Array 1 66048-64370 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADARA010000014.1 Pectobacterium punjabense strain P9A19a contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66047 29 100.0 33 ............................. GCGTTACATCAATACGTATTGCGGGTGCGTTGC 65985 29 100.0 32 ............................. TGCGGGTTTTCTCAGTAATAAATGGGAGTTTT 65924 29 100.0 32 ............................. CAATTCAACCGTGCTTTCGCAGTCGTTGCCCC 65863 29 100.0 32 ............................. GCTCAGTAGCACAGTCCGCAGCGCGTAGTAAT 65802 29 96.6 32 ............................T TTGTGCCACTCAAATACGCCAAATTCAAACCC 65741 29 100.0 32 ............................. CGCTCGTTAGGGGTTAGAGGGAAATAATGAAA 65680 29 100.0 32 ............................. ATATTATCGACCCAACCCCCGAACCAAAAGAT 65619 29 100.0 32 ............................. GGTCTTTATCATTGAATGCTAGCCAGAGAAAA 65558 29 96.6 32 ..A.......................... AGGTTTGTTTAACCCGGTGCCGCCAAAGAAAA 65497 29 100.0 32 ............................. AAATCCCAAGGCTGGATTAACCGCCTGAAAAC 65436 29 100.0 32 ............................. ACGACCCTCCTGTCGGCAAGTTCTCTGCCACG 65375 29 100.0 32 ............................. CGGTTTCTATTATTAACGAAGAGCGAGATAAA 65314 29 100.0 32 ............................. CATTCAGGGTAGGAGATGAATTCCTGATTACG 65253 29 100.0 32 ............................. GATGACTTCACCAACTCCTACGCTAAAATTTC 65192 29 100.0 32 ............................. TGGCTCTGTTGCTCATCAAAGAAAAACGCCCG 65131 29 100.0 32 ............................. TAATAAAGGTTTTCGTTAACTTTTGATTTCAA 65070 29 100.0 32 ............................. AAAAATTCAGTCCTTATGAACTTATTATCGAA 65009 29 100.0 32 ............................. TTTTTCTTCTTGCTCCATCAGATAACGGGTAT 64948 29 100.0 32 ............................. ATAATGCGTCTTTAATAAAGGAGAGCATGACA 64887 29 96.6 32 ............................A GTGGTGTGATGCATGGTATCTTCTGCGCTGCC 64826 29 100.0 32 ............................. TGCCGTTGGCGGTTTTCAGTAGTCGCTGCTGT 64765 29 96.6 33 ............................A GCGCAGTAAAGGCGCACATCACAGCGTTAATAA 64703 29 100.0 32 ............................. CGAGTTATACAACTCTAAACCTAAAACCCTTT 64642 29 100.0 32 ............................. TAAAGTGCGGCTAACTTAGCCACACTTGATTT 64581 29 100.0 32 ............................. CGCCTCGCCAGATCGCTTCCTGATACAGGAGC 64520 29 100.0 32 ............................. AACCCTGTGTGTCGCAATGACAAAGCGTTGCT 64459 29 96.6 32 ................T............ GTCTGCGCCGCCCGTTGCAGGTGTGCTCATAA 64398 29 93.1 0 ............T..............G. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCAGCTAATTATTTCCTGAATTACTTCACTTTAGTGAATATGTACTGATTACCTTCCATTTATGCCAATATATTTGTAATCATTGAAAATAGAGTGTGAAAATATTTTCGTATTTATGCGTTATATCGATATGAAGTTACGAAGAAAGTGTTAACCATTGGCGTATTACCGCATCATAAAAAATGAAAGTATAATCCTTGCTGTATCGCGCTGTGTCTAATTCAGTGACGTGATGTTTTTTCAGATGCTTGATATCAACGTGGAGGAAGCATGTATATCAGTCCTGAAAACAGAAACTTTGTCGCTGCGCTTACGTTGGTGATGAGTATCGCTAAATCTGGGGTGAAAACTGCCGGATACCGGTAGATCGGGGTGGCTCACGGTTACTCTCTTTTTCACCTTTTTAAAATCAATAAGTTAGCTATTTTTAACAACATGGAAAAATTGGTGGGATTTTTTCTGCTGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : TTATACCCCTTGTTGTATGTTGGTCTAAATATTCCTCGTGCGGAGTCAAATCCCGCTTCTGGCTGGCGTGATGGCAGATTGCGTGTCAGTATTACAGCATGCTGTTTTTGTGCTCACCGTACTGGTGAGGTACGATGCCAATAATGTTTGTCTTCCATACGTTACCCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCAAAGCGTTCCACAGAACATGCGGAAAAAGTGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGCGCTGTTCCTGCTGGTCAGACGACGCGCTATGATTTCACCCGCATCAGCCCTGCTGAACTGTATGAAACGGTTGGTAGCCTGGTTAGCAGCGGGCAGTTGGGGCGTGAAGACGGTTCCGCGCTGCTGGGTTTTATCTCGTCACCACGAGCGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCGATCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42265-42412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADARA010000013.1 Pectobacterium punjabense strain P9A19a contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 42265 28 100.0 32 ............................ ATGCTAACCATCTACATCACAGAGCTAATAAG 42325 28 100.0 32 ............................ TGACCACGCCGGGCACCCGACCGTATACCGGG 42385 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGCGATATTTGAAGAATGCTCCGGCAATATCCAAGGTGCTTTACGACAATAAACAGAATCCAATAAAAGGGACGCTCGGGACCAATACGTTTGTGGCACGCGTGCAGGGCGGGAAATTAAAGTCCAACAACGAAATTAGAATAGCGACGTTATTTCGTGATGGCCCGGAAGATTTTCTACGCATGATCGTGATACACGAACTCGCTCACCTCAAAGAAAAAGACCATAACAAAGCGTTTTACCAGCTCTGTTGCCATATGGACCCAGACTACCATCAGTTGGAATTTGATATGCGAATCTGGCTCAACTGGCGAGAAATGGATACCACTTCGGTCTAAAAGCCTCTTTTACTACCCAGCACAGCTACGTTCTTCTATTTCTATACTACCTGTACGGCAGTGAACACGGTTCAACGGCATTAACGCTTTATTGCTCTTTTCTAAGCTGCCTGTACGGCAGCTTAGAAAAAGCACAGACACCGTTACGCCGGGTGGCAACCC # Right flank : AATCATCTGTTTAATTGCACCAACTATCATCTTATTCACTGCCGTGCAGGCAGGTATTCTCGGGATAAATCGCTGGCGTCACTTATTGGGCGCTATTCCCCATTAAGCGTGACGACCAGCGAGCGGCTCCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATACCCTGCCAGGTGCCGATGTTCAGGCGCCCATTGGTAATGGGGATCGTCAGACTGTTACCCAACAGGCTACCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCGTAAACATGGCGGTAGTACGGCTCATCCTCCGGCACTAAACGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTTTCATTCATCGTTAGTGCCGCCGAGGTATGTTTGATGAATACATGCATCAGTCCAACGTTTATCTGGCGCAGCGCAACAACCTGCGCCAGTATTTCGTCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //