Array 1 4118878-4120765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033835.1 Pseudomonas aeruginosa strain FDAARGOS_570 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4118878 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 4118938 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 4118998 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 4119058 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 4119118 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 4119178 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 4119238 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 4119298 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 4119358 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 4119418 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 4119478 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 4119538 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 4119598 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 4119658 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 4119718 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 4119778 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 4119838 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 4119898 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 4119958 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 4120018 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 4120078 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 4120138 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 4120198 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 4120258 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 4120318 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 4120378 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 4120438 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 4120498 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 4120558 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 4120618 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 4120678 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 4120738 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4130038-4129290 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033835.1 Pseudomonas aeruginosa strain FDAARGOS_570 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4130037 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 4129977 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 4129917 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 4129857 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 4129797 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 4129737 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 4129677 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 4129617 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 4129557 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 4129497 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 4129437 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 4129377 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 4129317 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //