Array 1 3228477-3227777 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050206.1 Escherichia coli strain RH-048-MS chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3228476 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 3228415 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 3228354 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 3228293 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 3228232 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 3228171 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 3228110 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 3228049 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 3227988 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 3227927 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 3227866 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 3227805 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGGGGATAAACCGCAGATACCTTGTTTTGTAACTGCGTTAATGTC # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3256850-3256211 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050206.1 Escherichia coli strain RH-048-MS chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3256849 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 3256788 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 3256727 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 3256666 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 3256605 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 3256544 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 3256483 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 3256422 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 3256361 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 3256300 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 3256239 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : AGCGCGCGCGGGCTACTGCACTCGGTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTATTATGTTCCCTGCATCAGCGGGGATAAACCGGACTTGTTATCATTTTTTAAGTTGTCGAACTTATGTTCCCCGCGTCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5702163-5701094 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050206.1 Escherichia coli strain RH-048-MS chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5702162 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 5702101 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 5702040 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 5701979 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 5701918 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 5701857 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 5701796 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 5701735 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 5701674 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 5701613 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 5701552 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 5701491 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 5701430 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 5701369 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 5701308 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 5701247 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 5701186 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 5701125 29 79.3 0 .......................TCCGGT | TTA [5701098] ========== ====== ====== ====== ============================= ================================ ================== 18 29 96.8 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : TTTTCCACTCTTTCCACCTGCCGGGATACGGTGGAACCATCGGCGGCGTGTACCTTGCCAAATCCGCTATTTTCCAGACCCACAACGGCATTACCGGAACGCAGTACTAGGCGTGGCGTCACCTCCTGAATCACCAGTACGGTGAAATCGCCTTTCTTCTGGATACTGCTGTTAACCACATGCTCTTTGCCGTTCAGCTCTTTGGTGACGGAAGGAATGGACTTAGACGGGGAGAAGCCCACGAACGTAAAGCGGCCATCGTCGTAAGCAAAATCGGGAACAATGTTGAAACTGCCTTTGCCCGGATATTTGGTGTAACTCCAGTTGCGGGGCGTCTGCGCCGAGTTCAGCGCTTTCTGGACGCTGGCCTGTTGCTGTTTCTGCTCCCACTGTTCTTAACAAATACATCGCGTTTTTTATTTTTATTTTTATTTTTATTTCTTATGCACAAGAATAAATTATATGCATATGATAATTTCTCATTCAATGCGGACGTGCAT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //