Array 1 301436-300368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSSX010000003.1 Streptomyces olivaceus strain FXJ2.418 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 301435 29 100.0 32 ............................. TCTCCCGTGCCCACCCACTCTCCCCAGCCAGC 301374 29 100.0 32 ............................. TGGTCCCTCACTTCCACGGGAATAGCGTTCAC 301313 29 100.0 32 ............................. CTGGCGCGGGCCATAGACCGGCACCGCGACGA 301252 29 100.0 32 ............................. GAAGCGGGCTCCCTCCCGCAAGAGCGGGAGGG 301191 29 100.0 32 ............................. TGCTGTGCCATGCGGCGCCGGGAGGACGTGTC 301130 29 100.0 32 ............................. GGCCCGCCAACCGGCGGAGAGCATGCAGCTGC 301069 29 100.0 32 ............................. CCCGAAAGGACCACGCCGTGAAGGCTCTCACC 301008 29 100.0 32 ............................. ACTCACCGGCGCCTGGACCAAGTGGGCATCCC 300947 29 96.6 32 .........................C... CAGGCTGTCATCGACGCCGAGGAGCAGCTGCC 300886 29 100.0 32 ............................. AGCACACCTACACCTGGGGCCGGTGCGCGCTC 300825 29 100.0 32 ............................. AAGCGATGGGAAAGACGCAACGTCGAATTCTC 300764 29 96.6 32 ..........T.................. AGCCTGTTCGGCAACCTCGGCATCGTCGGCCT 300703 29 100.0 32 ............................. AGTTCGGGCCGTCGGGCCTTCAGCTTCGCGGC 300642 29 100.0 32 ............................. GGCTCTGAGGGTGGTGGGGTCGTCGATCTCAT 300581 29 100.0 32 ............................. CCCAAGGGCTACGGCCAGATGACGATCGCCAA 300520 29 100.0 32 ............................. TCCTCGTTCTCCTTGGTCACCGGTCCACCTCC 300459 29 100.0 32 ............................. GCCCTGATGCGCAAGGAGAAGGGCAACACGGC 300398 29 86.2 0 ...........A.T..........AC... | C,G [300375,300377] ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.9 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CTCCGGCCGGGAGAACGAGGAGGAGGCCTGGGGCAGGTTCCGCAAAATGCTCCAGCCGAACAGGCTCGACCGCACCGAGGTGCCGTTCGTCAAGATGCGCTACGACAACACCCGTACCCAGAGCATGAGCAAGGGCGACGCCCGCGGCTTCGCGCCTCTGGAGACTCTCCAGCGGGAACTGGGGCTGCTCGACGGCGCTCCCGGCAGCTTCGTCGAGTGGGAGAACCGGCACGGCGCCGTCTGGCGGGCGGACAGCAACAGCGACGGCCTCGAGCTGGCACACGACGGCACGCGGGACACAGTGGACACCGACCAACTGCAGGCAACGGCCCGCACCAGCGTCCAATGAGCTCTGCCCCGTGCCCGTTGCCCGCAGAGTTTATGCAGAAGCGTAAGGTGAGCCCGATTTACATCACATGCTGCTCATGTCTCATTTGCCGGGTCCTGTGCAAGTCACTGAAAGCATGCCCCTGAGCCCATAGACCAACAGGTCAGACAGT # Right flank : TGCGGAGATCGGCTTCAGGGGCGGTGGGTCAGTTCACCGGAGCTTCTCGCGCGTCTGCGCGCCGCTGGTGGGCGGCGCGCAGACGGGTGGGGTGTGCTCGGTGCGGGGGCGGTCAGGCCCAGCAGCCGTTGACGGTGGCGGCGAGGCCGTCCATGGCGTCCTTGATGTCGGTCGGGTCGGCCGTCGAGTTGTTCTCGATGAAGGAGAAGATCCGCCAGTCGCCGTCCTCGGTCTTCGTGACACCGCTGAGGGCGATGGCACCGGTGAGGGTGCCGGTCTTGGCCTGGACCTTGCCGACGGCGCACTCGGAGTTGGGGTCGTCGAAGCGGCCCCACTCCGGGCCGAGGCTCGCCCCGGCCTCACCGGCGACCGGCAGGCCCTCCAGGATCGAGCTGAGGGCGGGGGACTCGGTGATCGAGTCGAGGAGCTGCGCGAGGGTGGCGGCCGGGATGCGGTCGTCGCGGGAGAGGCCGCTGCCGTCGTGCATCTCGAAGTTGTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 302892-302493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSSX010000003.1 Streptomyces olivaceus strain FXJ2.418 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 302891 29 100.0 32 ............................. GGGGAGACCGACGAGTCGGGGGTGCTGGTGGA 302830 29 100.0 32 ............................. TGGACGGGATCCTTTGCATAGCCGCGGATCTT 302769 29 100.0 32 ............................. GCCACTACTCCGGGTCTTCTGGTCGGTCACAT 302708 29 100.0 32 ............................. CGGCTCGAGGACGCGGTCGCCGCGAAGTGGCA 302647 29 100.0 32 ............................. GCCCACGGCCCCGACCCCATGGGCCGCTGCGA 302586 29 82.8 37 ...............A.........GATG GTTCCTGGACCACACGCCTGCCGATGAAACCGCTGTC 302520 28 75.9 0 .......T....T........C.A-..GT | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 94.1 33 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : CCTCGCCATGGGAGGCAGTAAGCAGGTCTCCGGGCTCATCCATATCGCTGCAGGGGATCCCACGGTGCGTTTGTGGGTTCCCATCGTGTGTGTGCTGGAGGCTGAGCGTGAACGGGCCGGTCTCGTGGACTACTTGGGCATCCTCGACGTCTTGCATACCCTGGACGCCGACTATGCGATGGCGCACAGGATTGCTGACCTGTATCGCCGGAATGTTCCCTTCGGTGTGGGGGCTGCCGTGCACGCCGCCCAGCCCACGTTGGACCGTCCTGACGGTGCTCTTGTCGCGACGGTTGCGCCCGCCGACTACGACGGCCTCGGAGCTCCGGTCATGGATCTCAATCGGTAGCCGAACACCTGGTACGGCCGATGCGCGAGCTTCCTCCGGCTGGGCTGTCCGGTAGTAGTCTCGATGCATTGAGGGAATGGCCCTTTTGTCGGAATCTGTAAAAGTCCCCGAGAGTGCGTCGCCGCGTCCATGCGGCCGCAGGTCAATCAGT # Right flank : TCCGACCGAGCCGCCCGGAATGACTTCTACAACCGCTCCGACAACATGGGACCCATGTCGGGAAGCGAGAACTCTCGTGGCGGTGCGGTCATGGACGCCACCTACCGCCAGGATGTCCACCCCTCCCTCTACTCGTGCAGCTAGGGTCCTGTCCCGAAGTGCAGGAGCCACCTCATGAACCCTGGATCCGTCCTGTCCGCCCTGCCCGGCGCCGCTTCCGTTTCCGGTCTGGCTTCCGCGTGGCGGTGGTCGCCGAACCCGATGTTCACGTTCACCGCTGCGCTCTCCACCGACGGTCGGCACAACCTGCAGGTCAACGTACGCGGCCCCTACGGCGAGGGCTTCGTCACAGCACTGCTCGCCCACGCGCGCGCCCATGGTGGCACGTTCGTAGAGCAGAGGCGGCCTCTGGTGGCCGTCGGCGGCTTCCAGTACGACGGGGCGGCGTTCGACACGGTGGGGGTAGCGGCGCCCGAGGTGCACGGCTACCACGCCGCGGA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 305331-303823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSSX010000003.1 Streptomyces olivaceus strain FXJ2.418 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 305330 29 100.0 32 ............................. TCCGCGATCTGGCACAGTTCGTCGAGGACCAC 305269 29 100.0 32 ............................. GCTGAACTTCCTTTCCGTTCTGCGCTCCATCA 305208 29 100.0 32 ............................. AGCTCGCGCGCCTGGCCTCGATCTACGACCCG 305147 29 100.0 35 ............................. GGCGCGGCGGCGTTCCGCACGTCGGTGGCGTGCGG 305083 29 100.0 33 ............................. GGGCTGGGCGCCGCGAGCCTGCTGGAGTTGCAG 305021 29 100.0 32 ............................. GTCAGCAGCTGCTGGGAGATCGCTGCGTTGAG 304960 29 100.0 32 ............................. GAGGCGCAGGCGCGGACGAGCGCGGCCCGGTC 304899 29 100.0 32 ............................. AGAACGTTGATCAACAGTCGCGAAACGTTCAA 304838 29 100.0 32 ............................. GACGTCGCGGGCGCGCAGCTCGTCGCCGTCGA 304777 29 100.0 32 ............................. CGGTACAGGGTCGCGGAGGACAGGTATTGGGT 304716 29 100.0 32 ............................. ACCGCGCACCTGCCCGGCGCCGACCCGATCCC 304655 29 100.0 32 ............................. GCCTTCTCTGCGAGGGTGGCGAGGCCGCCGCG 304594 29 100.0 32 ............................. AACGACCGCGCGGACGCCCTCCAGCGCCGCGC 304533 29 100.0 33 ............................. CGCGGCCGGACAGCAGCAGAGCGGGCAGCCGTC 304471 29 100.0 32 ............................. ACCCCCGAGTTCCGGGGCACCGCCGTGTGCGA 304410 29 100.0 32 ............................. CCTGTCTACTACGCCCGGTGGGTGGAGTACGG 304349 29 100.0 32 ............................. GCCGCCCTCACCCTGGTGCGACGCGGTGAAGC 304288 29 93.1 32 ..G.........................G GTGAAGACGAACGTCACGTCGCCGGCGTCCGC 304227 29 96.6 32 ..G.......................... AAGGCGGACGTCTACGCCGCGACAAAGGGGAG 304166 29 93.1 32 ..G........G................. GACCCGCAGACGGCCTCCCTGCTCCACCACGA 304105 29 89.7 41 ..G................A.....T... GGGCCGTCGGCGGCGAACGTGACGTTCGCGGCGTTCGCGAC 304035 29 93.1 32 ..G......................T... GGCTACGACGGATGGCTGATCGACGCCACCGG 303974 29 93.1 31 ..G........G................. GCAGCAAGGGCGACAAGGACCCGGCCGAATG T,G [303948,303953] 303912 29 79.3 32 ..G....T...G...C........CT... AACACCCCGAACCCGACGGGCGGCGTGCAGGT 303851 29 82.8 0 ..G...............T...G.TT... | ========== ====== ====== ====== ============================= ========================================= ================== 25 29 96.8 33 CTCCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : TGGCACGCGAACGCCGGGGTGGCCTTGCCGATGTCGTGCACCCCGGCGAGCCACACGGCGAGGGCACGGGCATCCGGCTCTCCGCCGGGCAGCGCCTCGGACACCAGCTTCCGCACGCTTGCGGGCAGCCACTGGTCCCACAGCAGTCCGGCCACTGCGGCACTGTCCTCCATGTGCCGCCACAGTGGCAGCCAACCATCGCTCTCACGATCATGCTTCGCCCACACCGACCGTGCCGGCTCCCCAAGCCGACGCAGCAGGGCGGAACGGGCGTTCCCCCCATTACTCATGGGTGATTGATACAGGGAAAACCCGGCTAGCCATGCCAAAACGAAGAAACTGAAGAATCGGTCCAGGGTCAGCTCTCCCAAGACATACGATGAGCGGCTGACCCTGGAGACGTTACGATCGCGAGCATCACCCGAACGCCCTATTTGCCGGAATCTGCAAAAGTCTTGGAAAACGCGCTCCCGCGCCCATAAACCCACAGGTCAAACAGT # Right flank : GTGATCGCCGCTCGGGTGTGGCGGCGCTTGGTCGGCCCTGGCCCTGTGGCATGGCGCAGTGGAACCCGTCTCGTCGTTGATCTCTACTCTTGTTCAACTCAAGCGGTATTCGTCGGAGTATACTCTTCGTGTGGATACGACGATCAAGATCGATTCAGAGACCCGTGACAAACTGGCGGCTCTGGCTGACGCCAGGAACATGTCGATGCGAGCATTGATCGAGGAGTTCGCTGCAACCGCGTTGACTCCTGCGCAGTTGCGTGAGCGGGCCGAGCGTACGGACGCTTTCCTGGCCGAGGAATTCGGGCACCAGGTCAGCGAGGACGAGGCCGGAGCGCTGCGCGAACGGATGCGTCAGGCCCAGAGTGCAGGTCCGGCCCGGGGCACGGCCGCGTGATCGTCGAGCACTACATCCTGGACAGCCCCACGCTCCTCGCCATGGGAGGCAGTAAGCAGGTCTCCGGGCTCATCCATATCGCTGCAGGGGATCCCACGGTGCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 315782-317032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSSX010000003.1 Streptomyces olivaceus strain FXJ2.418 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 315782 29 100.0 32 ............................. TTGGATCACAACTGTGAGTTTCACTTGTAGTT 315843 29 100.0 32 ............................. GGACGGCCCCCGGGGGGCGAGGAAGGGAGAAG 315904 29 100.0 32 ............................. GTCACCAGAGAGGACCTGGCCAGGCGCATCCT 315965 29 100.0 32 ............................. CCGGCGCCGGATCTCTGTCCGCACTGCGGGAG 316026 29 100.0 32 ............................. AGGTCTGGAGTGACGGACGCAGGCCCTTGGTG 316087 29 100.0 32 ............................. TGATCGCGCGGGTGCGGAGTGAGGGTGATCCA 316148 29 100.0 32 ............................. CACGTGCCCTTGGAGTTCCACGTCCCCCTGGT 316209 29 100.0 32 ............................. GGGGGCTACGCATGATCGCCCGCCTCCTCTGC 316270 29 100.0 32 ............................. GCGGTCCAACCCCCCTCGCAACATGGCGGTGC 316331 29 100.0 33 ............................. CCCCCCTCGCTCCCTCGCACGCGAGGGAGCGAG 316393 29 100.0 32 ............................. TGCATGCCATTCACGCGGACGTTGACGCTCGC 316454 29 100.0 32 ............................. GAAGCGGTCCGGCTATCCCAAGAACTCATCAA 316515 29 100.0 33 ............................. TGCATAGGGGACGTCCTCCGGCTGAGGGGGGGG 316577 29 100.0 32 ............................. GCGAGCGGGGTCGAGGACCAGGCCGCCCTGGT 316638 29 100.0 32 ............................. GAGCGAGAGGGCCGGGGGTTCCCGCCCCCGAC 316699 29 100.0 32 ............................. GTCCGCTGAGGAGCCGATGCGGACCCAGACCG 316760 29 100.0 32 ............................. GCCCCGGAGAAGACGCGGGACAGCGTGTACCT 316821 29 100.0 32 ............................. ACCCAGTAGCCGCGGTTCCGGGACTGCGGTAC 316882 29 100.0 32 ............................. GAACGCGAGCGGATCGCCGCGGCGATCGCCGG 316943 29 100.0 32 ............................. CCGAGCAAGAAGGACCGGGCCTGGCTCCACGA 317004 29 89.7 0 .............C...A..........T | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 CTGCTCCCCGCACACGCGGGGATGGTCCC # Left flank : CGGCATCAACCACGACGGCCCCGAGGACTACGGAGACGAACTCTGGTGACCGTCATCGTCCTCACCAACTGCCCAGCCGGACTACGCGGTTTCCTCACCCGCTGGCTACTGGAGATCTCCGCCGGCGTCTTCGTCGGCAACCCCTCCGCCCGGGTCCGCGACGCCCTCTGGCAAGAGGTCCAGCAGTACGCAGACCAAGGCCGCGCCCTACTCGCCCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACACCTGGCACCCGACCGACCACGAAGGCATCACCCTCATCCACCGCCCCGACCCAAACGCGCCGCCCCCCGGGCAAGCCCCAGCAGGCGGACCACGCCCCGGCTGGAGCAGAGCCGGCAGACGCCGCCGCTTCGGAAGAGGCTAAAGCACACCATGCAAGATATGCACGATTTGCCGGAATCAACGAAAGTACTCGAAAACCGCTCCCTGCGCCCATAAACCCGCAGGTCACCCAGT # Right flank : TGCCCCTGTTCTGCGCCCTCACATACCTGTTGCGCGACACGCAAGTTCATCGAGGCAGGGCCCCACCCCCGGCCCGAGGGCTGGTCCACTCGCACCACACCACCTTGCCCGGCGACCGTTCCGCCACTCCCCATTTGTCGGCCAGCTCCGACACCAGCAGCAGCCCGCGCCCGCTCTCGTCCGACCGGTCGGGGGCCTGAGGTACGGCCGGTACCCCGTCCCCGCTGTCGTGGACCTCGACGCGCACACCGTCCCCGCAGGGGAGCAGCCGCAGCAGAAAGCCCCTGCCAGGTGGTGCGCCGTGCACCAGGGCGTTGGTCGCCAGTTCACTGACGCACAGCGCCACGTCGTCCGCGCGCTCACGCACACCCCAGTCGGCGAGCACCTCGTGCGCGAACGCCCGCGCAGCTGGGACGGACCGGCGCTCTCGGCGGTAGAAGCGCTCACGTGGGGAGAGGGGTGGAGTTTCGTTGTTCACGTGACGAGGGTCACGCTCCGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //