Array 1 458673-459676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMZ010000001.1 Micromonospora carbonacea strain DSM 43815 Ga0415184_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 458673 28 96.4 33 ...C........................ CGGTGGTCTCCAGGGTGGCCGTGGAGTCCTCGT 458734 28 96.4 33 ...C........................ GGCTGCGGCGGCGTTCCCCGGCATCATCGAGGA 458795 28 96.4 33 ...C........................ GCGCGCCCGCCTGGTCCTGGCGACCGGTCGCAC 458856 28 96.4 33 ...C........................ GACCGACCCGACGTTCAGCATGAGCGGATTCCG 458917 28 96.4 33 ...C........................ CGTGTCGAGCGGCGTGCGGGCCGTGAGTGTCGG 458978 28 96.4 33 ...C........................ CATGAAATTGGGCGGGGACGACTGGACGGTCAC 459039 28 96.4 33 ...C........................ CCGTCGACACCCGACATCGGGGCCCAGTCCAGA 459100 28 100.0 33 ............................ GTCGACGGTGGTGGGGGCGGTGCGGGTCAGCAG 459161 28 100.0 33 ............................ GGGATGAGATGGCACGCACGTTGCCGCCGATGC 459222 28 100.0 33 ............................ CGGGCCCGGGCAGGGGGCAAGCTTCGACATCGA 459283 28 100.0 33 ............................ CGAAAGTCTCAGCCCTCGGCTCGGTCGGTGAGA 459344 28 100.0 33 ............................ CTGCCCGTACGTGAGCGCCAGGTCGGTGCCCCG 459405 28 100.0 34 ............................ TAGCTGGGCCGCCGCATGGGCGTATCCGGCTCAC 459467 28 100.0 33 ............................ GTGGTTTTCGGGCACCGAGCAACCCGGCGTTCG 459528 28 96.4 33 T........................... CACGGTCCGGTCTACGTCCGGTGAGGGCGGGCC 459589 28 100.0 33 ............................ CACCGCTTCTTCCGGTAGGGCCCGGCCGTGGGC 459650 27 92.9 0 .................-......G... | ========== ====== ====== ====== ============================ ================================== ================== 17 28 97.9 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : AGCCGTAGAGCCCCAGCGTGACCACGCCGCCCGCGATCCAGAGCAGCCCCCGGTGCTCCCGCCAGCCCTGCCACACCAGCCAGGCCCCGCCGATCTCGGCGAGGGCGGCGAGCAGGAACAGCAGGATCGAGCGGGCGACCGTCATGCGTCAGACCGTAGCCCTGTGATCCCTCGTCAGCGGTAGTTGGTGTGGAGTTGCCGAACGGTCGTGGGGGTAGGGGTGGGTGTGCGATCCGGTTCACCGCCTACTCAGGCAGAGCCGAGCGGGCCGGGGCCGGCATGGTCGTTCGTCCTGTGGGGCGCTCCACCTTGTCGCCTTGGCCCCCTTCTCCGTCGTGGGGGTCGGCGTAGGACGGGATGGCGGGGGCATGGTGTGCGCCAAGCGCGACGAGTCAGCGGTACCTTGTCACCAGTAGACGGGCGGCACGGGCGGAGAGATCTTGGTCAGGCAAGTGAATGAAATCGACGTTGTTGATCTTTAGCGGCCCAGGTCAGGAAGT # Right flank : CCACCCGGTAGCGGACCCAGGCCGTCAAAAGGCCGGAGGAGGGCGACCAACGACGACCAGAGCCGCCGAGGTTCGCCCAGCTCACACGGCGCGGCTCGCTGCCCGGCTAAGAGCCCGACCGGGCCCTTAGCGGTAGTTGGTGAACTGGAGCGCGATGCCGAAGTCCTCGCTCTTGAGCAGGGCGATGACGGCCTGGAGTTCGTCCTTCTTCTTGCCGGTGACCCGGAGCTGGTCGCCCTGGATCTGCGCCTGGATGCCCTTCGGGCCCTCGTCGCGGATCTTCTTGCTGATCGCCTTGGCCTTGTCCGAGTCGATGCCCTGGACCACCTTGGCCTCGATCCTGAAGACCTTGCCCGAGGCGCGCGGGTCGCCCGCGTCCAGGGCCTTCAGCGAGACGTTCCGCTTGACCAGCTTCTCCTTGAAGACGTCCAAGGCGGCCAGGACCCGCTCCTCGGTCTCCGCCTGGAGCCTGATCGCCTCGTCGCCCGTCCAGGAGATCT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1281609-1281033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMZ010000001.1 Micromonospora carbonacea strain DSM 43815 Ga0415184_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1281608 28 100.0 33 ............................ TCCGCACGATGTCCGGGTAGCCGAACCCCGGTA 1281547 28 100.0 33 ............................ CAGCTCCGCGACGGCCTCGTCATCGCCGTTGGC 1281486 28 100.0 33 ............................ ATAGGGAAGTGTAGAAACTGGGGTCACTTCGTC 1281425 28 100.0 33 ............................ CGTCAACTCGACGACGCAGGTCGCCGCCGCGCT 1281364 28 100.0 33 ............................ TCGAGCCGATCGGCCCGCCGACCGATCACGAAC 1281303 28 100.0 33 ............................ CGCCACCGACGCCGCCGTCGGCGCACCACCCTC 1281242 28 100.0 33 ............................ GCACGCTGTCGGCTTGACCGCCGTGGACGCGAA 1281181 28 100.0 33 ............................ CGTGCTGTCGACCACCGAGGCTTGGCCCGCACG 1281120 28 92.9 33 ...CT....................... TCCCGGCCCGTTGTGCGGGTCCAGCTCCACGAC 1281059 27 75.0 0 ...CT..G......T......-..CC.. | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.8 33 CTGTGCCCCGCGCACGCGGGGGTGATCC # Left flank : GCGATCTATCTCGACAAGCCGCACGAGACAGCCGCCTACAACACCATCTGGGCCGACATGGCCAGCCGCGCCCTCAACGAGTCTCGATCCCAGAGCCTGATCCAGCAAGCCGCAGAGGAGTACTCCCGTGCCTGACCTGACCGGTGCCGTCTGGCGCAAGTCGACCCGAAGCAACAACGGCGGCAACTGCGTCGAGGTCGCCGACAACCTCCCGGGCGTCGTCGGGCTACGTGACAGCAAGGACGTGACCGGGCCGGTGCTGACCTTCACCCCGTCGTCCTGGGCCACCTTCATCGAGGACGTCAAGGCCCAGCCACCTGGCTGCTGAAACTGGCAGGAGGCTGCGCCACGGTTCCTCTCCTGCCCACCGAAAACGCCGGTCAACTCGTAGGCTGTTCACCACCTAGCCTGGACGCCCAGCCACCACTCAGGATGTGATCTTGGCCAGCAAAGTGAATGAAATCCGCGCAGTTGATCTATGGCGCCCCAGGTCAGGAAGC # Right flank : GTGTGTCCTGTAGGTGTGAAGCTGCCGCACAACGGCAGTCGGGGCGATGGCGCGCTGCGACTGTCAGCGACTACTATCGATCGGCGCAGTCGCGCACCGGTCGTGATGTTGCAGTGACCTGGAGTCATGGTGCCTCGTCCCGAACGCCAGATTGACCCTGAAGCGGGCCCCATCCAGTCGTTTGCCGCAGAGCTTCGACAGCTCCGCGAAGCAGCAGGCTCGCCGAAGTACCTCCAGATGTCGCGCGCGTCGGGCCGGTCCAGAACCGCCCTGGCCGAAGCTGCCGGCGGCGATCATCTGCCCACCTGGGAGACGGTCGAGGCGTTCGTCAGGGCATGCGGCGGCGATGTCCGTCAGTGGCGGGTGAGGTGGGAGACGGCGCAGGAGGCGATACGGCCGGCAGAGTCGCCGTCACGCAGTGGCGCGGCAGCTACCGTCGCCGATCTCCCTGACGATGCGTCGCCCCTGGTCGCCGGACAGCCGGCGATCCGCCGTCGGCT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTGCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 4626168-4624366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMZ010000001.1 Micromonospora carbonacea strain DSM 43815 Ga0415184_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4626167 28 100.0 33 ............................ CGGGTCCGGGCCCGCCGGCTGCCGGCCGTCGAT 4626106 28 100.0 33 ............................ GTCACCGAAGCCCCGGCGGGTAGCAATGCGAGC 4626045 28 96.4 33 ...............C............ TTCGAGGGCAACCAATGCGCTGACCGCGCGTCC 4625984 28 100.0 33 ............................ CGCCTGGTACCCGTCACGCAAGACGCACCGGCC 4625923 28 100.0 33 ............................ CGGCAAGGCCGACGTCGCCGGCCGCATCCGATT 4625862 28 100.0 34 ............................ ACTCCAGCCCCGGATCACTCGCGAGGGCTTTTGT 4625800 28 100.0 33 ............................ GCGGGTCGCGATGGTGCCGACGTCGCCGGCGAT 4625739 28 100.0 33 ............................ CGACTGGACCGTGAGCCGGCCGGGCGGCTCGGG 4625678 28 100.0 33 ............................ TCCGTACGGGGGCTTGCCACTCACATACCCGCC 4625617 28 100.0 33 ............................ GTTGATGTTCGGGCGACCGGCGGCGCGGTCGCC 4625556 28 100.0 33 ............................ GGTCGGCATCAAGCTCCCGCGGGTCGCCCGGGA 4625495 28 100.0 33 ............................ CAACGGTTATCACCTGAGACGCGCGCCTCACAC 4625434 28 100.0 33 ............................ CTGAAGCGCGAGAAGCTCGCCGACGGCGACAGC 4625373 28 100.0 33 ............................ GGGGAAGGCGGACACTAAAACCGCTGAGGGTGC 4625312 28 100.0 33 ............................ GGGGCGATCTAGCGATTCGGCTAAGGTAACCGG 4625251 28 100.0 33 ............................ CTGGGCGTCGGCCCGGGCGTCGGCGTGCGGGAA 4625190 28 100.0 33 ............................ CCAGGACACGGCGTCCACGTCCGGCTGCGCCCG 4625129 28 100.0 33 ............................ CTCCGCCTCCGTGAGCCCCTGGGCGCGGGCGAG 4625068 28 100.0 34 ............................ CGGTGCCCGTCCCCCGGCACCCTTCCGGCCGCAG 4625006 28 100.0 33 ............................ GGTGTGGCCGGGCCCCGCGTGCTGGGTGGGGTC 4624945 28 100.0 33 ............................ CTGGGCGAGGTCGACCCAGTCGTAGAGGAGGGT 4624884 28 100.0 33 ............................ CGGGGAGTCGCGCCGCGCCGCCCACCGGGACAC 4624823 28 100.0 33 ............................ CGTCGTCAGGCCGGCGGGTGTGCGTTGCTCGAC 4624762 28 96.4 33 ..................T......... GGGCCTCGCCCCGTGGTCGTCGGGGATGCTCGC 4624701 27 96.4 33 .................-.......... GTGTTTCGCGCGGCCACCGTCGACCAGCCGGTC 4624641 28 100.0 33 ............................ CGTGCGGGCCTCCTTGAGGGTGGCGGTGCGCGC 4624580 28 96.4 33 ...............A............ GGGGAAGTGTGCCGTGTCCACGGTCCACGCGCC 4624519 28 89.3 34 ............TCG............. CGGAGCGGCAGAGGAGCAGCCAGCACTGCGGGTC 4624457 27 82.1 33 ...........TTG.......A..-... GAGCTGGGCGGTGCTGAACTCCATCCGTTCCGG 4624397 28 89.3 0 .....T..G..................T | C,AGA [4624368,4624373] ========== ====== ====== ====== ============================ ================================== ================== 30 28 98.2 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CCTGCTCAAGCCGCCGTTCCTTGATCACGATCCCGGCTGGCCGGCGCAGCCCATCCTGATCCGCATGAGGCGACGCGCGGCAGGCGCGCCGTGACGCCGACGCTCGACGGGGCCAGCGACGTCGAGCTGTCCGGCTTCATCCACCGGGAGCTGGGCGGCCCCGACGGCAACCTGGGTGGAGCCCTTTGACCGGCTCGACGGCCTGGTGAGCCGCCGTTGGCGGCCGGAGTGGGAGAAGACGGGCAGACCCTGGGCCGCCCCTTGCCGGGTGGCCTGGGTTAGGGCTGCCTCCGGCGGGGGCAACGACTCCAGGATGGAGTTGCCGAACGGTGGCGGTCATGGGTGGTGGGGATGGCAGGAGCGGGGGCGCGGTGCGTTGAGCGCGGAGCGTCAGGGGTACTTTGCTTATCGGCAACCGGGCGGTACGGGCGGGGAGGATCTTGAGCGGGCAAGTGAATGAAATCGGCGTTGTTGATCTTTAGCGGCCCAGGTCAGGAAGT # Right flank : TCATGGGCCGGCGATGGCGGCGGTGAACTGCGGGGTTTGCTCCCGAAGGGGGTGGTCCTTCATTTGAGCCTTGGCCCGTCCGGCTGCTGTTGTGACTACTTCGTCTCAGCCACGAAGACGCCCTTGCCCTGCTTGCCGTACACCAGGCCGCGATCGTGCAGCAGGCCGAAGGCCCGATTGATCGTCGCGAGCGAGACGTGGTTCTTGTCTGCGAGTTCGGCGGTGGAGGGCAGCTTGTCGTGTGCCTTCAGCTCTCCGGACTTGATCTGCCCGGCGATGCCGTCAGCGATGCGGCGGTACTCGGCCTGCTCGTATGGCACGAGGGGAAGTTTAGGTCGGCAAGGTCCTCACTCACCACAAGATCAGCAATATGTCAAGGTCTGACTTAAGTCAAGTCATGACGTATGTTGGTTTCGAGACGCGGCCGGCAAGGCACGATGTCAACAGCCAGGGACGGAGTCACATGGAGCCGAGTACCGACACGGTTGGAGACGGGCCCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 5129841-5130178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMZ010000001.1 Micromonospora carbonacea strain DSM 43815 Ga0415184_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 5129841 28 100.0 34 ............................ GGCCGGGACCGGGCCGGCCGGCCGGGAACTGGAC 5129903 28 100.0 34 ............................ CCGAGTCCGGCCTGCGGCACCTGCAGGACGAGAC 5129965 28 100.0 33 ............................ GAACAAGACCCCCACTGACGGTCCGTACGCATC 5130026 28 82.1 38 ...................A..C..GGT GATCCGCCGTTCGGGTCGCACTCGTAGGTGCGCAGGTC 5130092 27 92.9 32 ....C............-.......... CCGGCATGACCATCTATGCCGATCGGGACGTC 5130151 28 75.0 0 ...........T..G..AAA...A...G | ========== ====== ====== ====== ============================ ====================================== ================== 6 28 91.7 34 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : AGGTCCGCCGATGGGGGCTGGGTGGGACACCTGGAGAACCAACTCTCCGGCTTGGTCACCGACAGCGAGGATGAGATGGCTACGCTTCTGGGACGATGGGAGGGTGTGAGAGGACTCGCCCTGCCGCGCGACCTGTCCCTCGCTCTGATGAAGGAAGTGGAGAGCCAACATGGACCTCAGTAGCGCGCGATGGAGGAAGTCCACCCGAAGCGGCACGAGCGGCGGCGACTGCGTTGAGGTGGCCCCCAACCTGAACGGTGTGGTCGCCGTCCGCGACAGCAAGGACCCGTCCGGTCCAGTGCTCGCGTTCACCCCGCAGACCTGGCGCGCATTCGTCGAGCACACCAAGCACCCCTAGCCTCGTTCTGGCCCGCAGGCGAGGCCACCCGATGACAGCACAGCCTCGCGTGCGACGCCGAACAGTCGTAGCCAGGAGAGGATCTTGCGAGGCAAACCAAAGAAAAACGAGGGTTGATCTTTAGCGCCCCAGGTCAGCAAGC # Right flank : GGAGAGGGAGTCGAGGTCATCCAGCATCCAGGCGGGAACAAGTGGCTTAGACCAGCCAGGAAGGCCGGTGGAGGGCTCATCCCCCGCGTGCGCGGGGAACAGGGCCCGGCCCCGCCAACCGCCATCGTGACGTCGGGATCACCCCCGCGTGCGCGGGGAGCAGGCGGCGGCGATGCGCTGCCGGCGCTGATGGCCGGGATCATCCCCGCGTGCGCGGGGAGCAGGTCCGCGACGGGTCAAAGCTGCGCGACCCCGCAGGATCACCCCCGCGTGCGCGGGGAGCAGGGCGACAGCCTGCTGGTCCGGGTGCGGCTGGCGGGATCACCCCCGCGTGCGCGGGGAGCAGACTTCCTGACCTGGGGCGCTAAAGATCAACTAATTCGTTTTCCTTCACTTTGCGCGGCAAGATCGTCTCCTGTGAGAGTCGACTTTCGAGGCAAGTAGAGCGAGGACAGCCTAATGGGCACGTCGATGTCTGGAAGAAGCACGGCACCCGCCCT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 5 5875412-5876416 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMZ010000001.1 Micromonospora carbonacea strain DSM 43815 Ga0415184_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5875412 28 100.0 34 ............................ CGGCGTGTTGACCGAGAAGATCAAGGCGGGCGTC 5875474 28 100.0 33 ............................ GGAGGCGAACCGGCGATGACCATCCCCGACCTC 5875535 28 100.0 33 ............................ CGCGACAAGCGAATCAGCGGGCGCGGACGGGCC 5875596 28 100.0 33 ............................ CGCCACCACCACCGAGCGGGCCCTCGTCGCCAA 5875657 28 100.0 33 ............................ CCGAGGCCGCCTCTTCTTCCTCCGGGTGCCCGT 5875718 28 100.0 33 ............................ CGTACGAGTCGTACTGCGCGGCGGGCCAGGGCT 5875779 28 100.0 33 ............................ CGATCGCCTCAGCGGCCGGACGGTGCGTGCTGC 5875840 28 100.0 33 ............................ CAGGATGCTTTTTCCCGAGCCGGTGCCGCACGA 5875901 28 100.0 33 ............................ GATCGGCCACACCGACGGCCGGTTCACCGACCC 5875962 28 100.0 33 ............................ CGATGGCGACCGGCTGGGCGCTGAACGCGAACG 5876023 28 100.0 33 ............................ CCGATCGCGTGATGATCTCGATCGTGCCTGGCG 5876084 28 100.0 33 ............................ GATCCACCGCCGGCTTCTGCTGGGCGCGGTCGG 5876145 28 96.4 33 ..........................T. CGCGCGCCGGCGAGCCGGGTCGAACACGGCGCC 5876206 28 96.4 33 ...........C................ TGAGCGTGAATCGGCGCTCCGCCTCCGTGCGCA 5876267 28 100.0 33 ............................ CTCATGTGCACGTCGTACGCGGAGGGGGTGTAG 5876328 28 96.4 33 ...................C........ CACACCGCCCGCCACCGTCTTGTTGGCCAGGGC 5876389 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 17 28 99.4 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GACCGGGGCCGGACGCGGGCGGTGCTGTGGGTGCTGGCGGGCAACGCGCCGGCCCGGCGCTTCTACGAGCGGGGCGGCTGGCAGCCCACCGGCGAGCGCCGGGAGGAGCTGATCGGCACCGCCCTGACCCCCCAGCTCCGCTACGCCCGCGCTGTGTAAGGAAGGGCCCCCTGTTAACGCATACGGTAGAGAAGGGTTCCCCTCTCACCCTCGCCCCGAGCGCGCCGCCAGGCGGCCAAGCTAGAGGCGTACGTGGTGACGGCGAGCGGGCCGCCGACGGACCCCGGTGCGCCGGTCCAGCCGCTCCTTCCGTATCCGGAGCGCAGTACCTTGGGGTTCATCGGATCGCCGATCGCTTCCTTCAGTTCAGCGCCTGCCGACATTAGGCTGTGCTCGCCCTCGCGGAACGTGCCGGAGGAAGGGGCATTTGGCAGATGATCTTGCGCAGCAAAGTGAAGGAAAACGAGGAAGTTGATCTTTAGAACCGCAGGTCAAGAAGT # Right flank : CGGCGCAGAGGCCGGCGCAGGTCTTCGACCTGGACTGCTTCGCACGTGGACCGATTCCAAACGCGGCGGTCCGCCGAACCCGTCCAGGCCGCACCGGACCAGCCCGGACGGCCGGGAGCCGCACGGCCGCGCAGGCGACGAGCCGTACTCCCAGACGACGAAGGTCCCCAGCCTCACACGCTGGGGACCTTCGGCGGCGTTCGGGGGAATCAGCCCAGCGGGCTGCTCTTCTTCGCCAGGTCGACGAAAGACTGCCAGGTGCCGGGGGTGAAGCGGAGGGTGCCGCCGTCACGGTCCTTGGTGTCGCGCACCAGCACGACGCCCGGCATGTTGTCCGCGACCTCGACGCAGGACCCGCCGTTGCCGCCGGACCTGGTCGACTTCCGCCACTGCGGGGTCGTCATCGACTCCATGACTTGGCCACCTCCTTGATCAGTTCGATGGACTGCCGGCGGGAAAGCGCCTCGTTCCGCACGATTTCCCACGTCTTCGCGAGCCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 6 6529267-6528812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMZ010000001.1 Micromonospora carbonacea strain DSM 43815 Ga0415184_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6529266 29 100.0 32 ............................. AGGCCGGACGCCTGCCGCAGGTTGACCAGCGC 6529205 29 100.0 32 ............................. GTCATCACCAGCGCAGGCCCCGAGGCCACGCA 6529144 29 100.0 32 ............................. ACGGTGCGATCCTTGGCGATCAGGGCGACCCC 6529083 29 100.0 32 ............................. CGGCGCCGGACCTGCCGTTGATCAGTGAGTAC 6529022 29 96.6 32 ............................G AACATGAACCCGAACGGCAGCATGAGCAGCGC 6528961 29 100.0 33 ............................. GAGGTTCTGCGGGAGGCGACCCAGTCGTACCTG 6528899 29 93.1 32 ..........T.................G TAGACCGGGCTCAGCATCGGGTCGTCCTAGAA 6528838 27 89.7 0 ..........T--................ | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.4 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : TGTGGGATGAGGGAGGCTACGAACTCGCCGGCGGCCGGAACTACTCCGGGGACGTGGACTTCTGATGACGGTCATCATCCTCACCGCCTGCCCCGAAGGGCTGCGTGGGCACCTGACGCAGTGGCTGCTGGAGATCTCCGCCGGGGTGTACGTGGGACACGTGAACAGCCGGATCCGACAGCGGCTCTGGGCGAAGGTCGTCGAGATGGCCGGGCCAGGCCGGGCACTGCTCGTCTACCAGCGGCCAGGCGAGCAACGACTGACCTTCGAGGTACACGACCATCACTGGGAGCCGGTGGACTTCGACGGGATCTCGCTCATGCGTCGGCCTACGGATCGGAGTTCGTACAACCCAGCAGTGGGGCGGGGATGGAGCAAGGCGTCCAAGCGTCGGAAGTTCGGGCGGAGGGCCCCGGACGGGGCCAGTGGATTGTCGACACCCTCCGGGCAAAGTGAAGGAAAAGGTGGTAGTTGATCTTTAGCGCCCCAGCTCAGGAAGG # Right flank : CAGTACGTCATTCGGAAGCTCAGGGCCGCCTGATCATTCCGCGCTCGGCGGCGGGTGCGTGGTCGCCGCATGCCGTCGTCGTAGCGTCGACTCGTGGCGGTACGGTGACCTTCCGTGGCCCGAGCGGGCCGCGCTGACAGGGAGGTGCGCGATGGGAGCGCCGGACGTGGTGGCCCAGCCGGTCGCCGGGCTCGACGAGGTCGACCGGCCGCTGTTCACCTTCTGCGACGACGCGACCGGCGACCGGGTCGCCCTGAGCGCCGGCGACCTGGGCGGCTGGGCGGCGCGCACCGCCGGGCTGTTGCGCGACGGCTGCGGGCTGGCCCCGGGCAGCCGGGTCGCGGTGCTGCTGCCGCCGCACTGGCGTACCGCCGCCGTGTTGCTGGGTGCCTGGTCGGTGGGTCTGGCGGTGTCGTTCCGGCCCCGGGCCACCGCCGGGCTGCCGGTCCTGGAGCCGGGCGGCGACCGGCCGTACGACGCGGTGTGTGTCACCCCGGAGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 6539066-6540008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMZ010000001.1 Micromonospora carbonacea strain DSM 43815 Ga0415184_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6539066 28 100.0 33 ............................ GAACGCGTTCTTCTCGCCCCCGGAGAGGAAGTC 6539127 28 100.0 33 ............................ GGTCGAGGCGGCAGCCGGGATCCCGCCGGAGCC 6539188 28 100.0 33 ............................ CGCCTCCAGGGCGTCCGGCTCGGCGCCGAGGAC 6539249 28 100.0 33 ............................ CAGGTACCGGTGGTCACGGCGCTGCGCCGTGGT 6539310 28 100.0 33 ............................ CACCCGGCCGGGCAGGTCCGGGTCGTGCACCGA 6539371 28 100.0 33 ............................ CGCGGCCGGCGCGAACATCGAGCGCGGTTTCTT 6539432 28 100.0 33 ............................ GGTGTTCGCCCGCTCGGCCGCCGAGGTGAAGCC 6539493 28 100.0 33 ............................ CTTTGGAACAGGTCCGCCCCCGCAACCTCGGCG 6539554 28 100.0 33 ............................ CGCACCCGCCGGCACCGACGGCTCCACCGGCGA 6539615 28 100.0 33 ............................ CGGTCACGCTGAACGCGGGGAATCAGCCCCTCG 6539676 28 100.0 33 ............................ TGCTAGCCGCGTGTCTCGCGTCTCTCAGCATTC 6539737 28 100.0 33 ............................ CGGGTGCCGACGCGCCGCAGCGACCGCGAGCAG 6539798 28 100.0 33 ............................ GAGCAACATCGCGAACATCCTGAAGCGGCTCAC 6539859 28 100.0 33 ............................ GCAGCCATCTGGGCGCACAACCGGGCCACCAAC 6539920 28 100.0 33 ............................ GAACCCGCGGTCGCTGGGGGTGATGACGAACAG 6539981 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : AGGCAACGGCGCAGCGATCCGCCGCCGGACGCTCTCCGGCAGCCACATGTCCCACAGCAGGCCAGCGACATCGGCGCTGTCCACGAGGTGACGATGCAGCGGAAGCCAGAAACCCCTCTCGCGGTTCGTCTTACCCCAGACAAGACGGGCACTCTCGCTGAGACCAGGTTGGTCGGGCACGGAAGGGATGAAAACAGAGGGGTACGACACCTGACGACCAACTCCCAGGGACGACTTTCAGGCCGACCGCGCGGCCGCCTTCAACATCGAGAACGACGCTCATGTACGCCCGGACGCGGCCTGGTCGAAGACCGAGCGAGATTCATCTGACCGTCGGAACCCCTCCCCGTCGCACACCCCCGCGGGGACTCCATCGGTACGCTGAGTCGGCTGCACTCACACCACCCCCGTCGGCATACTTGAGCGCAAAGACGATGATCTTGAGAGGCAAAGTGAAGGAAAACGAGAAAGTTGATCTATAACGCTGCTGGTCAGGAAGT # Right flank : CCCGTTACCTTTTTGATCGTCCCCAGTCGGGGACCCTCGGTCGCCCGGCCCGGTATGACTTCCTGCCCCTGTCGTTTCGATGATCCGGGGGGTGTTGTCGCCGGGTCGGGTGGCGTCGGCGGACCGCTGATAGGGACACGGCCGCCCCGTGTTGGGGTAGGTCTCTTCGTAACGTGGCTGCCGGCAGTCCGACGCCCAGACTGCGGCCGGGGCCACGAGTGATGCGTGGAGGCGGGTGTGGTGCACGACGGATACGGTGTCTACCTCGGCTTGGACGTCGGCAAGGGTGATCACCACGCGGTCGGGTTGACCCCGGACGGCAGACGGTTGCACGACGCGCCGCTACCGAACACCGAGGCCCGGCTGCGGCAACTGTTCGACAAACTCTCCCGTCACGGCCAGGTCCTGGTCGTGGTCGACCAACCCGCCTCGATCGGTGCCCTGCCGGTGGCGGTGGCTCGGGCGTGCGGGCATCAGGTGGCCTACCTGCCCGGGCTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 8 6543784-6545274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMZ010000001.1 Micromonospora carbonacea strain DSM 43815 Ga0415184_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6543784 28 100.0 33 ............................ CGGGACACCATCGTGCAGATGCTGATCGACGGT 6543845 28 100.0 33 ............................ CGAGCGGTACACGGCGCAGCGGCCCACCACGAA 6543906 28 100.0 33 ............................ GGTGCTTGGCGGGTGTCGCCCACCAGGCGATCG 6543967 28 100.0 33 ............................ GGCCGCCCAGGAGCTGCTGGAGGCACAGCTCCG 6544028 28 100.0 33 ............................ CGGGGTTGCCCCACATCCAGCGAGACAGCATGC 6544089 28 100.0 33 ............................ ACATCACGAACCTCAGCGACCTGTACGCGGTCC 6544150 28 100.0 33 ............................ CGATCCGGCGGCGGTGGTTGCGGAGGTCGAGCA 6544211 28 100.0 33 ............................ TCGTGGGTGCGCGCCCTGGTGTCGTTGGAACAG 6544272 28 100.0 33 ............................ CGCCAGTTCGACTACGGCGAACATAGCGACCCG 6544333 28 100.0 33 ............................ CTCACACCGTCCACCGGACCGGATACCGATGAC 6544394 28 100.0 33 ............................ CAGGAGTGCGGCAGCGATGAACAGGGCTCCGGT 6544455 28 100.0 33 ............................ CAGCCGCAGGTCGATGCTGTCGGCGTGGACGGC 6544516 28 100.0 33 ............................ CGCGCGGAAGGTCGCGAAGCCGGGTCAGAAGTA 6544577 28 100.0 33 ............................ CTGCCCGCAGTGCGGCCGGATCGCACCCGGCCG 6544638 28 100.0 33 ............................ CGGCAGCGGCTGGGACCTGTACGTGTCCGACCC 6544699 28 100.0 33 ............................ CGCCCCGCCGTCGTCGACGGCGGTGATGCGGTA 6544760 28 100.0 33 ............................ CGTTCGTACTAAGAGGTAGTGCGTAGAGCTGTC 6544821 28 100.0 33 ............................ GGCTGACGAGTCGCCGCGAGGTGCTACCAGCAT 6544882 28 100.0 33 ............................ CAGGGCGCTGCGGGTCTGGGTGTAGCGGGTGGC 6544943 28 100.0 33 ............................ CATGTCAGCGTCCTTGTAGACGCCCACCTTCGG 6545004 28 100.0 33 ............................ CGTCGTGCATCTGCCAGCCCAACCCCACGCCCA 6545065 28 100.0 33 ............................ GTAGCGCTGCCGCTGCCGGGCCTTGTCGCCCTC 6545126 28 96.4 33 ............T............... GCCGCGAGGACGAGCCCCATGGCCGCCGCAGAC 6545187 27 96.4 33 .....................-...... CGCTCTCGGGCCCGCCGGTCGGGGTCGCAGTAG 6545247 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.7 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : AGCACCGGCGGCCGACCGACCTGCCCGAAGCCCAACGGCACGTCCGCTGGCGGGAACCACAGATCGCACTGCGCCAGCTCACCGGGCAGATACTCCGTCCGCTGCGCCGGGTCGGGTCGGCGGAACAACGGCCGCAGCTGCTGCACCCGATCAGCGAACACCGTCTTGCCGCGGGTCCACCCGACCCGTTCCATGATCACCGTCGTCGGCATGTCCGGGAACTCGGCCAACAACGCCCTGATCTGCGGCTCGACCGCGTCCACGATCGAACCCTTCGCCGCCCGCTGATAGCGAGGCGGCTCATGACTGGCCAAGGCCTTGCGCACCGTGTTCCGCGAGACACCCAGCCGCCGACAGATAGCCTTGATCGCCATCCGCTCCGCCCGGTGCAACCGACGGATCTCCGCCCAGTCCTCCACGCTCAGCACCTCCCGATGCTTCCGAAAGGGGTCAAGATTCAGCCGGAACCACGGGGTCAGTTTTCAGGCGGAGCCGACATA # Right flank : CCAGTTAAACCCCAGGCTGAGGCCCTCGACGGCAGCGAGGACCTCAGACTTCAGCGACGAAGACGCCTCGCCCCGGACGCCCGACCAGCACGCCGCGCTTCCGCAGCGTCGCCCAGGCTCGGTTGATGGTGGAATGCGAGACGTCGTACTCGGCCGCCAGGGCACGCCCTGACGGCAGCTGCGAGCCGGGCGGAAACTCGCCCTCCTCGATGCGCCTCATCAGGTCGTCGAGCAGCTCGTCCATCGTGGGCGGGATAGGCACGTGGGGCCCCTTGCAGTCGGTTGGCCCCGCCAGTATCGATCCGTAGATCCGCCACAGGCAAAACACCTAGCCCAGCCGGCATAGATGACAATAATGGCTCAGTGGTCCAGAGGATTACTTGACATAGGTGAGATCACTCCGTAGCGTCGCTGACAGTGACGCGCTCCGTGCGGTCGGTTGGCGCTCTCCGTGGGTTGCTCGTCACCACAGCGCATTCCCCCAGCCCGGGGTGGCCGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 9 7072985-7072530 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMZ010000001.1 Micromonospora carbonacea strain DSM 43815 Ga0415184_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7072984 28 100.0 33 ............................ CTGGAAGATCACCGTGCCGGTCCCGTCGACGAG 7072923 28 100.0 33 ............................ CCGCTCCGAGCCGCCGTCCAACGGCGAGCTGTC 7072862 28 100.0 33 ............................ GCCATTCGATCGATGGTCGCCGCGTGGGCTGGC 7072801 28 100.0 33 ............................ CTCCCGAAGCGGACCGGCAAGGCACAGAAGGTC 7072740 28 96.4 33 ....................C....... CTACATGCTGGAGCGCAACGTCAGTGCCACCTG 7072679 28 100.0 33 ............................ GGAGCAGCCTGTGTCCGCCACCGCCCGGCCCAG 7072618 28 100.0 33 ............................ CAGATCGCGCGCCAGCTCGTCGAGCATCCCGTC 7072557 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 33 CTGTTCCCCGCGCATGCGGGGGTGATCC # Left flank : TCACCGCGGACCGGTCGACGGTCGGCCTGGGCGAGTTGCCGAACGGAACACCGTTGGCCGCTCCCGGGCCGGTGTGGGGAAGAGGTGAAGGTGGGAGAGGGGGCGGCGGGTGAGGGGCGGGGTTGGGGTTAAGGCTGCCTCCGGCGGGGGCCCAACGACTCCGGGATGGAGTTGCCGAACGGTTGCGGTCGTGGGTGGTTGGGGTGGGATGCCATCCCGTCCACCGCCGACCCAGGCAGAGCCGAGCAGACCAGGGCCAGGGCGACAAGGTCGTTCGTCCGGTAGGGCGCTCCACCTTGTCACCCTGGCCCTGGCCCGCTCCACGGTGTGTGGGTCGGCGGCGGACGGGATGGCAACAGCGGGGGCGCGGTGCGCGCCAAGCGCGGCGAGTCGGCGGTACCTTGTCACCAGCAACCAGGGCGGCACGGGCGGAGAGGATCTTGGTCGGGCAAGTGAATGAAATCGGCGCTGTTGATCTTTAGCGGTCCAGGTCAGGAAGT # Right flank : GGGCAGCGCAGAGGCAGCGAAACGGTTGCCAGTCGTTGATGGTGCCCGGGGCCGGCCGTGCACCATGGCCACCTGAGCAGCACCAGAAGGCAACGGCTTGCAGTCGATGGTGCGCCACATCGGCGTTCGGGACGAAGAGTTCAGCCCGCTCCGGGGCCAGGTGCAGGCGGCTAGGCGGTTCCTATAGATGCTGATGACGTGGCCACCAGCGCCTTCAGCTGTTCAACCGTCAGCCAGGGGCTGCCGCGGTGGGCCATCCGGTGGCAGTTCGAGCAGATCAAGGCGAGGTCGCTGAGCCGGGTGTGGGTCTCGCCGGAGACGTGCAGTGGAGTCCGGTGGTGGCACTCGATGTAGTCGCGTCCTCTGTCGCCGTAGACGCGTTGGAAGTCGAATCCGCATACCTCGCAGGCGATGGCGACGCCGCGGCGTTTGGCGTCGGCCAGCTTCTGGCGTCGGAGCTTCGGGTTGCGCTCTCGGCGAAGGTGAGCCCGCAAGGTGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //