Array 1 215352-215842 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047158.1 Anoxybacillus sp. PDR2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 215352 30 100.0 35 .............................. ACCTTCTGAACGCTTGCAGCCTAAGGGACTTTTTA 215417 30 100.0 37 .............................. TTTTTGTTTCCCACCTCAGAAGGTGTTAACCTTCTGA 215484 30 100.0 36 .............................. ATCTATAAGAAATTGCAATCTGCAAAGATGACAGAT 215550 30 100.0 36 .............................. AAAGAACATTATCGCTTCTTCAGGAGTTGTGGCGAA 215616 30 100.0 36 .............................. AAACCATGCTGCAACTTTCGAGAAAAGGGAAACCCG 215682 30 100.0 36 .............................. TTAAAGCAATTACAAGAAGAGCAAAAAGAGGGGTTG 215748 30 100.0 35 .............................. TTCTTCTGTGCGAATAGTTTCGTAGATGAGAATAT 215813 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 36 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : ATAACCACTCCGAGATACGTTCAAAACCCTGCACATCTCCGATACCGGATACTTGGAGCGGTGTTTGTGGATAAACGCAAAGATCAGTTCCGGTCTTTTGCGAAGATGTGCATCGCCTTTTTTAAAATCTCGTTCTCCATCTCGAGTTGGCGGATTCGTTTCTGCATGTCCAGAAAGGTCTTTTCCTCGATTTTCAGGTTGCCGCTGCCGCGAAACGCATTGGTCGGATCTTGTTTGAATTCGTTGATCCAGCGGTACAGGGTATTGTCGGATACGCCCAATTCCCGGGCGACCTGCGCCACTGGCTTCCCCTGTTCTTGAATCATTTTCACGGTTTGGATTTTGAACTCTTTGTCGTATTTCTGACTCATCTTCGGACACCTCGATTTTGTTAGGTTTATTGTCGCATTCTCAATTCTCGGTGTCCACTATTTAGTCTAGCATCATATAATGACATTGTATCAATTTTCCAAATGCTGATTTCATCATTATTTTTGGGG # Right flank : CCTGATCGCTTCTTTTATAAATATCTGTTCGTCAATATATGAGAATTCGCGTCGCTTGCTTGTTTTTCCACATTTTTATGAGCGTAATGTTCCTCCTATAGGTGAAGCTACGAAATTCATTAAACGAGTAGAACGTGTTGCAAAACGCATAATGGATGCATAAATGCACATAAAAAATCCACCACCTTGGAAATCATATACAGTGACCAAAACCAACTACCAAGGGGTGGACACGATCATGATTTCCAATTTAAACAACGAACATGCATGGTCTTATGAAATGGATCCACTTTTAGCATCCTTATTTCGATATATTGACTCTCTCTCGTTGCCGGAGACACCGTATGTGACAGGAAGACCGCCGGTGTCGAAAAAATCTTTATTGAAATGTTTCTATTTGAAAACCTATTTTTCCATTGATTCCTTGCGAAAATTAGTACGCATTCTGCAGCGTTTTCGCTGTTTTCAGCGGGCTTGCGGGCTTAGTGAAGTTCCACATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 440917-442409 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047158.1 Anoxybacillus sp. PDR2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 440917 30 100.0 38 .............................. CTTGGAAGGGGGCTGATACCATGCAGGCTCGCTTTCTT 440985 30 100.0 35 .............................. AACCATAAACATCCATTCAAAAAACCTACCTTTGA 441050 30 100.0 37 .............................. TATCAATAGCGATTGTTCTCACAATTAAAACAACTCC 441117 30 100.0 35 .............................. AGGGCTGTAGATTCAGAATTTAAAGCTGCAACAGC 441182 30 100.0 35 .............................. TCGGTCGCGATATACAACCGCTCAATCGCCGACCG 441247 30 100.0 38 .............................. CTCAGTCTCTGAAACGGAGGCTATCGACCCCAAATATC 441315 30 100.0 35 .............................. ATAAAAACTTGTCCTTGTTGAGTTCCTCCTGGCTG 441380 30 100.0 36 .............................. TCACACCTTTTATTAATGGAATAACCAACATCTTTA 441446 30 100.0 39 .............................. TTAGACCGGACATTGACGTATTTTTTCAAGATGGTGCTA 441515 30 100.0 36 .............................. AAAAGGATGCGTTGACGGCGGCCCAAGTAGCTAATA 441581 30 100.0 37 .............................. TACTGCGAAAAGGTAAAATTCAAGCCATGTCTTTTGA 441648 30 100.0 35 .............................. TGAGCTTTCTTCGTGGCAAACCCGGAGCAGACGGC 441713 30 100.0 37 .............................. CCTTCCGGTCCTATCCCCCGAAGTGGTAGCCGATACC 441780 30 100.0 37 .............................. CCTTCCGGTCCTATCCCCCGAAGTGGTAGCCGATACC 441847 30 100.0 35 .............................. ATATGTAGGCGGTCTTTTTTCCTCATATACGCCAA 441912 30 100.0 36 .............................. ATGAAAGGTCGATGGGGGATGTGATTCCCCATCCCC 441978 30 100.0 37 .............................. TTCGCAAAAATGTACTTTTACCGATCCCCTGAGGGCC 442045 30 100.0 38 .............................. ACAATCTCTTGCTTGCAATAACGTAAATACTCTTTGTC 442113 30 100.0 37 .............................. GAACAAGAGCTGTTTTCCCCATCGACGGGCGAGCGCC 442180 30 100.0 36 .............................. TTTTTCAATTGTTCGTATAGCTTCAGGTAGTCAATG 442246 30 100.0 38 .............................. TGGCAAAAAGCGCTGGTTGCTGCAACATTCGGATTCGT 442314 30 100.0 36 .............................. AAACTACTCTATGTAACAATATCCTAGATCATCGGC 442380 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 100.0 37 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : ACTTATGAAAACCGATATGGCGATAAGCGAACCCATTTTTTTTCGCCGCTTGATCTTGTTTTTTCAGATATGATAGAGAAAAATTTTTGCAATAAGTTTCAAGCCTATTTTCAAGCGCAGCCAACGGAGAGAGTCAAGATTAAGCCGATCAAAGTAACAGAAAAAGATAAAGTGATTACAGCGTTTAAAGATTTCCGTATCAATGCATGGAATGGAACTTATGAAATTCAGGCCCCGCTTGCTTATTTGAAATTTATGTATGATGTTGGGGTCGGTTCCAAAAACTCGCAGGGATTTGGAATGTTTGAGATCATAGAGTAGTTGTATTTCTTTGTCGTCGACCTCTAGTAGCGTACGAATCCCGGGGGATCGACGACAATTTTCTATTTGCCAAAATTCCTATAGTGATAAGAGAAATAAAATATTGATAGAATCTTTAGATAAGTTTATAATAACGTTGTATTGATTTTCCAAATGTTGATTTAACAATATTTTTTAGG # Right flank : CCCTAGCAGGGATAATATAGAAGGAACGATCTTTTTTGATAGTGTGGGGAAAATAGAAGAATCTCTGATTTCCTTAAAGCTTAGCTGTCGTTATTTCGTGGTAATCGGTTTACGCTTGCCGACCGATTTGCTCATTTTAATACATCCATCGAGGAGTCTCCCGCCTCTAAGCGAAGTGGAGGTGGGAGAGGTCATCAGACCGCTTGCTGTTCGATTCTTTGCTGTGTGCTTTTGTGACAGAGACAAGTCTGTCACCCTCTTCCGATCTTCGGTGTTCTAGGCGGCTTCATTGTATGGATGGCTCCGCCGCCCTTATTTTGTCATCGTCTGCCGTTTTTCCGCTCCTGCTTTATGCGAATCTGGAAAGGAGCGGATCTTTTCTGTTTTTTAGAAAATTTCCCGTTGCGCTTTCGACTTTCACATGTTCTAATAGGAATGATAGTAAAGCGAATGATTGGTTCGCCGATTTTGCATACAATGGAGGGCTGGAAGTTGAAAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 461470-462703 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047158.1 Anoxybacillus sp. PDR2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 461470 30 100.0 36 .............................. AACGAATTGAAACGCCGCTTGGACGAGACAGAAGTA 461536 30 100.0 36 .............................. TCAAAATTCGGGGAACTAATGAAGACTTTTGAAAAA 461602 30 100.0 36 .............................. GCGCCTGCTCGAAGTTAAGCGCGCAATGGAAGCCGG 461668 30 100.0 38 .............................. AATTCCCAAGCACCAATAATTCATCAGGGATTGATAGC 461736 30 100.0 38 .............................. GACTTAGCGATGACGATAACGTGCCGACAACTCCGTTC 461804 30 100.0 35 .............................. TTCAGCAGTACCATAGGATTTTTCAAACAACTTTT 461869 30 100.0 38 .............................. AATCGATATCTGTCCATTGTAGGGCAGCTGCCTCCCCT 461937 30 100.0 37 .............................. CACATACGATTACGTCATTTCCAAGCGTCCAGACCTC 462004 30 100.0 38 .............................. TAAGCCCATTGTGCGGCTGTTGCTATGAGGATGGCCGT 462072 30 100.0 36 .............................. CTCAACGAAATCAAACAATTTCGCCGACAAATTAGC 462138 30 100.0 37 .............................. TCCCGAACAAATTCTTCCCCTTCTGAGCTAGTCCACT 462205 30 100.0 38 .............................. AAGATTGATACACTGGAAGGAACGATGACCGCTTCTCC 462273 30 100.0 37 .............................. TCATCATCGCATCTATTGCATCTGGCGGCGGAGAGGA 462340 30 100.0 36 .............................. TGAGACGATTCGCACAAAGGAGAAACAAGAGGAAAA 462406 30 100.0 37 .............................. CAGTTTATGGGACGTCTACAGCAAAAAGTGTGGGGCC 462473 30 100.0 37 .............................. AATAGTAGATCTTTTCCTTCTAAGCCTTTTTCTCGAA 462540 30 100.0 39 .............................. ATAGAAGGTAAATTTCCTTTTTCGATTTTACTGATGTAA 462609 30 100.0 35 .............................. AAATCTAGATCATACAGGAAAACCGCCTTTGCCGC 462674 30 83.3 0 ................CA...A..AA.... | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 99.1 37 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : GATTGTCGTTCTCATATTGGATACAAAGAATTTTGCAACTTCTTGAGGGCGCTTCCTATCATATCATGAATCTTTCATGGCTATAAATTATTATAAGTGAACAAGTAGATAGATGCAATGTGACATGTTAATTTTGACATAGATCGAGCGTTTGGACTTTTTCTACGGTCGGGCAGACCCATAGCGCCGTTTTATGGAAACGTGGGCGGAGCTGAGGATGGCGTTATTTCCATTTTCGTTGACGAAAAGGCAAGCCTGAATCTGACAAGCTTCGGCAAACTCAAAAATCCTCATTTGTTTTCCTAAAAATGACGTATGAACGAAAGAAAAACTGTCGTCGACCTCCAGTAGCGTTAAAAACCCGGGGGATCGACGACAATTTTCTAACCGCCAGAATTCCTACAGCGATCAGAAAAAGAAGCTATTGCTCGAACTTTGAGATACGTTTATAATGACATTGTATCCATTTTCCAAATGCTGCTTTTATCATTATTTTTGGG # Right flank : CATTTTGCACGCACAGTGTTTTTACTGCCATCGACGGCGCGTCAATTATAGGGCTGTGGTGATTGAAATGGCTTTAAGAAAACACATCAGGAAACTTAAGATCAAATTTTATGTTATGCGGTAGATATATGGGGTCTTCCCTCATTACATTTACGTGATGGGGGATAGACCCCATTATTTGTTTATTATCATATAAGCCTCAAGTCTTATTCGAATATACATTTGAGGTCCATTTTGGAACATTCCCTTTTACTGTATTCTTACAATAAGAAAAGGAAGAGTCGCTTGATCTTATTCCATCCAAGTTGTAGATCGAGACAAAATGTCGACTCTGCCATTAAACAATGAAAGGCGACTGAATCATTAGAGCATGTGAAGATTTATCCGTGAGGTTCAGCCGTTTTAAGGGCGCCTGAAAAAGTTGATGGTTCGAAGTAGGGTGAAGAAACTGATGTAAAATTTAATGGGAAAGGAAGGAAAAACATTGGAAAAGAAAATTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 471593-474219 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047158.1 Anoxybacillus sp. PDR2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 471593 30 100.0 36 .............................. CATTTTAGAAATGAACTCGTTCAAGCGGTCAACAAT 471659 30 100.0 38 .............................. ATGCTTTGCTAATGGCTGCGAAAAGCAGCCTTTTTTAT 471727 30 100.0 35 .............................. CATTTCTCTATGAGTATAATATAAATTGTGTCTTA 471792 30 100.0 35 .............................. TGCAGTATACAGGATTGTTCGATGATGAAGGAAAC 471857 30 100.0 37 .............................. TGGGGATTATATGACGGTATATGGTACAAGGTGAAGG 471924 30 100.0 39 .............................. CAAAATATGCGATATCGCATATAATAAAATTGAAGGATG 471993 30 100.0 38 .............................. TCAAAAAGAGCTTGTCTAAACATAGGGATGGCCGCCCA 472061 30 100.0 36 .............................. CGCTTAAAATATATTCTTTTAGCTTTACCATACAAC 472127 30 100.0 36 .............................. CTGTCAATTCGTTTTCTATTATTCCAGGCACTCACT 472193 30 100.0 38 .............................. AAATGTAACCCATTCCGTCATGATAAATCTGTATATTT 472261 30 100.0 39 .............................. TGGTTGGTTTGTAGTTTCGTGTGAGTTTTTCGAGTTTTT 472330 30 100.0 35 .............................. CTTGAAATAGCAATAGTTTGTGTACCAATATCAAT 472395 30 100.0 35 .............................. ATGTTCTCTGCAATTAAATCGGCGTCTCCATATAC 472460 30 100.0 37 .............................. CGACAAAGCAACGGGGAACGTCATTCTCGACACAGGC 472527 30 100.0 38 .............................. TTCACCATCATTCACCACCAAGAACACGGTCACACCAA 472595 30 100.0 37 .............................. ACGACCGAGGCAAGAAACGTGCGAACTATGCTGTGTT 472662 30 100.0 35 .............................. AATTTGACCCTGCAAATACAACACTTCTTGCCCAA 472727 30 100.0 37 .............................. CGAGTCCACACACATTTGTGTCGAGTCGTTCATCAGT 472794 30 100.0 37 .............................. TATGTCTTCGTCAGAGAATTCAAATGAATGCGAAATA 472861 30 100.0 36 .............................. ACGGGAATATCACGGAAGCGGCGCCAGCAGGCTTTT 472927 30 100.0 37 .............................. TCCGGCCTGGTATCATGCTGGAGAGGTCGCCGCTACA 472994 30 100.0 37 .............................. AACGAGGGGATGTCGATGGTGTATCGTTTGGCATGCG 473061 30 100.0 37 .............................. TAAAATATTCCCGTACAAGGAATATTTACTAGGGTGA 473128 30 100.0 37 .............................. ATTCAATCCTTCTATTCAAAATCTACGCCTAAACTAA 473195 30 100.0 36 .............................. CGGTGTGTTCGTTCATTCTGGGGCTGTATTCAACGC 473261 30 100.0 36 .............................. TAGTAGACGCCGAATGATTGCTCGTGTCTTTTTACT 473327 30 100.0 36 .............................. AATACTGGATATTGTTCGATAATGATAGTGTTCTCT 473393 30 100.0 37 .............................. TGAAACAAAGTACACAGACGAGAAAAAATGCCTGTTT 473460 30 100.0 37 .............................. TTACAACTGTAACAAAAGAAATCGAGTACATAGGACA 473527 30 100.0 35 .............................. TTCACTCTAAAAGATAAAACTTTCTGTCCATTTAC 473592 30 100.0 38 .............................. TGAAAAAACGATAGACAATTATGACGGCAGCGTCCCAC 473660 30 100.0 35 .............................. CTCCAAAACTACACAAAAATCATAGATTTTTCAAT 473725 30 100.0 35 .............................. AAGGTGTTTTTATGGGTGCCAATGTTCGTGAACGA 473790 30 100.0 39 .............................. CGCAATATAGTTGAAAGATAAAAGTAACCATAGAAATCA 473859 30 100.0 37 .............................. GCCATTGATACCAACCTCATTGCAAATTATCTCAAAG 473926 30 100.0 37 .............................. TCATCGAAAGGGACTAACGTTTATATCGTCTATGGTG 473993 30 100.0 36 .............................. AAGGAACCGAAGATTTGATGCAATATTACGGATACG 474059 30 100.0 35 .............................. ACACTTGCTATGATCGGATTTTTTTCAAAGTCGCC 474124 30 100.0 36 .............................. CGCTCCTTCCCCAAATGTCGGTAAATAAACAGAAGT 474190 30 90.0 0 .................A....G..A.... | ========== ====== ====== ====== ============================== ======================================= ================== 40 30 99.8 37 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : TGCTCTCGTTTTTGTTCACGCTTCAATTATGTGCCTCCTTTCGAGGGTATAGGAGTATTTATCATTAATTATAAATACCGACAGTCGGTTTGTAAATAAAAAATTTTATTGGCCAGATAAAATGATCGATTGTGAGATTCCGTGTTGGCATGATGATGATTCGATTGAAAAGAGATAGGCTCGAGCCTGTTTCCTTAAGTGCAGAATTTTGGAGAGGGATAACTGAAAGGGGGAATCTATTTCAGAAAAACGGGGATAGAACACGTATTAAAGAAATTCAACTTTTAGGAAGTTGGTGATTACGTGCGCATCATAGATCCAATATCTCAACTGTCGTCGATCTCCAGTAGCGTCAAAAACCCGGGGGATCGACGACAATTTTCTAACCGCCAGAATTCCTACAGCGATCAGAAAAAGAAGCTATTGCTCGAATTTTAAGATAAGTTTATAATAAAATTGTATCCATTTTCCAAATGTTGATTTAATCATGATTTTTTGGG # Right flank : CAACTTTGCATTTTTCATGATCTCCACCGCGTTTCTGAAACCATCTCACCGCACGCGAAAACATAGACAGATAAGGGACTTCGCCAAGCCCACAGGCCCGTTGAAAACAGCGAAAACGTTGCAGGATGCGTACAAATTTTCTCAAGGAATTAATAGCAAAATAGGTTTTCAAAAAGAAACATTTCAACAACGATTTTTTTCGACACTGGCGATCTTCCTGTCACGTACGGTGTTTCTGGCAACGACAGAGAGTCAATATATCGAAATAAGGAGGCTAAAAGTGGATTGATTTCATAAGACCATGCATGTTCGCTGTTCCAATTGGAAATCATGATCGTGTCCACCCCTTGGAGAGTTAGTTTTTGTCACTGTATATGATTTCCAAGGTGGTGGATTTTTTATGTGCATTTATGCATTTGTTATGCGCTTTGCAACACGTTCATTAGTTAAGAAAGATAATGTTAAATGAATGATTAAAAAAATATAATAGATAAAAATAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2296093-2295667 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047158.1 Anoxybacillus sp. PDR2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2296092 30 100.0 36 .............................. AATCGATATTTCCTTGTGTCTCTGCCTTCTGTTGAC 2296026 30 100.0 37 .............................. TAGGGGTTCCGGCCTCCACTGTCTGTACAGCCATAAG 2295959 30 96.7 36 .............................C TCGATGTGTTTAAACTAGCAGCAATGATGAGAGAGG 2295893 30 96.7 35 .............................C CGTGATCAAGTAGAAATCAAAGGAACAGCGATGGA 2295828 30 100.0 35 .............................. TTGCAATGCTAATTGTTGTGTCAACTCGTCATATT 2295763 30 93.3 37 ................C............C CCGTCCGGATTAGCTATTGAGCTAGAAAATATCCTTC 2295696 30 93.3 0 .................A..A......... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.1 36 GTTTGTATCTTAACTATGAGGAATTGAAAT # Left flank : TATACTGGGAAACAAAAATTTACGGACCGTCGCGGAAGAGCTGAACAATTTATGAAAAAATATCATTTGCAGCAGCAAGATAAATAATGGAAGGATAAAGCCGTACGAGACCGACCGGGAGCCAATGGTTTTATTGATGAGGGAGAAAAAATTGTTTCTCATAAACTGTTGAGTAAAAAAAGAGGATTTCTATATAAACCCAGTCTGCCTTTCCAGATGCGCCCGTTTAAAATTTTACTGGGATGAATTGATAAGCCGGATTGATATAGCTTATTGGTCATGCGATCCCCTTCGGATCGCTACGGGGTCTGAACAAAGCACAGATAAAAAATAAAGTCGTCGACCTCCAATGGCGTAAAAATCCCTGGAGATCGACGACACATACATTTTGAATGAAACGGTTGTCCGATCAACCATTGCACAAACATGCACCTCTCGTTATAATAAAACTAACAAATCGTTCCAAAAACCAAAAAGCTTAATCCATCAACATTTGTTGG # Right flank : ATCGTGTGGGATGTTAAAGGATTAGCTGAAAAAGAACGCAGAGCCAGTGTATGGTTCTACGTTCTTTTTTATATAACTTAAACGATCGTTACTTTTTTGTTGAAAAAACAACCTATAAAAAATACAGATAGAATATAGATGTATTAAATAAATACAGGATATTTTTTGTTTTATTGTTGACAATATTCAGACAATTAATTATTATGTTTTATATACGATATTTACAAAAACATAATAAAAAGAGGTGCCTGAAAATGGATAGGCAAGAGGCGGTGTATTGCTCGTTTTGTCATTCGGTGGATGTGGCAAAAATGTCTATGTTTGGAACTGCGCAGCTTGTTTCGCAATATTACTGTCATCAATGCAAAAGTGTTTTCGAATGGGTGCGATGGCGGAGGACATTGGATGAAGTAGAGAAAAAGCGATGAAAATCTGAGGGTGCGCTTTGTCTTTTGAACCGCTTGTTAATGGAAAGATTGCTTGTGGAAGGGGGCGAAAGC # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTAACTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 2306863-2305701 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047158.1 Anoxybacillus sp. PDR2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2306862 30 100.0 36 .............................. AAATATATCGATGGTTATTTTGAAACAGAAAGAGCG 2306796 30 100.0 39 .............................. TCTTCGGGTGTCATCTCTTCCAGCACCTTTGCGTCTTGC 2306727 30 100.0 35 .............................. AGGTTTCGTTGGTGATAAGTAGGTGCAAACATAGA 2306662 30 100.0 36 .............................. GATCACTTAATTTTGTGTTTAGACATTCAAGCAAAA 2306596 30 100.0 37 .............................. TGTGAAAGATGTTCAGCGCCAGGAAAAATTGTGCATC 2306529 30 100.0 35 .............................. CGTTTGAAGAAGCCAATGAGTTAGTGAAAAAATAC 2306464 30 100.0 38 .............................. TCGTTTTGGTCACCGATGAGGATTAACGCTGTACGCCT 2306396 30 100.0 38 .............................. CTTTTTCGGTATCCACTCGTACAAGTCGTCGATGTGAC 2306328 30 100.0 39 .............................. TATTTTTACACGAAAATATAGAAGATGCTTGGGACACGC 2306259 30 100.0 35 .............................. GATTACACAAATCTATACTTTGATGCGGAGCAACC 2306194 30 100.0 35 .............................. AAAAATCTAACCCATTCGCAATATCACTTTCTCGG 2306129 30 100.0 38 .............................. TGCGGAAGCAGATAGAATACTAGAGAGCGGCGAATATA 2306061 30 100.0 35 .............................. ATGCTAAATGTGAGTTCCTGCGATTCGTCAGATGG 2305996 30 100.0 35 .............................. ATAAAAATGATTGTTGATTTAGAAGGGAGAATGAT 2305931 30 100.0 36 .............................. ACAGGTGATGCGAATACAACAATATCCGCATTTTGA 2305865 30 100.0 38 .............................. AATATGCTTGCGAGGTTATTGAATACCACTCCAAACAA 2305797 30 100.0 37 .............................. TCGACGGTAGGGAACAATCTTCGCGAAGTTGGTCAAA 2305730 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 99.8 37 GTTTGTATCTTAACTATGAGGGATTGAAAC # Left flank : CATTGTCCGCTTTCTGTCAAACGACACACAACGAAAACAAATGGAGCTTGCGGGGCGCGCCTATGCACTCACCCAAAATTGGGAGGTTATTTTCGAAAACTTAATTTCTGAATATGAAAAAGTATGGCGCCACCATGCGGAGAGGCTACATGCATAGCGTGTGGGGAGACAAACAAAAGAATAAGTTTATATACTTTCGATTCATTACAAACTCAAGATGTATTGATATCACTAGCGATGTTTATTTTATGTGTTTTCCGCAACTGATCAAGATCAGGGTTAATTTGCCAGTTTGGCTTCATGCACAGAAGGATGACAAGCTTCTGATGAAAGCTGTCGTCGACCTCCAATGCTGCTAAAATCCCTAGGAATCGACGACAGTTTATTTTTATAAAAAATCTTGGCACAATCAGCAATTGCCCCCATTTCTGATTTTCGCTATAATAAAACCAACCATTCCACCCAATGAGAGAAACACGGCAACATCAACATTTTTTTGG # Right flank : GACATCAAATTGGTCATCGACACGCTAAAAAAGGCTATAAAAAAAACGGAATGTCAATGGACTCCTCCTCCATAGTGATCAAGGATTCCAATATACATCCGTTGATACAACAACGTGCTAAAAAAATACAATATAAAAGCCAGTATGTCCAGAAAAGGAAACGGTTTGGACAATGCCTGCATGGAACACTTCTTCCTCCATTTCAAGGCAGAGTGTTTCCGTCTGTACGCTTTCCGCACGGCCGAAGAGGTGAAGGATGCCGTACACCAATCTATTTGTTTTTATAACCCTCAACGTTTCTAAAAGAAATTAAATAACCTGAGTCCTTATGAATATCGGACTCAGGCTGCTTAAATGTGCTTTTTTATTCCTGTCTACTTGACAGGGGTCTCTTCACCTTTGGAGTGCTTTTTATTTTAAGAAGGTGGCGGGGAAGGGAACGACATTTACGGAAGCGGTATCGAATTCCTCCTTCTCGCATCCATGGTTCGCTGGGGACG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 7 2316978-2315753 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047158.1 Anoxybacillus sp. PDR2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2316977 30 100.0 39 .............................. GCGGCTGCAAACGGTGAAGGAACCAACTCAGACGATGAG 2316908 30 100.0 35 .............................. CCCCGCTATCATTGAATATTTTCTTTCATGATCGC 2316843 30 100.0 35 .............................. TCTTGCACACAAAGAAAAATTCACAGAAGAACAAT 2316778 30 100.0 38 .............................. AACAATTCTTTTGTTTCCCTATCAAAATCAAAGTTCAT 2316710 30 100.0 38 .............................. TAGGTATCTTCAACTGTATTGACGGAATAAGCATTTTC 2316642 30 100.0 36 .............................. TCAAGAACGAAGGGAGGAATGATGGTTGGAACGACA 2316576 30 100.0 36 .............................. TTCTTGATATGAAAGGTGGCTTGGAATTCGGCCGCT 2316510 30 100.0 36 .............................. ACAATCCAACCACTGCCCCATTCACGTTCAGCAATG 2316444 30 100.0 36 .............................. TGGGGGATGACGCTTTATAGGTTTTGAAAAAAAGTC 2316378 30 100.0 35 .............................. TTTCGAGCACCTTGGCACGAACAAGTACTTTCAGA 2316313 30 100.0 37 .............................. GCACCTGCTTCGAAACCTTTATTCCATGCTGCCATGA 2316246 30 100.0 36 .............................. GAGGGAAAGCTTGTAAATATTGGCGATGATATCGAC 2316180 30 100.0 35 .............................. CACCGCTACCAAAAAAGTAGTTTGTTGATATATCC 2316115 30 100.0 38 .............................. TCTTCCAGCAATACTTTGAGTAGCAATCGATCTTTTGC 2316047 30 100.0 35 .............................. CGGACTCTCCCCCCAGGTTCTAATCCACCATTTCT 2315982 30 100.0 36 .............................. ACAGTCCAACATCCGTTGTAGTCTTCAGCCAGTTGA 2315916 30 100.0 35 .............................. TTAAATACATGAGAGAAAAAGGATTTAAGAACGGA 2315851 30 100.0 39 .............................. TTGCAGAGCCGATTTTAAGAGGTGTTCCGTTTAACGCGC 2315782 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 100.0 36 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : TTACTGAAGAAGCATCTAAACGTTCTCACTACAATTTTAAGCAGTCTTTAAATATGGAATTCTTAAAATTATAGGCAAGTTGATTTTTTGTTATATTCTATTATCTTCCTTTCTGTTCATGGAACTTCTTCGTTTACTTCCATATTATCCGAAAAGCTTCTATTGGCCGCAGGGAATAGCATATATAATGAATCGTTTTAGGAATCAGTAACAAAAGACTCTATCGTTTCCCTGCTTTTAAAACAGCCTACGGCTCTGATATTTCAGAAAGACCGAATGGAAAACGCCGCTGCGAGACAATCAATTTTTTACTAAATCTATGAAAAAAGATTTGTCGTCGACCTCCAATAGCGCACAAACCCCGGGGGATCGACGACACATGGCCAGTCATCAAAAACCCTACAGCCATAAGGAAAAGAAACGATTGATCGAATTTTAAGATAAGTTTATAATAACATTGTATCCATTTTCCAAATGTTGATTTTATCATAATGTTTGGG # Right flank : ATAGTTGGTCGATTTACAATGAACCCATAAGCTGAAACACAAGGAGGCGATAAATAAGTTATACTGAGGACATGGAGAAGCGGAATCGATATACAGCAGGATGTAAGACGAAGGTCGTACTGGAAGTGCTGAGGGAAGAGCAGACGGCAAATTGAGCGCGATGGAATAATGATTTGTCCCTATCTTGAATTATGTCTTTGCTTAAATAACATGCTTGGACGGCGCGCATCTGCACCGCCCGCTTCACTGTTCATAAAAAAGAATCGCTTTCGTGAACTCGGTAAAGTCGGTTAGATGGTGATCAAGTATTTTTTGCAAAATGGTCAAATTAATCTCCTGGTAGTCGTGAACAGCGATGTTTCTAAATCCGACCATCGCTTTCATTTTTTGTGAAAGAAAAGGAGTGATGATGCCGTGCTGTTCTAAAAGAGAAAAAGCGTCTCGACTGTTTTGGGGGAGGCCTAGCTTTTTCTGTGCGACCATGTGCATCGCCAGGCCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 8 2338570-2338270 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047158.1 Anoxybacillus sp. PDR2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2338569 30 100.0 38 .............................. AATGTGAGGTATGCGGTCACTCAATGGAGCGAAATTAT 2338501 30 100.0 36 .............................. TCAGTTGGCAGTCATATAATTTGCTTTCCTCTATGT 2338435 30 100.0 38 .............................. TCCTCTTCCGCAAACATCTTCACCATTTCACCAATCAT 2338367 30 100.0 38 .............................. CCGTCTAATCCTGTGTCACTCACCTCAAGAACGAACTC 2338299 30 86.7 0 .................AC..A...A.... | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 97.3 38 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : AAAAACGTATCATTTAGAAAACTACTAATATAATTGGTTTATGTAAACGATATTACAAGAAACAGGGGGGAATGATGGGGCGAAAGCGGTTGTGTAGCATGGTTGATAGTGAAAGAATGATTATAAATGGTTTGTAAACTCTCCACCGATTATTAACCATTATCTAGTATTTGCTCGAAATCATGTTTTCACAAACTTCATTTTCAGGAAGGAAATTCGAAAATCGGAAAGCGATTAAATAGGATGGAAAAGCGGTTGAAAAGTGTGGAAAGCGGGCGAGGGGAACTAGTAATAACTATTTACTAAGAAAATCGGCTTAAGGAGAGAAACTAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACACTCTCCCATCACCAGCGACCATGCCCATCAAAGGATTGAAAACACATAGTCCTTGAGCTAAAATAAAAATAACCTAGTAACCATTTTAAACCAAATACTTATGTAACAACGATTTTTTGGG # Right flank : AAAATAAGGAGGGGAGAATGTGGTTCCGGAGATCATCGTTGCGTTGTTTTGTACGCTATATATTGTGATTTTTTTAAACCTTTTGATTCGCTTTGTAGAAACCGAGCGAAAAAAAGGAAAGGTTCTCTTGCCTACGATGGAAGATACCGCTTCAAGAAATCGGTATCGCATCAGAACTTTAAGTTTTGCTCAAAAAAATATGAAGGGCCTATTTTTTATGTTAGGAATCGTTCTTCCTTTGGTCGTGATGATGCTCATCTTTCATACGGGAAATGTTTCCTCCGTTTTCCCATTTTTATATTGGGCATTGATGCCTTTTATTTATTTGAACTTATTTGATTCTTTTGAGATTTGTGAGAATGGAATTTGTGGAGATAAGCTGTACCGTTGGGATGTAATTAAACAAGTTTCATTTGAACCTATCGATATTTTTCATCGTTATTATGGTTTGTTAGAGACGAATGAAACCACTTATGCGATGTGGCTGTACGATAGGGAAG # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 9 2381874-2377973 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047158.1 Anoxybacillus sp. PDR2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2381873 30 100.0 37 .............................. TTTGGCGACATTTAAGCCAAATGATGAAAGCACATGG 2381806 30 100.0 37 .............................. AGGAGTTGGAGCAACGTGAAGGCGAATCAATCGCCAT 2381739 30 100.0 36 .............................. CTGGCTACTTCAATGACTTGCTTGAGGTTTCGATAT 2381673 30 100.0 37 .............................. TGATATTCGTAGTGAGCTTGAGCAGTACACATGGCAC 2381606 30 100.0 37 .............................. CTTGCCAGGCGTTCGAGCTTGCGTTTGACGGTCATGT 2381539 30 100.0 36 .............................. TTTTTCTCTCCACTCGTTCCATTTCTCAGCAAGAGG 2381473 30 100.0 35 .............................. GCTTTTCCTCGATTGACAATTTTACTTTTCTGCTC 2381408 30 100.0 37 .............................. TCCGTTCGGAAACACGCGGAGAAAAAACGCGAATTAC 2381341 30 100.0 40 .............................. ACCTATGCAGACATCTACATGGGCGATAAGAAGCCACGTC 2381271 30 100.0 36 .............................. AAATATAAATAAAAAAAAGATGGAGTTTGAGTTAGC 2381205 30 100.0 40 .............................. TTCCAATTTCCTTTCGAGGGAATCTTTGAAATTGGGGTGC 2381135 30 100.0 38 .............................. ACGGCTATTCATCTTGATCCAGCTCACTCATAATGTTT 2381067 30 100.0 36 .............................. ATGTGATCAAGATCAGTTGTTCCTGTCCCGATATCA 2381001 30 100.0 35 .............................. TTCGCGCAATGGCAAATACTTGACTGGAGGATTTT 2380936 30 100.0 37 .............................. TCTATACCATGCTGCTCGATGGTGAGGGAAATAGCGT 2380869 30 100.0 35 .............................. TTGATCAACACACCTCTGTCCGTTTTTGCCATTCT 2380804 30 100.0 38 .............................. TAACGTTTTATGGCGGAATCTAAAAATTCTTCAGTCAC 2380736 30 100.0 38 .............................. GTATCTATGGTGGTGGGAAATGCTCTAGGCGGCATTCG 2380668 30 100.0 37 .............................. CTCCAAAACTACACAAAAATCATAGATTTTTCAATTT 2380601 30 100.0 35 .............................. ATCAAAGAGAAGGTGCCAATGTGCGGCGCCCCAAA 2380536 30 100.0 37 .............................. AAATGATCGCAAACACTTTTTTGCCATACTTCCAGAT 2380469 30 100.0 35 .............................. CATTTGCTGCAATTGTTGCTGAAGCTGTTCATCAC 2380404 30 100.0 35 .............................. ATGTCTATCAGCAAGATTCTCCGAACGCGGACAAG 2380339 30 100.0 36 .............................. GTTTTGGCTTCGGCTTTTTTGGTTTCCTTCGCCATT 2380273 30 100.0 36 .............................. CTGTACGATCCGCGCGTATCAGTGTGGCGATACTTG 2380207 30 100.0 37 .............................. TTTCATCGCCATTTGTTGTTCCATTTTCATCTGCTCC 2380140 30 100.0 39 .............................. CAAAGGAGGACTACGAATCTATCATTGATCTGGCTTTGG 2380071 30 100.0 36 .............................. TGGCGAAAGATGTTTGCGACGTTCTTGACATCATTA 2380005 30 100.0 37 .............................. GGCTTTTCGTGTATTCTGATTGGAATTTCCCTTCTGA 2379938 30 100.0 35 .............................. GCCACCCTCCGCACGTTCCCAGACTCTCGTATCCG 2379873 30 100.0 36 .............................. GATACTCTGTAACGTCTTCTCTCATCCATTTCATAG 2379807 30 100.0 37 .............................. ATGAATGGCTCTCCATATACACTGATAACATCGGCTA 2379740 30 100.0 36 .............................. CAATATAGCGGGCATAGTTGTAGCCTTGCGGATCAA 2379674 30 100.0 37 .............................. TAGGTAGTGTTCCCGTATACAATATATTATCATCCCC 2379607 30 100.0 39 .............................. ATTTTCTTTTTGCCCTTGGTTCTCTAGCAATCTTATTTT 2379538 30 100.0 35 .............................. CGCGGAAAGGTATGTGATTTCAACGATGCTTGATT 2379473 30 100.0 36 .............................. CGAGAAAAACAAGCAACTGAAGGTGGATTATCATTG 2379407 30 100.0 35 .............................. TTTCACGGCTGGCGGCAAACCTTCATCAAATGATT 2379342 30 100.0 35 .............................. ATTGGCGCTGAAGCGCAAATGGCACAGGAATTTTT 2379277 30 100.0 35 .............................. ACGACATGATGATCGAAAATCACCTCAACCGACTG 2379212 30 100.0 38 .............................. CTATTAAAACCGCCGCCCCAACGACATCATGGGATACC 2379144 30 100.0 38 .............................. GTAAACAACGATCAAGAATATGGCATGATTGCGGACCC 2379076 30 100.0 37 .............................. ACGCGAGGTTCGACCGATAAAATCCTCGCGAACAATT 2379009 30 100.0 41 .............................. CAACCAAGCGACAGAAGGATTGACGCGTGATATCGCGGCCA 2378938 30 100.0 35 .............................. GCTGGATCACATGGTTCATTCCTTTTCCCACAATG 2378873 30 100.0 37 .............................. GTCGTGAGGATGGGGAGTTTTCCGTCTTTGTATAGAG 2378806 30 100.0 38 .............................. TTTTTATAAAAACAATGGTTTCTCTTTCACGACAGACC 2378738 30 100.0 35 .............................. AGTTATGCAAGCTAGGAAAATTTCTAGACATTTTC 2378673 30 100.0 37 .............................. TGTGATTGGCTTGGGCCAGAACCTCTTGAGAGACTTT 2378606 30 100.0 38 .............................. GTCGGTGCGCAGGGCGTGATTCGCCTCTACCGTGAGGC 2378538 30 100.0 35 .............................. CTCTAAAGTAGCAAAGGTAGGTATTGTACGTTGCT 2378473 30 100.0 37 .............................. CCGGAATGGAAGGCAACAGGTGTAGAACCCCCGCAAA 2378406 30 100.0 36 .............................. GATTGCCCGCGGGATATGCAAGTATGGTGGCTATTG 2378340 30 100.0 39 .............................. AAAAGAATCTAGAAGAAGAGAAAAACAGATATGCATCGC 2378271 30 100.0 38 .............................. ACTAAATTCATTTTATTTACTCCTCTTTATAGTTCTTT 2378203 30 100.0 35 .............................. CAGAATACACAGAACATCTATATGATTTTATTTTA 2378138 30 100.0 38 .............................. TGCAGCACAGAGAAAATTTCCCCAACTTCCTCAAAAGA 2378070 30 100.0 38 .............................. AACCGAAACGGTATTCGAAAATCGTTTTATGCATGTAG 2378002 30 96.7 0 ........................G..... | ========== ====== ====== ====== ============================== ========================================= ================== 59 30 99.9 37 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : GCTTTTTTTGTATAATTAATGCAAACAACGATTAAAAATGCAAAACATAACCATCCGGTTCATTAAGATGTTGGGCTCAGACATCTATTATAAGTATTGTTTACAAACAGAAGGAGAGTTTATGTATTAAAGAGAGCAGGGGAAGTCACGTTCTCGGGAAAATAAAAATGGGCTATAACTAACTATTCACATATCTTTTTCTTTTAATCGACTCGTAGTTGAGAACGCTGTTTTACTGGATGAGTTATGAGGGAATAGGCTATTATCTTCATTTTTTATATGCTTTATTTCCTAATAATTGCTAATTATTGAAGATCGTACTGGATAAAATTTGTCGTCGACCTCCAATCGTGTAAAAATCCCGGGGGATCGACGACAAATTTCTAACAGCTAAAATTCCCACTGTGATAAGGAAAAGAAGATGTTGCTCGAATTTTAAGATAAGTTTATAATGACATTGTATCCATTTTCCAAATGCTGATTTCATCATCACTTTTGGG # Right flank : TCGTAGAATCGAATTTGCAAACGGCTTGATGCATCACCCATTTTGTTAGTGTCAAATATAGTTCGCAAAAAACATCAGTACCTCAAATAGGTTTATGCAGCAAGTAATCGTTTTTCTTGAATCTGTTGAATCATCTTAGGCTGAATGTAGGAACGTGCACAAGACTATTCCTCGCTATACTCCATGAGATAGCTTGTGACTAAGCGAATGTAGGAATCCTGGTTGGGGAATACTGGACCTCTGTCAATAGATTGGACAGCCAGAATCGAGAAAATTACGCAATTTGACCGTATATTTGTTCGTATTGAAAAGGTGTAAGATACCCGATAGCGGAATGTACGCGTTTCCGGTTGTAGAAAAACTCGATGTATTCAAAAATCCGACTTTGGGCTTCCTTGCGGGTTCTGAACTTCTCCAGATAGACGAGTTCCTTTTTGAGCACGCTGTGGAACGATTCGATGCAGGCATTGTCATAGCAGTTGCCCTTGCGGCTCATGCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //