Array 1 58849-57259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKQE010000035.1 Amphritea atlantica strain C1R06 C1R06_C1R06_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58848 28 100.0 32 ............................ TCGACCACTTCACCTTTTAAACGCCACTTAAC 58788 28 100.0 32 ............................ AAAGCGATCGCCGCCGACAAAGAAGAGTTAGA 58728 28 100.0 32 ............................ TATTTTATGCTGTTTGCAAAGCATCGTAAGGG 58668 28 100.0 32 ............................ TTCCCGGTGAGTTATAGCTGCCCATTTGTCTC 58608 28 100.0 31 ............................ ATCGAACCGCAATACCAGCCCGCCTATGTGC 58549 28 100.0 32 ............................ TCTTCAATCGATTCGCGGATGTCATCCAGTGC 58489 28 100.0 32 ............................ TTGTCTTTGTGTTGCTCACAGTAGCCGTGTGG 58429 28 100.0 32 ............................ AAGCTGTGAACTAAACAAGATTTAAACCTTTC 58369 28 100.0 32 ............................ GTGGTATTGGCTAATTGATTGCACGCCAGTGC 58309 28 100.0 32 ............................ GCCATAGCCAATCACAAAACTATGATACCCCT 58249 28 100.0 32 ............................ TTATATGCACTAATTCTATCAAGGTTGTTATG 58189 28 100.0 32 ............................ AGCACTGCACCGATCAACCAGTTGTTAATATT 58129 28 100.0 32 ............................ ATCCAAGCACTGAATCGTGCCACGTGGTCGGC 58069 28 100.0 32 ............................ ATTACTATTACAGAGACTGAACTGACTGACCG 58009 28 100.0 32 ............................ TGAATTCCTCGTGTCCATGAACGGCTCTTTGC 57949 28 100.0 32 ............................ TACCCTACGATACAAGACTAGCAAGTACAACA 57889 28 100.0 32 ............................ TAAGACGAACCAAGGAAACGACCATGAACATG 57829 28 100.0 32 ............................ CGATAAACTCCTTTAAAAGTGGGGAGCTTTCA 57769 28 100.0 32 ............................ AAATTAATCAGACACTTATCACCACTCAACCA 57709 28 100.0 32 ............................ AGCGAAACCATGCGCTGGTTGGTTGCATCCTG 57649 28 100.0 32 ............................ GCAACACACCTCGGGCATACGCCTTCTTTAGA 57589 28 100.0 32 ............................ AAAATAGGACAATCGCCGGCGCGTATTGAGGC 57529 28 100.0 32 ............................ AGGCACCAGACCACCAGCGCAGCAAAACAGAA 57469 28 100.0 32 ............................ ACAAAAGGCCGCTGGGTTCGCGCAAGCCGAGC 57409 28 100.0 32 ............................ CGTATTACTAATCGAGGGTTTTAAGAGCCTAA 57349 28 100.0 32 ............................ GACCAAATTGTGCCGTTTTTTAACGCGTAGCC 57289 28 100.0 0 ............................ | AA,C [57265,57268] ========== ====== ====== ====== ============================ ================================ ================== 27 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTGCCGCACAGGCAGCTTAGAAAGTTTACCGCCTACCGTTTCGCTTTCTAAACC # Right flank : AAATTATTAAGTTTTAAGTGGAGCTGTTGTATGACTTGGCTCTGCACCAAAATCTACAAGGAATGGGGCGTTTTCACGGCCTATTTTTTCATGGGAAGTCTACATGGGTATTTCTGTAGACATAAAAAAACCGAGGGCTAAGTCAGCACTCGGTTGTCTATTTAGTAGTTTTGAATCAATGAGTTAAGTGGTACCAGTGGCCGGACTCGAACCGGCACGCTTTTAAGGGCGGGGGATTTTGAATCCCCTATGTCTACCAATTCCATCACACTGGCGCAGACACTTAAACTCTACATGGCTCTACATGCCATTTTTAACGCTTGAACTTAACAATTTACTATAAAAATCAAATTGTTGCAGTAGTTTTCTTGCTAGAGGGGTTGAATTTTGAATCCCCTATGTCTACCAATTCCATCACACTGGCGCAAACGTGGAGCGTATTATACGGTTCGTTTTCATTGGGTCAATGGGGTTCATGAATATTTTTTAAAATCATGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1348-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKQE010000037.1 Amphritea atlantica strain C1R06 C1R06_C1R06_contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1347 28 100.0 32 ............................ TTCAGGAAACGGCGACAAATCAACTTCATTTA 1287 28 100.0 32 ............................ GTAGTTTCAAGAATAGACGCGCCCTTGTTTTT 1227 28 100.0 30 ............................ ATTTTCTAGTAGGTAGGCGGCTGGGGAAAA 1169 28 100.0 32 ............................ CGCCGGAGTGCTGGGTGATACCGAAAGAAGTA 1109 28 100.0 32 ............................ AGTTTGGGGTCGATGTCGTCAAACCGGCGACG 1049 28 100.0 32 ............................ TGATAGCCGATGAACCAGACGACGAGAACACG 989 28 100.0 32 ............................ GGTTCGCCGCTTTGGTAAAAGTTATAAACAAC 929 28 100.0 32 ............................ GTGTAGCCCTTGAACCCGGTAAAAACGTGCTG 869 28 100.0 32 ............................ GGGTAAAAATGTGCTGCCGTTCCTCGTCGAGT 809 28 100.0 32 ............................ ATCACGGGCCTGTACCCACCCGCTTTCGCCGT 749 28 100.0 32 ............................ ATTCAACAGGAGCGCGAGGATCTAGCCAAAAC 689 28 100.0 32 ............................ GAAGCGGAAGAGCACGAAAGAGTTTCTTGAAA 629 28 100.0 32 ............................ GGTGGTTAGCTGTTAACACTGTTAACTAATCC 569 28 100.0 32 ............................ TACCCGTGATGTCCGAAGGTGTGGTCTACGTT 509 28 100.0 32 ............................ AAAAACGACATCAACGATATTAAAGATCCGGT 449 28 100.0 32 ............................ CGAACGTGAATACCGCAGCGAAACACAGTACC 389 28 100.0 32 ............................ TATAGCCTACCTAATCAATACCTCCAATAAAA 329 28 100.0 32 ............................ TCTTCAGTGCCGAACTTTCGCTGCCAGATCTT 269 28 100.0 32 ............................ TCTTCAGTGCCGAACTTTCGCTGCCAGATCTT 209 28 100.0 32 ............................ TCGTCAAGAATGGTAAGCAGGGGGTGCCTGGC 149 28 100.0 32 ............................ ATTCAATTCTAAATGTTTAAGTTTGATCTTTA 89 28 100.0 32 ............................ TCCTCTACTGGTTATTATCGGGGTGGTAGTTG 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 23 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTAGAAAAACTGACCCGAGAGCTGGACGCGTGGGAGGATGTTCACTGCCGCACAGGCAGCTTAGAAATCGCCGCTGGTCAGCGTCACACCTGCTTTCGAGTTCACTGCCGCACAGGCAGCTTAGAAAATCAGTTGTTAAAAGCTTTAAGCCTGGGAAATGTTCACTGCCGCACAGGCAGCTTAGAAATGAAAAAAGCCGATTGGTGGGATGCGCAATCGGTTCACTGCCGCACAGGCAGCTTAGAAAATGACTAACGAAGAGCTCACCATACAGCGTCAGTTCACTGCCGCACAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGCTTAGAAAAAAATAAACAGTGGTAGCGTAACCCTCACGAC # Right flank : AG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2469-1541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKQE010000037.1 Amphritea atlantica strain C1R06 C1R06_C1R06_contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2468 28 100.0 32 ............................ TGTTGTGGACTCTGGGTATGGCTATTGTGCCT 2408 28 100.0 32 ............................ TCTGCCCTGCGCCGCCTCATTCAAAATCAAAA 2348 28 100.0 32 ............................ TGCGCAACGGCACAATTTGACCATGCGATATA 2288 28 100.0 32 ............................ GAAATTCCTCAAGCGCGGCGCTAAATCTTAAT 2228 28 100.0 32 ............................ ATCACAAAAATCACAATGATGATGATGTGAAC 2168 28 100.0 32 ............................ GTCACGTGCTTGTAAATCCAGTTCATAATCAG 2108 28 100.0 32 ............................ AGAGAGAGAGGGGGGGAACACGTTTTTTAATG 2048 28 100.0 32 ............................ GATATCTTCCCCACGCTTTCGACGGTCCATCG 1988 28 100.0 32 ............................ GTAATAGAAAACTCACCAGAACCACTAATGGT 1928 28 100.0 32 ............................ ATGCCCCTAGTATCGTAGCATCCTTAGCTGTC 1868 28 100.0 32 ............................ AACTGACCCGAGAGCTGGACGCGTGGGAGGAT 1808 28 100.0 32 ............................ TCGCCGCTGGTCAGCGTCACACCTGCTTTCGA 1748 28 100.0 32 ............................ ATCAGTTGTTAAAAGCTTTAAGCCTGGGAAAT 1688 28 100.0 32 ............................ TGAAAAAAGCCGATTGGTGGGATGCGCAATCG 1628 28 100.0 32 ............................ ATGACTAACGAAGAGCTCACCATACAGCGTCA 1568 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACGCATCTTAAATCAATACAGCCAGTGCCGGAGGGTGCACCTCTTGTTGCGTTTGTTCGCAAGAATATAAAAGGGCAGGCTCGTATCGAAAAAGATATGCAGACTAAAGCGGAGCTTTGGGCAAAACAATCAGGACAAAGCATTGCAGACTGTCTAAAACAGCTTGAAAAAACCAAGCCAAAGGCAGAATCAAAAGCGCCTTTTATTTGGATGGAAAGCCAAGAAACCAAAGCGAGGAACCCCAAGGGCTCCGCCAGATTCCCACTGTTCATTGAACGAATAAAGGTTAATAACGCGCAAGAAGGGCTCTTTAACTGCTACGGCCTAAGTGCTTTAGGAGGAGATCAAGTTTCTACTGTTCCTGATTTTTAACCAAAAAAATAGCTCTTTAAAAATAAGTAATAAAAACAGACGGTTACAGCAAGGCTGAAAATAAAGGTATTTCTTGGTATTTTTATTTAAGTCTTTGTTGTGACTGTTTTTTGTTGTACATTTTTAGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGCTTAGAAAAAAATAAACAGTGGTAGCGTAACCCTCACGACGTTCACTGCCGCACAGGCAGCTTAGAAATTCAGGAAACGGCGACAAATCAACTTCATTTAGTTCACTGCCGCACAGGCAGCTTAGAAAGTAGTTTCAAGAATAGACGCGCCCTTGTTTTTGTTCACTGCCGCACAGGCAGCTTAGAAAATTTTCTAGTAGGTAGGCGGCTGGGGAAAAGTTCACTGCCGCACAGGCAGCTTAGAAACGCCGGAGTGCTGGGTGATACCGAAAGAAGTAGTTCACTGCCGCACAGGCAGCTTAGAAAAGTTTGGGGTCGATGTCGTCAAACCGGCGACGGTTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //