Array 1 15925-22913 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPJ01000024.1 Methanosarcina mazei strain 3.F.T.1A.2 scaffold75_1_size29277-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 15925 37 100.0 36 ..................................... ATAGGAAGGGTAAGCACAGTTTAAGCCTCCTTCCAG 15998 37 100.0 34 ..................................... TTGCTTTGTAGCTTCCGTTACTTGTTTTCATGTA 16069 37 100.0 37 ..................................... ACTCTAGGGTCCTGCTCATAATCACTTCCAGAACATC 16143 37 100.0 36 ..................................... AGTCATCTACCCTGATTGATTGATGGGGGCTTGTTA 16216 37 100.0 36 ..................................... ATCCCTCTACTATCAATGATGCCCACGGTTGACGGA 16289 37 100.0 33 ..................................... TAGTAATTGATATGGCAGGGGTCCCAAAAGCCA 16359 37 100.0 34 ..................................... AGGGGACGTTCGACGCTTCAACGAATGCCGGCGC 16430 37 100.0 35 ..................................... AGAAGACCGAGGTGAAAATGAATTGAACTCTGAAC 16502 37 100.0 36 ..................................... TATTATTTTCAAGAGTGTTCGCCATTTCATAAACTG 16575 37 100.0 36 ..................................... ATTGTTGCAGGCTTAAACCCGTCCCGGTTAGCCTGT 16648 37 100.0 34 ..................................... ACTTCAAAAACATCGCCCGGAGCTATAAATTTAG 16719 37 100.0 36 ..................................... TGATGATCGAGAAGTAATGCTTACTATCCCTGAACA 16792 37 100.0 37 ..................................... AAATATCATATGCAGGAGCAGAGTCTTCAAAAACGGT 16866 37 100.0 37 ..................................... TCAAGCTGCACCCCAGGTCCTGCACTTTCCCGCGCCG 16940 37 100.0 35 ..................................... TTTTAAAAGTCAAATATTCCACTTTTCCAGGATCG 17012 37 100.0 36 ..................................... AGTGTAGGGGTATCGAAGAGAACATATACATCTAAG 17085 37 100.0 37 ..................................... CTTGTGGGGTTCCAATAATCAAAACCTGCCCGGAGAT 17159 37 100.0 34 ..................................... GGAAGTCCTCTTTTGGGAATTGCTTTTTGAATGC 17230 37 100.0 38 ..................................... AAATGTCTTCGACTTTTTTTAATTGGTCTGCAGATTCA 17305 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 17379 37 100.0 34 ..................................... CAAACTTTGTTAAGAGAGGGCTTACCCGTTCAAA 17450 37 100.0 35 ..................................... CGAATGGCTCTCTCTCTACCAACAAAGACCAAGTG 17522 37 100.0 35 ..................................... ACCATCCGTTACATCTCTTTGGTAATGTGAATTCT 17594 37 100.0 35 ..................................... TTTGACAATAGTACAATTTTTGAACCTGGTGTACC 17666 37 100.0 37 ..................................... ACTGTGCCAGAAATGAGAACATCGAGACAATTATGCC 17740 37 100.0 35 ..................................... TGTCAATAATTTATGCGCGGAGAAAAAACGGGGTG 17812 37 100.0 35 ..................................... TTCACTTTCCTTTTTCTTTACATAAATTTCAAACT 17884 37 100.0 37 ..................................... TGTTTTCAACATAATGAAAAACTTGGAGCCATCTGTA 17958 37 100.0 34 ..................................... TGAATACGAATTATGAAAGATTAAATCCAGATGG 18029 37 100.0 37 ..................................... TAAATGTCTGTAAAACCATATAGTATAATGTCAGTGG 18103 37 100.0 35 ..................................... TCACATATTCGAGTTTTGTAAGTTCACTAATTACA 18175 37 100.0 35 ..................................... AGGGTTTTAGAGGTCATTTTCACACCCCGAAGAAA 18247 37 100.0 34 ..................................... ACCGTGTCAATCGCTTACGGTTTTAAACAGCAAA 18318 37 100.0 36 ..................................... CCATGTGTGCAGCTCCGGGGTCTATATTCTATTCAC 18391 37 100.0 34 ..................................... TCTTGAGCGAGGGCGTTTCCAACGTCCACCTGTT 18462 37 100.0 36 ..................................... CAGGAGATGCTACAGCAGAAATTAAACTCGATGATT 18535 37 100.0 36 ..................................... TAGGTAATCCCGGCATGAAGCCCACACTCTGAAATA 18608 37 100.0 34 ..................................... CTGACCATATGTTTGCTCATAATGGGAGTTCGGG 18679 37 100.0 36 ..................................... GTGGATATAGAGTCTGAAAAATAATCATGTTGCTGA 18752 37 100.0 36 ..................................... AAGTCCTCTGTTGTTCTTATATGCTCCCGCGAAAGT 18825 37 100.0 35 ..................................... TGGTTGACGTATGCGGTTCTACCAGGAACATAATA 18897 37 100.0 34 ..................................... ATTAATCCCCCCTTCTCCCTTCAGCTTGAACAGA 18968 37 100.0 35 ..................................... TTTCGGCATCTTTGATACTCATCTCAAGAAGAACA 19040 37 100.0 37 ..................................... TATACATCATCAAATAATTAACAGTGATAAAAACATT 19114 37 100.0 36 ..................................... TGTAATTGTCATGGATCAGGACATTATCACAATTAT 19187 37 100.0 36 ..................................... AGAATTCGATTCAGGACAACATGGTATAATATCGAA 19260 37 100.0 36 ..................................... TCATTAGCCTTGTCAAGCTCCCATTTAAAACGGAGG 19333 37 100.0 37 ..................................... TTCGGATGATGCAAATTTTACAGACGATACCATCGCG 19407 37 100.0 35 ..................................... TAGATTTCTAGGGATCTATCGAAGTCTTCAGTATT 19479 37 100.0 36 ..................................... AAGAGCTCATTGATTCAAGTATAAGGCTGTGGGACT 19552 37 100.0 36 ..................................... TTTTTGGTATGTCCTGGAGCTGCCAAAATAACACAG 19625 37 100.0 36 ..................................... ATACAGGTTGACTGCCCGGAGTTCAAAACGCTTGAG 19698 37 100.0 35 ..................................... AGCAAAAAGTAAAATCAGGCACTATAAGCATAAAT 19770 37 100.0 36 ..................................... TAGGATCATAAATTATTATTTTCCCCGCTGCATCTG 19843 37 100.0 35 ..................................... TAACAATTTGATTACAGGTTGTGGATGGGGAAACA 19915 37 100.0 37 ..................................... TTGGGTTGGCGGGATCATCTCAAGCGGGTACAATAAT 19989 37 100.0 36 ..................................... AAATTCCTTCTGAAGAATTGAACGGGGCTTCAGTTG 20062 37 100.0 35 ..................................... TTTCCTGGTTTCAGCCATTCGGGCAATTAGATTAA 20134 37 100.0 35 ..................................... ATTCCTTATTTTCCTCTTAATTTCTCCTCTCACTT 20206 37 100.0 34 ..................................... ACATATTTTAAAGGGAAAAAAGAAGATAAGTAAA 20277 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 20351 37 100.0 37 ..................................... GAAGTCGTCTTTTCACATCGTAAAGTATTGCTAGTTC 20425 37 100.0 36 ..................................... GTCCCAGACAGGAATAATAAACCCACTCTCGCACAA 20498 37 100.0 34 ..................................... CTCTCGAAGAACCTTTTTTTTGTTTTCCCATCGG 20569 37 100.0 38 ..................................... TTCGTTATCTTCCGGCTAATTATGCCTCTCACGTCCAA 20644 37 100.0 35 ..................................... TTCCCCGCTCTATCTCATCTAGAGCTACCTGGACG 20716 37 100.0 37 ..................................... TACATGGTATTAATATGGAACCAAAAATCCCCCCACT 20790 37 100.0 35 ..................................... TCAGGAAGAGGGTTTTACTCATGCTCCTGTGATTT 20862 37 100.0 34 ..................................... GAATTCAGAAGAGGATACATTGCCATCATGGCAA 20933 37 100.0 36 ..................................... TGATGATAGAGAATACGAAATCGAGAGTTTCAAACG 21006 37 100.0 35 ..................................... TACTGATGACTTTGATGATATTGCCGACTCTACTA 21078 37 100.0 34 ..................................... TCATTAAATGCTTTTCAAGACTGGTATTATCAGG 21149 37 100.0 36 ..................................... TATATGATTAGTGTATAGTAAGAGTATTGAAAAGCG 21222 37 100.0 37 ..................................... ATACAAGCTAAAGTATCTAATTCTACCTCTACTACAC 21296 37 100.0 35 ..................................... GTTGCAGGGTGGGGAGATGGGACACAGCTTAATGA 21368 37 100.0 34 ..................................... TTCCTAGTCTTAGATCGGCATACCTGAGGGCCTT 21439 37 100.0 33 ..................................... ATCAATCGCGGAATCCCTTAAAATTCTGGCAGC 21509 37 100.0 35 ..................................... TCTGCTGGGCCGGGGTTCAAAATAATCTCATCAAG 21581 37 100.0 35 ..................................... AATATTCTGAAAGGTTGCAGGCTGAAGACAGATGT 21653 37 100.0 34 ..................................... CAACAATTGGGTTACTATTTTGTGTGTTGGTGGA 21724 37 100.0 35 ..................................... TCCTGGGGCTTCTTATGGCCTCTGTGGTCATGTTA 21796 37 100.0 35 ..................................... CTAAAATAGTAATGATAGTTTCATATGTATATATT 21868 37 100.0 36 ..................................... CATGTTTGAAGGACGCAACAGCTATGTTACGCCTGC 21941 37 100.0 37 ..................................... GTATCTACCCCTTCTCTATCCCATTTGTGTGGTGCCT 22015 37 100.0 34 ..................................... TTAACCTCAAAAACACCTAAAATCTCACAAGCTG 22086 37 100.0 37 ..................................... CTTAGGGATATGTTTAGCTCATATATAATGTATATGA 22160 37 100.0 37 ..................................... ATTTGCAATTGTATATAGTACAAAGTTATACATTGAA 22234 37 100.0 34 ..................................... TACTTTATATAGCTTTCTGCGTCTGATTCAGAGA 22305 37 100.0 31 ..................................... TGTCACAATTGTAGTGATATTAATAGCCCGT 22373 37 100.0 34 ..................................... TCATCAGAAAGCCCGCGTGAATACTTCATTTTCT 22444 37 100.0 34 ..................................... TTGCAGGTTTCACCGGTTATGTCACATGTTACAG 22515 37 100.0 35 ..................................... CGGTTCAGGACTCGGTAGAGCACTATTCCCGAAAG 22587 37 97.3 35 ..................C.................. TCTGAGGAGACCACTAAAGCCAGTCGGACCCACTG 22659 37 97.3 36 ..................C.................. AATGTATACGTCCTATATTAACAGGTATAAAAACGG 22732 37 97.3 36 ..................C.................. ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 22805 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 22877 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ====================================== ================== 97 37 99.8 35 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 24432-17613 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPJ01000080.1 Methanosarcina mazei strain 3.F.T.1A.2 scaffold34_1_size57318-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 24431 37 100.0 31 ..................................... TTGATCTTAAACTGGATTCCTTTTCTGATTA 24363 37 100.0 36 ..................................... TTATAAATATTGACATTATGGACTCCTGAAATCAAG 24290 37 100.0 37 ..................................... CAAGTTCCCCTGCTATGATAGATGAGTCTGTTCCGGG 24216 37 100.0 34 ..................................... TGCGTTTGATAATAACCTGAACGAAAATCACCGG 24145 37 100.0 34 ..................................... CCATTTTTACACCTGTTATTTTACCAGACTTTTT 24074 37 100.0 34 ..................................... CCATCAGGTCTGATCCTCTGTATGAGTTCTCTTT 24003 37 100.0 34 ..................................... GGACATACAGGCTTTGCTTTCGCTGTCGTGCCGT 23932 37 100.0 35 ..................................... AGTATCTTGTTTTCTAATTCCAACCTCTTATTTTT 23860 37 100.0 37 ..................................... CAAGGTCATATACTCTGTTTTTTAGTTCTAGAATTTC 23786 37 100.0 35 ..................................... CATGGATCTCTCTGTCTTCGTAATCTTTAAGTGGT 23714 37 100.0 33 ..................................... TTATCAAGATGTTTCCAAGAGTAATAAATCCGA 23644 37 100.0 35 ..................................... CAGTCTCGCTCATCTTTAGTTTCCTCCTATTTTAC 23572 37 100.0 37 ..................................... AAAATGTATTTTCCAGCATCAGTAACCATAGCAAGAA 23498 37 100.0 37 ..................................... CTCTCTGAAATTTCTTCGTTTTCCTCTGTCATTCCGA 23424 37 100.0 36 ..................................... GACGGGTTGCTGCTTCCAAAAGTTCGGGAAATTCAA 23351 37 100.0 34 ..................................... TTACTCTGCTTTCTCTATTCGGTTTATATGCAAG 23280 37 100.0 36 ..................................... CACATTAAAATAATGAAATCTGTATTTGCTTTCAAC 23207 37 100.0 34 ..................................... TAATATAAGTCGCCTTGACATAGAAAAATTAAGG 23136 37 100.0 36 ..................................... ATAGACCGCACAAAAGACGACGCACTAGAAAAGCTT 23063 37 100.0 36 ..................................... TGTTAAAGAGGTATGGTTAGAGAAGGGCGTGCCGGA 22990 37 100.0 35 ..................................... GCAGATGGCGAAAAATGTTATTTAGTTGATAAGAA 22918 37 100.0 33 ..................................... CGGACTTAAGGAATCTATTGTTTGGATGGATTA 22848 37 100.0 35 ..................................... CCCTTCTTACCATCGTTCAAGCCTCCTGCTTCTCT 22776 37 100.0 35 ..................................... CACTTGCTAAAAGTGTGTATCCATTCCCTAGATCC 22704 37 100.0 37 ..................................... GACGACTTGAAGAAAGAGCTTGAAGAGCTTAAAGAGG 22630 37 100.0 37 ..................................... TCGACAATATTTGAATCCAGATTTGGATTTAGTTTTT 22556 37 100.0 35 ..................................... ATTTCTCAGCCGGGTGTCCTGCTTCGACAAGTATC 22484 37 100.0 36 ..................................... ATAAGGACGCAAGACCGGACTTAGGCTGTCTTCAGG 22411 37 100.0 38 ..................................... TAATAAGTTAGGTGGTCCGTGTCAGGCATTATAAAGTG 22336 37 100.0 35 ..................................... TATTCCTGATTCGAACAGGAATCATAGCCTAACTT 22264 37 100.0 38 ..................................... TAAGTCGTTTGCGGAAGCAAAACGGGACATTGTGAGAA 22189 37 100.0 35 ..................................... GGTATTCCATATATAGTAATAGTAATAATAGTATT 22117 37 100.0 37 ..................................... CCGTAAAAGTAGCTCCACTTGTAAAACATGTAATTGC 22043 37 100.0 36 ..................................... GGTAAATTGATGCTGGAGCTGCACTTGTACTGAATA 21970 37 100.0 37 ..................................... AAATCAGGTTTTGATCTCTAACCAAAATCTTTTTATT 21896 37 100.0 36 ..................................... ATCAGTCGCACCAGCCAGCCCACAAGTCAACAAAAA 21823 37 100.0 34 ..................................... TGTGAGCGTATAAGGAAGTGGTCAAACCTACAGA 21752 37 100.0 35 ..................................... TGGCCCAGTAACTACATCATCAGCAAACATAATTT 21680 37 100.0 36 ..................................... TTCAGTTCGTCTTTGCCGGGATCTCAAAACTCAAAT 21607 37 100.0 35 ..................................... ACATGAAAGCTATACAAAGCTGATGCCAAAAATAT 21535 37 100.0 34 ..................................... AGGACGTTGCAGGCGCGACGGATAAGGCTGCTAA 21464 37 100.0 36 ..................................... TTATAATCGTAACCCTTGCGCCCGTTCATGATCCAG 21391 37 100.0 38 ..................................... TAACTGTATTCATTTTCAAGGAACCGCTTCAGTTCCGG 21316 37 100.0 34 ..................................... AGGAGGAGGATACATATCTCAGTTGCTCTATCAA 21245 37 100.0 33 ..................................... TTCCAATGAAATTGTGGTATCCCATTCCTAAGC 21175 37 100.0 36 ..................................... CGCATTTTGTATTCCTCCCATAGCGTGCAGTATTAT 21102 37 100.0 36 ..................................... CATCTAATTTAGGATCAGACCAACGTATCAAACCGC 21029 37 100.0 35 ..................................... ATAAAACAGTTGATGCATACGCTGTGCTTTGTGAA 20957 37 100.0 37 ..................................... TCAAGTCCATCAAATTCATTTGATCTGCATTCGTGTC 20883 37 100.0 34 ..................................... TGAACCGCAATTCCGGCTCTTCTAGTGACTCCGG 20812 37 100.0 35 ..................................... AAGATATTATCTCTTATCTCCTCTTGCATTTCTGT 20740 37 100.0 37 ..................................... TGAAACATACTCTCATCGGGTAGCTGCAAGAGTCCCT 20666 37 100.0 34 ..................................... TGAACCGCAATTCCGGCTCTTCTAGTGACTCCGG 20595 37 100.0 35 ..................................... TGATAGAATATGTACGCATATCCAGCCAATGCCGC 20523 37 100.0 37 ..................................... TACTCACATTAACAATATCGTCCAACCTTTCGACGGC 20449 37 100.0 38 ..................................... ATGACAACGTTAAACCCTCCCAACCAATATCAATAGAA 20374 37 100.0 32 ..................................... ACGAACTGCCAGCCGTAGAATCAGCAACTTAT 20305 37 100.0 38 ..................................... CCTTTTTATCGAGCGAAGTAACTTCAACTGAAAAAAAA 20230 37 100.0 37 ..................................... CCATGTGGTGAAGTCCGTAGCTGGCGTTTGTTGAATC 20156 37 100.0 34 ..................................... GCAGCTTCAGGAGACAGTCTGACAGTAACAGTTT 20085 37 100.0 36 ..................................... TACTCTTCATAGAAGTCTTTCAGGCTTTCAATATCG 20012 37 100.0 35 ..................................... AAAAAAAGTCAAGTAGATATAAAAGGGAAAATCAA 19940 37 100.0 35 ..................................... ATAAGGTCACGTCTATTTATGAACTTTTGAGAACA 19868 37 100.0 37 ..................................... AGAGCTTCACAAGCGCAATCTCTAGCTCCCTGAACAA 19794 37 100.0 36 ..................................... GGATGACTCTCGATTACATAGACGAAAATCCTGAAT 19721 37 100.0 35 ..................................... CTGAAACTCTTCCTGGAGATGGGACTGATACAGAC 19649 37 100.0 36 ..................................... ACTTTAGGTTGAGCCATTTGCTGAACACTAAGATCT 19576 37 100.0 37 ..................................... AGATATATCTGGCTGTCGTAAACACGTTCCGGTTTTT 19502 37 100.0 35 ..................................... TGATTCTTGGGGGCCGGCTTTCTGGCTGGTTGGAA 19430 37 97.3 36 .....C............................... TCCATCCTGTTTTCAAACTGCTCTACAATAAAAGCA 19357 37 100.0 35 ..................................... CTGCACAACTAATGTACTAATTTGTACTATGAAAT 19285 37 100.0 38 ..................................... CATTGCAGACTGATGGTTATGTCTGAGCGATAATTATA 19210 37 100.0 37 ..................................... TTTGTACATCCTGATATTTTTGACACATCTGTTCTAC 19136 37 100.0 35 ..................................... ATTATCATCAGTGTACTTTCAATGACACTGATTCT 19064 37 100.0 35 ..................................... AAGTAGTCTATGAAGATAAGGATTTAACACAATTC 18992 37 100.0 34 ..................................... ACATAACCTAACATAAGTTATATATACTATTAGG 18921 37 100.0 35 ..................................... TTAATATCTGCATCATACCAGGAATAACGGTTATA 18849 37 100.0 35 ..................................... AAATTGCATCGGCTGAGAATGTGTTAGAATACCGG 18777 37 97.3 33 ...........G......................... TAAATTAAAATTAGTAAATCCTTATACAGATGA 18707 37 100.0 35 ..................................... GATTTTCTGCTATACACATCTGTTCATAGTTGTTC 18635 37 97.3 37 .....C............................... TGTATGACTTCGTGATTGCAAACAGCCCATTGCTGAT 18561 37 97.3 35 .....A............................... ATCCTCCTGGTATGGGTAGCTGGATTTTTCTTTTT 18489 37 97.3 35 .....A............................... TATTTTCCTTTCAAATCATCAATTTCAGATTCAAA 18417 37 97.3 35 .....A............................... CCTGATACTGCTACTGGTCTCTGTTGATAGAGTGA 18345 37 97.3 36 .....A............................... AACGCAGTGGTGCAGGCTCTTATAGAGGTCGGAAGT 18272 37 97.3 37 .....A............................... AAAGCGGTTCTGGATCGTCTCAAAGTTCTGACGGGGT 18198 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 18123 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 18048 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 17977 37 91.9 0 .....A.............................GT - Deletion [17941] 17939 34 78.4 36 ---..A..AGT..C....................... CTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 17869 37 81.1 35 TG...A..AGT..C....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT T [17854] 17796 37 83.8 34 .G...A..AGT..C....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT T [17781] 17724 37 81.1 36 GG...A..AGT..C....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC T [17709] 17650 37 78.4 0 TG...A..AGT..C......................G | T [17634] ========== ====== ====== ====== ===================================== ====================================== ================== 95 37 98.6 35 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [44-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //