODE_38_length_17411_cov_48.5447_ID_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 190 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 251 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 312 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 373 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 434 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 495 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 556 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 617 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 678 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 739 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 800 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTTCGGTACCGTCATGTTGAAAGACTCGATCATTTTCATGTCGAAGCCGCGGAAGAAGCCGCTCAACACAAACAGCAAAACGATGGCGACCATCATCAAAAACAGAAGAACGGCAAGCGGCACCTCAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17086-17297 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHNH01000038.1 Salmonella enterica subsp. enterica strain 251_15 NODE_38_length_17411_cov_48.5447_ID_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17086 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 17147 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 17208 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 17269 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : CCTTTAATCGCCTCTCCTGTTTGGCTGGTAAACGGACAGCATAATATATTGATGAGTCCAAATGATATTATTGGTCATATAAAAAGTTTACGTTAGGTTATTTTTCTATTGCAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-1158 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHNH01000023.1 Salmonella enterica subsp. enterica strain 251_15 NODE_23_length_64337_cov_55.0423_ID_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 111 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 172 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 233 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 294 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 355 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 416 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 477 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 538 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 599 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 702 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 763 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 824 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 885 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 946 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1007 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1068 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1129 29 96.6 0 A............................ | A [1155] ========== ====== ====== ====== ============================= ========================================================================== ================== 18 29 99.2 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGCCGCTGACGCACTGGATCAACCTGACGCAACGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //