Array 1 24354-26237 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGS01000009.1 Lactobacillus helveticus strain IMAU30040 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 24354 32 100.0 34 ................................ TAAAGGGATAACTTTTAAATTTGATAATAGTGAT 24420 32 96.9 34 ....................A........... TGCTTATAAGTGGGTATTATTTATCAATCATATT 24486 32 100.0 34 ................................ AATTAAGTCTAATCATAGGGGCAATAATTGCTTA 24552 32 100.0 34 ................................ CTATTGCACGTGTTGGAGTTTTTCCGTATCTGCA 24618 32 100.0 35 ................................ GATGTGCCCGACTGCTCATGCGTGGTATTGCTCAG 24685 32 100.0 34 ................................ ATTTATCAAACAAAATGTTGATTTAAATTACTGC 24751 32 100.0 24 ................................ ATTCAAGATGAACGCATTAAACTT Deletion [24807] 24807 32 100.0 35 ................................ AGCTAACGTTAGTATGGAAGTTAACGATCCCAGTT 24874 32 100.0 33 ................................ ACTCCCTATGTCGTCCAATACAAGCAGATCTAC 24939 32 100.0 36 ................................ TACCAGAATTGTGCTTGTTCTAGGATACATGGCCTT 25007 32 100.0 35 ................................ ATAACGTAATTAAGGTCAGATGGATCATATTTGCC 25074 32 100.0 34 ................................ TTAGCTTTAGACTGCTGATCCGCTAAGCCAGCCA 25140 32 100.0 34 ................................ TTACGAATCTTAATTGATTTAGGATTCGTATTGG 25206 32 100.0 36 ................................ AATTTAATATTTTGAATTTTCATGATCTTATGAATA 25274 32 100.0 35 ................................ AAAGCAACTTTTAGAAGAAGCTAGAAATGCTGAAA 25341 32 100.0 35 ................................ ACTTGAAAAGCTTTTACAAGATAACGGCAAAATCC 25408 32 100.0 34 ................................ TACTAGGCAATTTGATTGGCGCGACAATTCCTAA 25474 32 100.0 35 ................................ ATTTCCAGATAATGAAGAAGCTCGTCAAAATTATC 25541 32 100.0 35 ................................ ACCAGACTTGTTATCTGCTAGCCTATATGCTTTTG 25608 32 100.0 35 ................................ AGCATCAACGGCTCTAATTATGTCATTGCCGGTTT 25675 32 100.0 34 ................................ AGTTTTGGGCTTGTACGGTGGTGAACTTGAATTT 25741 32 100.0 34 ................................ AGAAGATGGATACAATTTTTAGAAATTCCAGTCT 25807 32 100.0 35 ................................ ACACCATATGTGGTCAACGCTTTAATTGGATTACG 25874 32 100.0 34 ................................ ACTAACTGGAACATCCAAGTACTGTGCGGAAACC 25940 32 100.0 35 ................................ ATCGGCTAATTGCTTTTCAAGTGAATCAGCCTTTG 26007 32 100.0 34 ................................ ACTGAGACGCTAGACGCTATTAGATCACAGTCAC 26073 32 100.0 35 ................................ ATCAAGCTTGCCAACGGGTCGATTTTATTCTGTGA 26140 32 100.0 34 ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 26206 32 96.9 0 ...........C.................... | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 99.8 34 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TTTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //