Array 1 440119-441062 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026986.1 Pectobacterium parmentieri strain IFB5623 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440119 29 100.0 32 ............................. CCGATTCAAGGGCAGATGCGCGGTCTATTGTT 440180 29 100.0 32 ............................. CATTTCAGACCCGAATTTAAGAGCCGCTTGGT 440241 29 100.0 32 ............................. TTGTATGCAATTAGCGACCCGTAAAACCCGCC 440302 29 100.0 32 ............................. GGCTTCACATGGCACAAAACAAATCGGCGCAA 440363 29 100.0 32 ............................. TAAAACGAAATGGAATACAAGGAAATGGGATG 440424 29 100.0 32 ............................. GATGAGCAAATGGAAACGATCAACTATAACGG 440485 29 100.0 32 ............................. AATTACCAGATGAGGCGTATGAGTATGGGGAT 440546 29 100.0 32 ............................. ACGTAAAGCCGCACAGGCACCTCGCCGGGAAG 440607 29 100.0 32 ............................. TCGTCGATTCAATGAAGGCGTATGGCGGAATC 440668 29 100.0 32 ............................. GATTGCGTCAGCGCCGTCAGAAAATGCCTTTG 440729 29 100.0 32 ............................. AGGTGTACCGCACCGCTCTGGAGCAGTCTGGT 440790 29 100.0 32 ............................. TTATTTAGTGGAATTCGGCCTGACGCCAGCGG 440851 29 100.0 32 ............................. CCAATGGCACCGGGGATAGATGTAATATCAGA 440912 29 100.0 32 ............................. CCACTCTGCGCCGCATTGGTGCTAATACAGAT 440973 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 441034 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGAGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGTCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGCGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 442932-443204 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026986.1 Pectobacterium parmentieri strain IFB5623 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 442932 29 100.0 32 ............................. CATGGATAAGAGCGACGTAGGAACGCAATTTG 442993 29 100.0 32 ............................. CTATCGTTTGCGAACGTGCATCCTTGCCCGTA 443054 29 100.0 32 ............................. CGTTACTACGCAGTGATGGGAATATTTCTGGC 443115 29 100.0 32 ............................. GAGAAAGAGCGCGAGCTAAAAGAGTTGCGCAC 443176 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGGTCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTGTTATAAAACAAACCTCTACTTTTAGG # Right flank : GTACCACGCGGGATTCATCTTTAATCCGACTGAGTGTTCCCCGCGCGGGGTCAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3935405-3935673 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026986.1 Pectobacterium parmentieri strain IFB5623 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3935405 28 100.0 32 ............................ AACATCGCCACGGCGAAAAGTGTGTTCATGGC 3935465 28 100.0 32 ............................ TCAACTCTGCCCGTTGCTGCTGTCGGCGGGTA 3935525 28 100.0 32 ............................ ATCTACGAAGCTGATTATTGGTATGGGCCGCG 3935585 28 100.0 32 ............................ TCAGAAGAAATTCCGTAGTCTGTTGAGAATGT 3935645 28 89.3 0 ............GC..........A... | G [3935671] ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTCCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3952901-3955573 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026986.1 Pectobacterium parmentieri strain IFB5623 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3952901 28 96.4 32 .............C.............. AGCCACGCATCCAGATACATCGGGCAGTCAGG 3952961 28 96.4 32 .............C.............. CAGATCACGGCGGTTTTGTTCTTGCGCCATGT 3953021 28 96.4 32 .............C.............. AATTCCACTGGAAAAACTGACAGCATTTACAA 3953081 28 96.4 32 .............C.............. TAGCGTTAGAGCCGGGACTCATCTCGTTTTAC 3953141 28 96.4 32 .............C.............. CGTCATCAACATCTACGCCGACGGTTCATTTA 3953201 28 96.4 32 .............C.............. TTGCCCAGCAACTTTATAGCCAGTTGAGTAGA 3953261 28 96.4 32 .............C.............. CGTTTGCGGATTTTTTCATTGCATCGCTGACA 3953321 28 96.4 32 .............C.............. GTCCGGACGGCAATCATTTTAGCATCGAGCAC 3953381 28 96.4 32 .............C.............. ACGCCGGTGCTGTGGCTGAAAGACGTCCTGAT 3953441 28 96.4 32 .............C.............. AGGCGGTTGAAATCTGGCTGCGTCGCAGGGGA 3953501 28 96.4 33 .............C.............. CCAGGGCAGGAGGGAGATGAAACACGCAAGGGA 3953562 28 96.4 32 .............C.............. TGCTAACGCGGAAATTTGACCGAATGAGGGGG 3953622 28 96.4 32 .............C.............. ACTAGCGCCGCCCGGCTTGCTTGCCATGCTTC 3953682 28 96.4 32 .............C.............. GATTGACATACGCACAGGCTGTTTACTGGATT 3953742 28 96.4 33 .............C.............. CACCGACAGACAGATTATCCGGCAGACTGGTGA 3953803 28 96.4 32 .............C.............. ACGAAACAATAAACCCATTAATGGTATAAGTT 3953863 28 96.4 32 .............C.............. CATGTCATTTTCACCTGAGCGTTAGCATTGTT 3953923 28 100.0 32 ............................ TACGCGATGACGCTGCCCGATAGTGCCGCGTT 3953983 28 100.0 32 ............................ GAGACGTACAAGCCCCAGCTTCAGGAGGGTAG 3954043 28 100.0 32 ............................ GCTGCGACGCCTCGGCAGCCGACACCCGCATC 3954103 28 100.0 32 ............................ GAAGTCACGCTGGAGTTTGACGATCTGCCCGA 3954163 28 100.0 32 ............................ AGCTTGTGCGCGATGGCATAGCGGGCAATCTC 3954223 28 100.0 32 ............................ GAGCGGGTGATCGTCAAAGAGGTAGACAAGGC 3954283 28 100.0 32 ............................ GCAGATACGAATACCAACTTGACCCACTACTA 3954343 28 100.0 33 ............................ CCCCTTCCCCCGACCTAATCTGTCATTTCTAAG 3954404 28 100.0 32 ............................ AAGGTGCCGAGCCTCTTGACCGATAATGACTT 3954464 28 100.0 32 ............................ CGCTAACGTGGGGAAATATGACTCAGTCGTCC 3954524 28 100.0 32 ............................ AATCCCATAAAACAAAAGCCCCTGCATTTCTG 3954584 28 100.0 32 ............................ AGTGAATACCACGCCACCGACAGGTGGTTTTT 3954644 28 100.0 32 ............................ TAGGCGCTTGCTGGCATCCGGCACGTTAAATA 3954704 28 100.0 32 ............................ TTCAATTCGCCGACTTATTAGAGCTAACGGAA 3954764 28 100.0 32 ............................ AATATTAATACAGGACAACCGACATATATCAA 3954824 28 100.0 32 ............................ TGTGATGTAATAACTGAGTCCGGTCACGGCGA 3954884 28 100.0 32 ............................ AGATACCGAGCCCCTTGACTGCAATTTAGTGC 3954944 28 100.0 32 ............................ AGAAATACCCTATGTCATTCTGGATAAATCAA 3955004 28 100.0 32 ............................ CTGGTCGAATAGCAGGGATAACCGGCAATGTC 3955064 28 100.0 32 ............................ AGACAAAGATTATTGCCTGATATTCGATCACT 3955124 28 100.0 32 ............................ GCGTGCAGTTCGCCAGCGCCGCCCTTGCAACC 3955184 28 96.4 32 .............C.............. CAAATCGGCGTTCGACTCCCACGCATCGGTTT 3955244 28 100.0 32 ............................ ATAAAATCCGCCAGTTGGGTAGACAGGCGGCG 3955304 28 100.0 32 ............................ TGTACTCACGCCCACGATCATCATTGTACAAA 3955364 28 96.4 34 .............C.............. GGCGCGACCGTGTTCTAGACGATTTACGGGACAC 3955426 28 96.4 32 .............C.............. TCTAGCCAGTTATGAATTTCAACCGACTTTGA 3955486 28 96.4 32 .............C.............. GGCGTTGTCAGCGTAATGTTTCCGCTTCCCGT 3955546 28 75.0 0 ............GC......T.C..TGT | ========== ====== ====== ====== ============================ ================================== ================== 45 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATATCTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAACTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGTGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //