Array 1 8102-7533 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAAD01000245.1 Pseudomonas aeruginosa strain HUM-311-D2 PA2_A6_NODE_212_length_8232_cov_27.8411_ID_423, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8101 28 96.4 32 .............C.............. TTGAGGCGGCGCTCAACCGCCTAGGCTTCTAT 8041 28 96.4 32 .............C.............. ATGCTGAGCGAGCAGGCATAGCCACCCATCGC 7981 28 96.4 32 .............C.............. ATTTCGCAGCCAGAGTGGCAAGACCATATCCA 7921 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 7860 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 7800 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 7740 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 7680 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 7620 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 7560 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25079-25946 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAAD01000178.1 Pseudomonas aeruginosa strain HUM-311-D2 PA2_A6_NODE_40_length_36010_cov_21.1562_ID_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25079 28 100.0 32 ............................ ATGTAGCCGAGTGCGCTGCGACCGGCTTCGTA 25139 28 100.0 32 ............................ TGGCGACGTCCACTCGATGCTGCTGATGATTC 25199 28 100.0 32 ............................ ACGACCGCAAGACGCGGACCGATGGGGGTGCA 25259 28 100.0 32 ............................ AGCTTCCGGGCCGATGTTGCCGACCGTGGTAT 25319 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 25379 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 25439 28 100.0 32 ............................ CAGCGCAACAGGCGCATAAGTTCGTTGTAGTG 25499 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 25559 28 100.0 32 ............................ AAGCTCGCGCGGGCCTACGAGCAACACGCCAA 25619 28 100.0 32 ............................ GTAGTGCCGCCAGCACAGCGCCTCGACGGTGT 25679 28 100.0 32 ............................ AAAGAGGCTGCGCAGCACCGACGCACCTTCGT 25739 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 25799 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 25859 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 25919 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCATGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35880-34471 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAAD01000178.1 Pseudomonas aeruginosa strain HUM-311-D2 PA2_A6_NODE_40_length_36010_cov_21.1562_ID_79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35879 28 100.0 32 ............................ AGTCGGGCTGTTGAGTCTTTCCGCTAAAGCAT 35819 28 100.0 32 ............................ AAGAGAACGACTGCTGAATCAGCATGGTCATG 35759 28 100.0 32 ............................ CTGGCCAATGTCGATGCCCTCGCAGTGCAGGT 35699 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 35639 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 35579 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 35519 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 35459 28 100.0 32 ............................ ATCAGCAACAACGGTCACGCGGGTTCCCTGCT 35399 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 35339 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 35279 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 35219 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 35158 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 35098 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 35038 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 34978 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 34918 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 34858 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 34798 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 34738 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 34678 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 34618 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 34558 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 34498 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //