Array 1 162682-160778 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPMD01000002.1 Salmonella sp. S047_66759 NODE_2_length_684592_cov_142.465000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162681 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162620 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162559 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162498 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162437 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162376 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162315 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162253 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162192 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162131 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162070 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162009 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161948 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161887 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161826 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161765 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161704 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161643 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161582 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161521 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161459 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161356 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161295 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161234 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161173 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161112 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161051 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160990 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160929 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160868 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160807 29 96.6 0 A............................ | A [160780] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180306-178813 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPMD01000002.1 Salmonella sp. S047_66759 NODE_2_length_684592_cov_142.465000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180305 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180244 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180183 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180122 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180061 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180000 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179939 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179878 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179817 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179756 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179695 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179634 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179573 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179512 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179451 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179390 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179328 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179267 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179206 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179145 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179084 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179023 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178962 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178901 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178840 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //