Array 1 161810-162509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYDC01000016.1 Secundilactobacillus collinoides strain 237 contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 161810 28 100.0 33 ............................ TCAAAAAAGGAGGTAACATTTATGAAATTTTCA 161871 28 100.0 33 ............................ CTTTGTTGTGTTTATCCCAAGCAATTTCTTTAA 161932 28 100.0 33 ............................ CATATGACGATTTTTGCTGGAGTTGTAACCGCA 161993 28 96.4 32 .........................C.. GTCACATTCATGCTCGATAGCTGGGATATTGT 162053 28 100.0 33 ............................ CAGTCAGGAAGACCTGAGTAATGCAATCTTGCT 162114 28 100.0 33 ............................ CTACAACGTGTACGCCAGTGCTAAAGACGCTGG 162175 28 100.0 33 ............................ CGGAAGCCAGTCAACGGGTTGCCTTGGGTTTTC 162236 28 100.0 33 ............................ TGAGTTTAACAAGCATGTACAAGCGCTGGAAGA 162297 28 100.0 33 ............................ TTCCAGCCGAAAATTCCCAATTTCTGATTTTCA 162358 28 100.0 33 ............................ TATCTTCTCCGGCTTTGCCCGTCACAAGCTCAC 162419 28 100.0 33 ............................ TAAGCGTCCGAATATGAATCGGGGATAAAGACC 162480 28 78.6 0 .......T....CA..T..A..A..... | A,A [162504,162507] ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.9 33 GTATTCCCCGCATGTGCGGGGGTGATCC # Left flank : TTGTAAATAATGACATCAGCATCGCTGACGATTTTGGCTGTTTTCGTTGTGGCTTCGTATTCGTGTGGATCCATGCTGGGGGAGTTGATGATAGATTTTACTGTACCCTTGTCACCGAGGACGGCTTTGGCGGTCTCACCGTAGAAGTCTAAGGAAGTGACTACATGGATTTTGTGAGTTGCTGCAGAACGAGTTGTCGATTTGGTGTTTGTGCAACCTGTCAGTACAATTAATAGGAATAGACTTGCAAAAACGAATAAAAAACGAGTGATGTGATGTTGACGAATAGTCAAAATCAAGCCCCCAAGTTAAAAAGTAATTGTTACGCTTAGACTTTCATCTTCGCAGATTTTAACGCGAATTGCAATTGCGTTTTTATTTTCCTAGTTTAATTGCAACAAGTACATTAGAATCTTAATTGGGTGATCATTTGGTGACCAAGTCATAAAAAAACGCGTTTTGCTGATTTTGAAATGTTGATTTGATGGGATTTGTTTAGT # Right flank : CAAAGAAACGATATCATGCGTTTCGATTGAATTTTTTTGTAGACAATTTATTTTGTATCACAAAATAATAAGAAACCATGCAAAGTCTACACTTGACAATGCATGCGTTTTTTGTTTTACATACGGTGAACATGAAAAAAATTAAAAAACAAAAATAATTCTATGCATAAAAACGTTTTTAAATTAATATAAGGATAAGTGATTTTTTATATGTGTAGACAGTTGATTCTGTAGGGGGATTCACTGTCGAAAAAACGTATAAAAAATATAAAACTAGAGAGGATTGATAACGTAGATACATGTATCGGGAATAAAGGAGTGTGATAGTTCTGGTTACTTTAACGAATCAAGCGACAAGTCTTTGGGCTAAAAAACGGTCTGAGGATGGTGAGCATTACTGGTTACCACTAATTACTCATCTCAGTGATACACAGAGTACGATAAATTGGCTTTTTAATCATTGGTTTAGTCCTGGGCAAAGACAATTATTAACGCAACGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCATGTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 172311-173926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYDC01000016.1 Secundilactobacillus collinoides strain 237 contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 172311 28 100.0 33 ............................ CTGCTGATTGCCAGCACGGGGATGTGATGACGG 172372 28 100.0 33 ............................ TATCAGTATATAACATTGTTTCGGGGGTTTGTG 172433 28 100.0 33 ............................ TACAGGTGCTTCCGCCGCCCAGAACACAGCGGC 172494 28 100.0 33 ............................ TCAGCCCATCGCACACGTGCTCAGCTGTTTGAT 172555 28 100.0 33 ............................ CGCCAGCGGGACAGCGATTAAAATGCTGTACAG 172616 28 100.0 33 ............................ CTCACCAGCTGTCAATTTGAGTTTCCGTGTGAC 172677 28 100.0 33 ............................ CTGCCAGCGACCGTTGCAGAAACGTGATGAGGT 172738 28 100.0 33 ............................ TTTCATTTGGCGTTGCAGTGGTTGTCGCGGGGC 172799 28 100.0 33 ............................ ATCAGAAAGCCGGTGCCGATGGTGACTAAGAGA 172860 28 100.0 33 ............................ TATATAAAGTGTCGAAAGGGACAAGGAAACAAA 172921 28 96.4 33 .....T...................... CTATTAGGCTGTGCCTTTGCTGTGGCTGAAATG 172982 28 100.0 33 ............................ CTGCTGACACGGCTGATGGAAGCCAAGCAAGCT 173043 28 96.4 33 ..................A......... CCATGCCAGAATCGACACGATCCAAATCACTTA 173104 28 100.0 33 ............................ CAAGAGCCTAGAATTTAGCAAACCATCAGATAA 173165 28 100.0 33 ............................ TCTAACCGCTTAAAACTGTGTCTACCCATTTTG 173226 28 100.0 33 ............................ TATGCACGACACACGCACACGTATTTCAACGTT 173287 28 100.0 33 ............................ CTGAGCAACATTCATTTCGTCCCGATACAGGGC 173348 28 100.0 33 ............................ TCGATCAAGGACGATGGCTTTACTATGCCAGTG 173409 28 100.0 33 ............................ CATTTCGACCGATATTGCCTGTGTCACCATCGA 173470 28 100.0 33 ............................ TGCCTTGCGTATACAAAGTCGCGTTTGAGAAAT 173531 28 100.0 33 ............................ TACACCTATCTTGATGCTGTGGAAGCTGACTTT 173592 28 100.0 33 ............................ CATCGCCGATAGTGGTAGTGTCATTGTCTTTAG 173653 28 100.0 33 ............................ TTAACAATCGAACCACCATTGACTGATAAGCCT 173714 28 96.4 33 ........T................... CCGACGTATCACGAGCTCGTGGTGGCGTCTCGT 173775 28 100.0 33 ............................ TGATTGAGTGACCTTGGTCGACTTAGTGACAGG 173836 28 100.0 34 ............................ CATGCAGCAGAATGCGTCTCACATTACCCCTATA 173898 27 82.1 0 .....................A..GGT- | T,T [173904,173920] Deletion [173925] ========== ====== ====== ====== ============================ ================================== ================== 27 28 98.9 33 GTATTCCCCGCACATGCGGGGGTGATCC # Left flank : GTTGCTACAGATAACATAATAGCGATTGGTGCTGTCAAATCGTCCGGTATTGCTGTTGAAAAATTTTATCAACTGATTAACATCAATCAAAAAATTCCGGCAGCCATAACAAAGTTAACGACTTTAACGTCAGAACAATTGATTTCTGAGGGTATACCTTTAGAAGATGCCCTAAGTGGACTTCAAAAATTTATTGGTGACTCACCTCTGATTGGATACAACGTTCATTTTGACGAAAGTTTCTTAACGGCAAGCTTTCGAAAAACTAGGTTGTCAATTTTGGCCAATCATTTTTATGATTTGATGCCCGTTGTGAAAAAGAATAACCAATTTTTAGATAATTACCGGTTAAAAACAGTGTTGGAAACATATAAAATTAAAAATGAACATCCACATAATGCATTGGCGGATGCTCAAGCAACTTATGAGTTAGCAGAGCAACTCATAAAAAAACGGGTTTTGCGATTTTAAGAATGCTGCTATAGTGGGATTTGTTTAGT # Right flank : TGGCAAGGTTAAGCTTGATAGTCATCCGAGTGTTTTCTGTTATGTTCGGTGTTGTTGCTGATGTAGTATTCATTAATACCTACAGTGGTTAAAAGAGTGAGATGGTTGTGAAAAAATCTGACCTTTATTTAATGCTCTAAGTAACTGTTAGTATCGATAAGAGATAAAAGTTCATTATATTGAAATATTTAAATCGTTTCCGGATTTTTTACCATCAAAATAGAGACGAATCAATACGTACTAGTATGATTGAGGCATCTTATAACAATTGGTCATAGATTAATATTAACTTTTATATATAAATTAATTCTAATAGATGATAAGCTAATATATAAGAAATAAAACCCACAAAAATAATTGAGATGACAAACATTGACACCAAATAAAGAATTTGAGTATACAAAATTAAAGTTAGGAAAATACGGAATGCCAACTTGGGATGGTTTAATTGGCGTAACGATTGAATTAGCGCTAACACAGAAAGAATGGAAATCAAAGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 54210-54786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYDC01000003.1 Secundilactobacillus collinoides strain 237 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54210 28 100.0 33 ............................ CGGCCACCAGCCACAAAACTACTTAGGACAAGT 54271 28 100.0 33 ............................ TAGGCGCACTTCTGGGAACAAGCCTTAGATTGT 54332 28 100.0 33 ............................ CCGCGGGCACTTCCCGAAAGCGTGCTCACATGA 54393 28 100.0 33 ............................ CATAAACTTTCCTGTGGTGGTACTGGTATCGAC 54454 28 100.0 33 ............................ CCTGTGGTAGTTTTCACGCTTCCGAGAAAAAGG 54515 28 100.0 33 ............................ CGCCAAACGTCACTACTTCAACATCGGATACGA 54576 28 100.0 33 ............................ TATGACTGGATTTGGGAAAAGCCTAAAGCTTCC 54637 28 100.0 33 ............................ TAATCTTGTCGCCAACACCGTTTAAAGCCTGCA 54698 28 96.4 33 ...........................T GATCATCGGTGCCTTGACGATACCTGGTGCGTA 54759 28 82.1 0 ..........TA.A.........A.C.. | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.8 33 GTATTCCCCGCGTGTGCGGGGGTGATCC # Left flank : TCCCAAAACGTTGGTATCGTGCAGTTGTCAGGCATCAAGAAATTACGCCCCGTTTACTACTCAGCTTTCTTGCTGCTGTTACTTGGCCTGATTCCGAAGTTTGGTGCGATTGCAACTCTAATCCCATCTTCAGTTCTTGGTGGCGCCATGCTGGTTATGTTTGGTATGGTGGGTGCGCAAGGCATCAAGATGCTGTTGAAGGTTGAGTTGAATAACAAAAACATGCTCATTATTGCTGTTTCGATTGGCCTTGGTTTGGGTGTGACGACTGAACCAACTTTGTTCCAGTTCCTGCCTACCGAAGTTCAGACTATCCTGAGTAACGGGATGGTTGTTGGGAGCTTTACGGCGGTTATTTTGAACTTGTTGCTGAATAATACTTCTTTGAAAAACAAAGTGGAAGAAGAAAAATCATAAATTTGAAGTATGTGAGATTATCAAGTCATAAAAATGAGGGACTTTCTAATTATTGGATGCCGGTTTAATGGGATTTGTTTAGT # Right flank : ATGCCCCTTGAATTCCGCCATCGGTTTCAATGGACTGCTTTCTGTATTCCCTGCACTTACAGAGGTGCTTGTTTTAATTAAAAAAGAAAAGGTACTAAAAGGTTTAGTACAAAAAAAGAGAACTTGTCGATTGACGAGTTCTCTTTTTTGGGCTGTAAAATTTCTGGTATTGGTGGTCACGCCAATGCCAGTTTTTTATTGTCTTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTGTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //