Array 1 370360-364484 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKII01000017.1 Parascardovia denticolens IPLA 20019 Contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 370359 33 100.0 35 ................................. CAAAAACGACCAGATTGAGGGCGTCGATGAGGACG 370291 33 100.0 34 ................................. ATCGTATGATTGCGACGGGTGAGCCGGCCATCAT 370224 33 100.0 34 ................................. CGTAAGTGGCTCAAAACCGGGGCGACGTGGGTCG 370157 33 100.0 35 ................................. ACTTTGAGTGCAAATCGTCAGGGAGCAAGCTTCGA 370089 33 100.0 36 ................................. CAAAACATACACATCTTGGGCGTGAATAGGTATGCG 370020 33 100.0 35 ................................. CTTGCAAAAGTGGGGGTTAATGCCGGGATGAATGT 369952 33 100.0 35 ................................. CTGGCGGGGCCTGTTTGCCCTGGGTGTGAGCCTGG 369884 33 100.0 34 ................................. ATAGAGACGACTTTGCTCACCTACGGGGCGGGCG 369817 33 100.0 35 ................................. GTCAACTCGGAAGCGTTCAAAAGGACGATTCTCAA 369749 33 100.0 33 ................................. ATTGATATCCGGTATATCCCTCACGCTGATGTT 369683 33 100.0 34 ................................. CCTCTCAATTTTCAGCTGTCCAATGTTTTTACCG 369616 33 100.0 34 ................................. AGAGACTATCGTCAAGGACGTGAGGACTTTGCTT 369549 33 100.0 36 ................................. ATACTATGCAAAATTTTGAATATTGGAAAATGACAG 369480 33 100.0 32 ................................. TAGCCAGTTTTGACCATGACCTCATGCGCCAA 369415 33 100.0 35 ................................. AAAACATTGCCTAGCTGGCGGTCGTCATAGGCAAG 369347 33 100.0 35 ................................. ATCGGTATTTCCTTGGGATTTGGCTGCGAAATACG 369279 33 100.0 34 ................................. TGAGGTGTAGGTCATAAAAATCCATCGGTCCAGG 369212 33 100.0 34 ................................. TAATACGGATAACGCCAATAAACTGACGTCTGGA 369145 33 100.0 34 ................................. AATCCATTTCGTCATGTTTATGCGCAAGAGGTTG 369078 33 100.0 34 ................................. ATCGCAATGTCTTCAAGGACACCCACATCTTCCC 369011 33 100.0 34 ................................. GTGGGGGATGATAAGCCCACCTGGTTGGGAGATT 368944 33 100.0 34 ................................. GATTTTAACAACCTTTTCGGCCCCCTGACCATGG 368877 33 100.0 33 ................................. TGGACCACACTTTTAACAGCACCTGGTCGTCGG 368811 33 100.0 34 ................................. TTATGCGCAAAAAAATGCGGACATGAATAAATCG 368744 33 100.0 34 ................................. TGAAGACTCGGGCGGTACGACGGCACATCATCGA 368677 33 100.0 33 ................................. AAAGTGTAGAAGATACGAGATTTGACAAGATAC 368611 33 100.0 33 ................................. AGCAAATCGTCATGATAAAAGGCTCCCGCCCCG 368545 33 100.0 34 ................................. ATCCTGCCGTCCGAGTCATCCTGGTAGACAAGGA 368478 33 100.0 35 ................................. TACCATGGAAGGCAAGGTCCGCCAGTTTGACGCTT 368410 33 100.0 33 ................................. CTCGACGGCCCATCATCTCCTCCAAAACTGTTC 368344 33 100.0 34 ................................. TATAAGCTTGTGACCGCCTGATATAATAAGACAG 368277 33 100.0 34 ................................. GCCGAGACGGCGAAGCCAACGCTTTCGCCCGCAA 368210 33 100.0 34 ................................. TTGCTCTCGACTGGGAACCGGCCGCCAGCCAGCG 368143 33 100.0 35 ................................. TTTGACGTATGAAGAGTTTCGTCGAGGGGCGAAAA 368075 33 100.0 34 ................................. ACTATATGGCTGACCGTTATCCTGGACCGTCCAT 368008 33 100.0 34 ................................. ACCTATGTACGGCTGCTTGACGTCGAGGACATCA 367941 33 100.0 34 ................................. TGAAACACTTCTTCGCCTTGAACGCCCTGAAGCC 367874 33 100.0 34 ................................. ATTTTCGATAACCTCCTACGCATAAACATGACTA 367807 33 100.0 35 ................................. ATAAGGAGGTTTTGTATAATGATAAATGGATATGA 367739 33 100.0 35 ................................. CTATGCCAACGCCAAGGTCATCGCTGAGCGTAATT 367671 33 100.0 34 ................................. CTTACGGCGATGGGGAGCCGTGGCTACTCATCGG 367604 33 100.0 35 ................................. CACAAAACCAACGTATCTTTCGACCTCAACGTCAA 367536 33 100.0 33 ................................. TTGACTATCCATGCGGGTAGGACTCTCCTCACC 367470 33 100.0 33 ................................. TCTGACGGCGATATTCGCGTTTTGCGCCCTGAG 367404 33 100.0 35 ................................. AATATTAAGCAATCCTCGGTTGGCGCAGTTGGCGA 367336 33 100.0 35 ................................. GTCGTTGCCCGCGAAGCACATGGTGGTAAAGCCCC 367268 33 100.0 33 ................................. CATCTACCAGGACATCGCCGACCGGACGGAGGG 367202 33 100.0 33 ................................. AGCATCACCATCGACTACCCGCGGGAGCCGGGG 367136 33 100.0 34 ................................. AAAAAGGGGAACGTCCTCAACCCGTCCGGCAAAG 367069 33 100.0 34 ................................. ATCGGCTACGCCTGCGACGAGCCCAGCGTCCAGG 367002 33 100.0 34 ................................. GAAAAGGTGAAGGATTTCGTGAAGAAGTCCAAGG 366935 33 100.0 34 ................................. TCGACGGCCGTGCCGATGCCCTGCGTCGCGTCCT 366868 33 100.0 35 ................................. GCCCATGGGCCGCCAGATACTGGTTGACGCCGCTC 366800 33 100.0 34 ................................. TCCAGGGTTCCGCCGCCCTGGAAGCTGGTGAAGG 366733 33 100.0 35 ................................. AAGGACAGGAGGCGGGCCGCCAGCAGCGAAGACAG 366665 33 100.0 35 ................................. ACCGTGCCCACGGACAGGACGATTGAACTTGAGTA 366597 33 100.0 34 ................................. AACAGAAGAAAAGGGGGAACGCCTTATCACCGAT 366530 33 100.0 33 ................................. ATAGAGGTTGTTTTGTCGGACATGGAGGCCAAC 366464 33 100.0 33 ................................. AGGAGCATGTGGGGTTTAGCCCCTTTGCTCAAG 366398 33 100.0 35 ................................. TCAAAGACATTTTCGACTTTTTCGCGAAAGTGGGG 366330 33 100.0 34 ................................. GTTTATGTCGGGAATTTCGCGGACGGCGATATTA 366263 33 100.0 35 ................................. TCCCGGCTTGAGTGTTGGCCCGTCGTAATGGCCGC 366195 33 100.0 34 ................................. TTCAGGAATTTTACTTGACAGTGGATAGATATCA 366128 33 100.0 35 ................................. TTACGACCCCGTCGGCCTGCGCAACCAGCAGTATT 366060 33 100.0 35 ................................. TCAATTAGAGGAAGTAAATATTCATCCTTTTGGCG 365992 33 100.0 33 ................................. CCCAACACCGCCCCCTATCTCGTAGACAAGATT 365926 33 100.0 34 ................................. ATATTTTGCGCATAAAGATACGAGTCCCGCCTCG 365859 33 100.0 34 ................................. GTTGTCATTAAGTCTGAGCATGCGGGTTTTATAC 365792 33 100.0 35 ................................. TGACTTTGTTTTGCGGGCGATGGCTTACCCCGCTC 365724 33 100.0 34 ................................. TTTCCAACGCCCGCATATACTCGAGAGGGTCGGT 365657 33 100.0 34 ................................. GGCAGCCAGGCGACGCCATCCTTTTTGACCGTCG 365590 33 100.0 36 ................................. TTCCAACTCCCATGATATCCGGTGAGTGTGATAATT 365521 33 100.0 34 ................................. AAAATCGCCTGATGGAGGGCGGCCAGGGTGGCTC 365454 33 100.0 34 ................................. TACAGCACATTTATCCATACTCAGCGAGTCAAGC 365387 33 100.0 34 ................................. AAAGGATTGCGCAAAAACTTGATGGTTTCGGCGA 365320 33 100.0 34 ................................. AATTTTGCCAACGTGGGCCAAACCAACCGTATGG 365253 33 100.0 34 ................................. GTAAGGAGCGTATGCATATGGATGAAAACAGCGT 365186 33 100.0 34 ................................. ATATCGTATTTCTTATGAAGCTCATACATAATTG 365119 33 100.0 34 ................................. CATCCAAAGCGTCCTGAAAAGCGTCCTGGAAAGT 365052 33 100.0 34 ................................. AAATATTTAAACACTTGCTTCATTTTAAAAAGCG 364985 33 100.0 34 ................................. GCTTGCAAAATTTTATCCACCAAGTAGGGGGCGG 364918 33 100.0 34 ................................. CCGCCATAATTATTCGCGCGCAGGGCGTGCGTAT 364851 33 100.0 34 ................................. ACCAGCGTCTGCCTATACGAGGCCGCCCACTGGC 364784 33 100.0 34 ................................. GACAATGTGAACGTCCTCATGGCCAACGCGCTTG 364717 33 100.0 34 ................................. ACCGACCGGCAGATAGCCGACAGCCTGGAAGCCG 364650 33 100.0 33 ................................. CCAAATTGACAATTACATACTACCGCAACTTGA 364584 33 100.0 35 ................................. ACCCCCCAACGGCAGCATGGCGTTCAACGCCTCCG 364516 33 93.9 0 .............................G..C | ========== ====== ====== ====== ================================= ==================================== ================== 88 33 99.9 34 GTCGCTCCCCGCAAGGGGAGCGTGGATTGAAAT # Left flank : TACGATGGAGGTTGCAGGGCAAAGGCGATTACGTAGGGTCGCGAAGGTGTGCTCAAAATTTGGTCAAAGAGTACAAAACAGCGTTTTCGAATGTGAAGTGACTCCTGCGGATTATCTTTTGCTTAAACACGATTTGTTCGAAATCATGGATGAGGAAGTGGATAGTTTAAGGTTTTATAATCTTGGGAGTAAATACTCGAATAAAATAGAACACCGAGGTGTTCAACGGCACATACCGGTGGATGGCATTATGATGATCTAAGGTTTCGGGACCAGATGGGAAGCGAAACATTACGGTTGTGCGGAGGTGAAGCTGTCATAGAAATCCTGGGATCTTCGCACCAAGTTTTAATATGAGCTAAATGGTTTTTAGTAATTGCGCCTTATTTGTCTTAGACATTTTATGACAAAAGCGTCAATTCTCTGCCTCTTATAGGTAGAATAAAGGAATAGAGATGGATTCGTGTCTTGATTTCTGAGATTATTTGTCCATTTCTGCG # Right flank : CTGATGCTGATGACTATGTGGCTAGTGTCATGATGAATTTTTTCACAATGGATAGACTAAAAATGTCAGTCCTCCAGTGATTGATCGTTTCTGCTGGGTACGATTCTGATTCGCATAAATCATGTCAAGGGGTCTTATCCTAATTCAGCAGATAGATTGGAGCTTATCTGAAGGCTTACTGTTGGCTTACGAGCAGTTTCGGTGAATCTGCATAGAAACCAGACGTTCTCTTTTATACTCTTCTGCATTTTTTACAGTGCTGGTAAGAGATGCGAGATTTGCACAACAGTTATGGTCGGGAAAGCTAGTCGGAGATGGTGCCGAGTCATGTCGTACGCTGAGAAATTCAGACAAAGATTAGCAGCTAGTAAGATTCAAAATAGGCACAGAGAAAATGGCATGGTGAACGAAATAATCAGCGTGTCAATCATCCAGTCCGTAGGACTCACTGGTGATATCTCACATTAACAGAAACGCTATCGACTTGTTGAATCAGCATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCAAGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //