Array 1 1204196-1208192 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051175.1 Ralstonia solanacearum strain Rs5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1204196 29 100.0 32 ............................. CCGTGTTCGTCTGCCGAGGTCGGCAGCACGTC 1204257 29 100.0 32 ............................. GGAGTCGCAGAATCGCCGCCCGTCTTCGGTAG 1204318 29 100.0 32 ............................. ACCCGGCTGAGTGGCCGGGCCTTGCTGTGTGT 1204379 29 100.0 32 ............................. CTGGCGGAGCGAGATTTTCCGCTGTGCCATAA 1204440 29 100.0 32 ............................. CGTGGCACGGTAATGTACCTGGATGCCATGGA 1204501 29 100.0 32 ............................. CGCATTGCCACTGAGGCTGTACTGATCATCGC 1204562 29 100.0 33 ............................. CTGGCCGCATCGGGCGACTACTCGAATCTGGCC 1204624 29 100.0 32 ............................. TCTGCTCATGATCGTCTCCCCTCATCAGTAGC 1204685 29 100.0 32 ............................. ATGGCCGAAATCTCGTTTTCGCCTTCATTATC 1204746 29 100.0 32 ............................. CAGTTGGCCGGTCCCATTTACTGCCTTCGCAA 1204807 29 100.0 32 ............................. ATATTCCTGTTGATGTGGTCAATCTGCATTCC 1204868 29 100.0 32 ............................. CAACCGCGCTCGAACATGCGCTGGCGCGGCAA 1204929 29 100.0 32 ............................. ACCGCGGACGCTGAGTAACCGCCACCACTGAA 1204990 29 100.0 32 ............................. CATGAGCCGAATTCTTGCCATTGACCCAGGAA 1205051 29 100.0 32 ............................. AGTGAGCCTAAAGGAGAACAGGTCTCTCCAAT 1205112 29 100.0 32 ............................. GCCCGAAACCGGAACCGGTGCGCGTCAATGGC 1205173 29 100.0 32 ............................. TCCCCGGTGGACATCCTGGCCGGACTGATCGG 1205234 29 100.0 32 ............................. GCGTCTGGATGTACCAAGCGGCCATACCGGAC 1205295 29 100.0 32 ............................. CCGCTCACCGCGTCGAGATCGGCTTCCGACTC 1205356 29 100.0 32 ............................. ACCTGACGGCGAAGGACAAGGGGCAGATGAGC 1205417 29 100.0 32 ............................. TTCGCTCAAAATCCGGACGAGTTCCGGGACTA 1205478 29 96.6 32 ............................T GGACATGGGCGTCTCCGGGTGGGTGCATCCTC 1205539 29 100.0 32 ............................. GATACCGACGCGGTGAGCACCTTCCTGGGAGA 1205600 29 100.0 32 ............................. CCAAGGCAACGTCTATACCACAGTGGTCTCCT 1205661 29 100.0 33 ............................. TTGCCCGGATCGGTGTGTTCGTTCGGATCCTGC 1205723 29 100.0 32 ............................. TCGCCCGCATCCGAGGTGAGAAATACTACTAC 1205784 29 100.0 32 ............................. CTTCCCGGCGCAGATTGTTCGCGCGATGCTTA 1205845 29 100.0 32 ............................. CCCATATGGGTGTTCGTCGATCAGGCCCAGCA 1205906 29 100.0 32 ............................. CCCGCACAAAAAACCCGCCTTCGTGGCGGGTT 1205967 29 100.0 32 ............................. CGACGCCATCGCGGAAGCTTTCGAGCGTGGAT 1206028 29 100.0 32 ............................. TCCTGCTAAGAAAAAAACAACAGCCCCATCAG 1206089 29 100.0 32 ............................. CGGGCGGGCACGGCAATGAGAATACAGGCACA 1206150 29 100.0 32 ............................. TGGTTGATGTATTCCTTCAGTTCGGTGCCCTT 1206211 29 100.0 32 ............................. CTGGCGACGTGCGGCGATCTGTACCGCGAATT 1206272 29 100.0 32 ............................. ACCCCCTGGTTTGGATTGAACGCAAATACCTC 1206333 29 100.0 32 ............................. ATCCAATGGACAACGCCGTAGCAGCATGCGCA 1206394 29 100.0 32 ............................. GCGAAACCGTCACCGTTTCGCATGGGCGCGTC 1206455 29 100.0 32 ............................. ACTGATTGGTTTCCAAGCGTCACTAGACCTGT 1206516 29 100.0 32 ............................. CTCTGGGTATCGTTAGTTGCCATGTCGCGCCT 1206577 29 100.0 32 ............................. GCCATGAAGGAAGTCGAGTCGACTTGGATCAA 1206638 29 100.0 32 ............................. CGCACGCCCGGCATCAACTCCTCCAGCATCTG 1206699 29 100.0 32 ............................. GTTTAGGACCGTCTAATCCGCCGCTCGATGAA 1206760 29 100.0 32 ............................. GCCTGGAGTTGTGTGCTCAATTGTGTGCCTTG 1206821 29 100.0 32 ............................. CACGTTTGTGGCCCGATACGATTGTCAACGTG 1206882 29 100.0 32 ............................. CCTCCAAAGAAACGCGCGACGCCTACAAACAA 1206943 29 100.0 32 ............................. CGGGTGCCGTTGGACGAGGTCAGGGTGTACGC 1207004 29 100.0 32 ............................. AATGACAATGAAATGTTTGCGTTTCGGTTCCA 1207065 29 100.0 32 ............................. GAGTAGGGTCAATATGGACGGCGAAACTATCA 1207126 29 100.0 32 ............................. TGCGGTCCCACCGATCGTCAGTTTATCTCCGA 1207187 29 100.0 32 ............................. CACGGGCCGAAGTGCGTTCCGATCTTTCTGGA 1207248 29 100.0 32 ............................. GCCCAGGATGCCACCAATGAGCGTGACATCTT 1207309 29 100.0 32 ............................. CAATTTCGCATCCTCAGGCGCGATCGCCAATT 1207370 29 100.0 32 ............................. CGCGCGCAACGTATGGCGAACATGACACCACC 1207431 29 100.0 32 ............................. ACCCTCCAGTTTGGTCACAACTACAGTAAGAA 1207492 29 100.0 32 ............................. AATCGCCACGCCGACAATCGCAGTTGCAACCG 1207553 29 96.6 33 ............................A GTTGTGAGTCTTCAGTTCAGCCACCTGCTTTTC 1207615 29 100.0 32 ............................. ATATTCGTGAAATTGGCGGATTGCAATGCCCA 1207676 29 100.0 32 ............................. GTTTAGGTCCGTCTAATCCGCCGCTCGATGAA 1207737 29 96.6 32 ............................T GCGCGCAGCATTTCATCGCTGGCGTTTTCGTG 1207798 29 100.0 32 ............................. CCAGTGTCGGATGCGTTTCTTGTGTTGATTAT 1207859 29 100.0 32 ............................. GATTGACATTCTATGCCGCATATTATGATTGG 1207920 29 100.0 32 ............................. ACACTTACGAGGCTGAGCCTGAATACGCGCTG 1207981 29 100.0 32 ............................. CCACCCCGGTGTAGGGGGTAACGTATGAAACC 1208042 29 100.0 32 ............................. AACGCGGGTCCAAAGGAATGCAATGGCAATGA 1208103 29 100.0 32 ............................. CAGGTGTGGGCTCTGAAAATCAAGGACGTCGC 1208164 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 66 29 99.8 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGTATTCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACGATCGTGCAGTACCTGCAGTTCGCACGCGACTTCAACAAGCTGTTCCCGGGCTTCGAAACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGGTAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGGGCCGATTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : GCTGCATCAACAGCTCACCGCTGATCGTGCCGCGACCCCCGCATGTGCGGAATAAGCCTTCAGTCAGCCCCAGTTCCTCGATCATCTGTAGGAAGATGAAGAAAGCCACGGATTAATGCCTTCCACTATCTCATTTGGATAGTCTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTACGATCGCCCGTCGGGGAGCAGGCACAGATAGACATTTCCTGACATCAAGAAAAGGCATCCGGCTGACATGGAAAAAGGGGCGGCGCAATACTTTGCCTATTGGGGCAAGGCACGCATGCAGGAAGGTAGCAGTCAGCTTTATCACCTTCTTGTCTTTCATGCCTTGGATGTCGCAGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGGTTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1217615-1220879 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051175.1 Ralstonia solanacearum strain Rs5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1217615 29 100.0 32 ............................. ATGCCGGTGGGGATGCGGTTCACCATGGGCAC 1217676 29 100.0 32 ............................. CCGCGCGACGCCGCCCAGTCCGGCCAGCGGGA 1217737 29 100.0 32 ............................. TTGCCGCCTCAGGTCGGCCTCGTCATGCTCGA 1217798 29 100.0 32 ............................. CGGCGAGATGCGCGAGAATTCCGAATGGCACC 1217859 29 100.0 32 ............................. AAGGGCGCCGACGTGCCATCTTACCTTGCGCA 1217920 29 100.0 32 ............................. CGGCGCGAGCGGCCGAAGGAGTCGACGTGATG 1217981 29 100.0 32 ............................. CTGCCTTGGCTCCGATTCTGGACGCTGCTCCT 1218042 29 96.6 32 .......T..................... TTATTGCTGAGAGGAATAGGGTGCATGGGCTG 1218103 29 96.6 32 ....................T........ ACCACGAATGGCGCGGTATCAATCTGGGTACA 1218164 29 100.0 32 ............................. TTGGGCATGCGTGCCTCGCACACCTGCGACCA 1218225 29 100.0 32 ............................. GCTTCTTTTTCCGTCCCACGGAACAGTTCAGG 1218286 29 100.0 32 ............................. GGCTCGGTCTATGGCCCGGCCACTGGCCCGCG 1218347 29 100.0 32 ............................. ATCGCTTCGGGCGCGGCGGTAGCCCAGTTCAC 1218408 29 100.0 32 ............................. CCATGTTGCTCTCCGGTTGCATGGATGGATCG 1218469 29 100.0 32 ............................. CAACCCGATGAATACCAGGACGAGAGGCATAT 1218530 29 96.6 32 ............................A ACGTGGCACCGGCGGCGTCTATTTCGGCCCCC 1218591 29 100.0 32 ............................. ACTTGTTTTGGTGAAAAAATTGAGCGCGATGA 1218652 29 100.0 32 ............................. TTGGCTGCCTGAACACCTAGGCGCCACGCCGG 1218713 29 100.0 32 ............................. AGCCCTTTATTACTTAGAACCATCACGATAAT 1218774 29 100.0 32 ............................. TCACCTGGCATGGAATTTGCCGGAGGGCACAT 1218835 29 100.0 32 ............................. AGGCATTGAAAAAAGATCGCAAAACAATGGGC 1218896 29 100.0 32 ............................. CACATGTTCACGCGCTGACTGTCAAGATGGAA 1218957 29 100.0 32 ............................. AACGGTCCGTGCAGCCCCTGTGATGGAAGCTG 1219018 29 100.0 32 ............................. AACCCGATCAGCGGCAACAAGGCAATCCCGAA 1219079 29 100.0 32 ............................. TGTTCGGCAAACTGACCGCGATCAACTACGTC 1219140 29 100.0 32 ............................. AGTAGTAAAGGTGTACGCATGTCGGTACGTGT 1219201 29 100.0 32 ............................. TTTGTCTTGACTATCGACGAGGCATAACTGGA 1219262 29 100.0 33 ............................. CGGGCGCATCCTGGCGATAGAGAATTTCCCCGC 1219324 29 100.0 32 ............................. ACGAACGGCATATCAAATCCCAATCACTTGCA 1219385 29 100.0 32 ............................. CCGGTCATCAAGCCGCAACAAAATGACGCGCT 1219446 29 100.0 32 ............................. TCTGGTGGATACCGGCCAATTGATGGACGCCG 1219507 29 100.0 32 ............................. GAAATCCCGGAAATTCGAATAGGCGACGGGGA 1219568 29 100.0 32 ............................. GCGTTGTATATGTCCCTAAACTCAGCGAGAAC 1219629 29 100.0 32 ............................. GCGTGTACCCGCTGTTCATCCCCAATCCACCC 1219690 29 100.0 32 ............................. TTCATGGAACCAAGGCCACTCGCACCACCGGT 1219751 29 100.0 32 ............................. TTGTCGCGGTTTTCTTTCGATGTCCAACTCAT 1219812 29 100.0 32 ............................. AAAGTCCAGCAATTGTTCAGTGCAATTGTCGC 1219873 29 100.0 32 ............................. TTCAGGCCGTTCTACTACGGCGGACGGGTTCA 1219934 29 100.0 32 ............................. CCTCACTAGGCATCCACGGCGCTTCCATGACC 1219995 29 100.0 32 ............................. GTGGTGAAGCCCGGCGTGGCCCTCACGGATGC 1220056 29 100.0 32 ............................. ACATAACGATCGACTGTCCCATTATCCCAATC 1220117 29 100.0 32 ............................. GCGCTGGCCTGAGTCTCAGCCTGCTTGGCCTC 1220178 29 100.0 33 ............................. TGGCCGTGGGGCTAGGAACGGCATTGCCACTGC 1220240 29 100.0 32 ............................. CCCGAGAAACGCGAACCGCGCGCGCCCAAGCC 1220301 29 100.0 32 ............................. CCATGATCGCCCTGCTCGTTATCATCGCACTG 1220362 29 100.0 32 ............................. AATGCGGCCATTGACAATGCGCAATTGTCCGC 1220423 29 100.0 32 ............................. CACTACGCCGCGTTTGAGCAGGCGGGCCTGGA 1220484 29 100.0 32 ............................. CTGCGTGCTCAATTGCGTGCCTTGTTGGGTTG 1220545 29 100.0 32 ............................. GCTGCGCTGGCCGAGAAGGGCGTGGAAATCCC 1220606 29 96.6 32 ............................A ACTGGCAAGTGGGCGCAACCGTGAAGGTTGGC 1220667 29 100.0 32 ............................. ACTGCCGAGACGAACGAGACGGTGGAATTCGA 1220728 29 100.0 32 ............................. AAGCGGTATTCGGTCGAAGGCCCGGTGGAATT 1220789 29 86.2 32 ............TGC..A........... GCCACCAAGACGGCGAGTGAGGATATGCGAAT 1220850 29 86.2 0 ...........AT...........TG... | G [1220867] ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.2 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTTGCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCTGTGCCGCCCGCCATTCCCAATGCCGAGGGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTCCGCGCCGGCGTATACATCGGCGATGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAACCGCCGCCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGTGGCGGGATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : GCCAGTGGCCAGGCAGCCGATGTCACGACCCGGATGCCGCTACACGCTAGTGCCGGCTTGACCGCGCCTTTTAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCGTCCGGGCCGCTGGCTGCGACGCGACATCGCCGCTGGGCTGGATCAGGCCGCCAGCGCGGCACGCGCAGCGGCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACGTCGTCGCTGATCAGGTCCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGTTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //