Array 1 4821-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCFX010000001.1 Pseudoclavibacter caeni strain DSM 26484 Ga0415219_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4820 29 96.6 32 ............................G GGCGACAATCAGGACAACGAGAAATGATGCGA 4759 29 100.0 32 ............................. TGGCCGGAGGACCCACTCGACCGGATTGAACA 4698 29 100.0 32 ............................. GCGCCGAAGTTTATTCGTTCGCTTGCCATCGA 4637 29 100.0 32 ............................. GGACCTGGCGTTTCTTTCTCCCTGCCGTTCAT 4576 29 100.0 32 ............................. CCGTCCTCCAGTGACGCCAGCTGCCGCTCGGA 4515 29 96.6 32 ............................T CATCGTGATGCGGTCGAGCTTGAGCTGATCAA 4454 29 100.0 32 ............................. GTCGCGGGCGGCGTCGCTGGGGCCACGGGGAT 4393 29 100.0 32 ............................. CCCGACTGGACAGACGAGCAGGTGACCGCCGA 4332 29 100.0 32 ............................. GGTGCCCGTGCCAACCTTTTTGCGGAGGTCCA 4271 29 100.0 32 ............................. GGTGCGACGTGCCTGTCCGCTTGATCGATCGT 4210 29 100.0 32 ............................. TTCTCGGTCTCGACAATTCCCGCGATCACCGC 4149 29 100.0 33 ............................. CAGACTGAGTCTTCACCCAGACGCGGTCACCGA 4087 29 100.0 32 ............................. CAGCGGTCAAAACCGGGCCGTGAAGCGATCGT 4026 29 96.6 32 ............................T ACGTGCTCGCCAAGTCAGACGAGGCAGAGGCC 3965 29 100.0 32 ............................. GTCGACCAGCCACGATCCTGCTGAGCGCAGCG 3904 29 96.6 32 ............................A CCCGGGTTAGTATTGAGTCATGACAAGGGAGG 3843 29 96.6 32 ............................G GCCTTGGCGGGTCAGCGCAGGCGACCGGCGAG 3782 29 100.0 32 ............................. TTCGACCACACGGTCGACTCTTTCTGCAGTGC 3721 29 100.0 32 ............................. TGGCAGGCCGGCATCAAGCCGGGCGCCCTGCC 3660 29 100.0 32 ............................. GACGTCCTCCCGGCACCGCAGCACCACCCTGG 3599 29 100.0 32 ............................. GATGCTGCGGACGGGTCGAGGAAGATGTGCTC 3538 29 100.0 32 ............................. GACAGCCAGTGGTGTGGTTCTCATCACAGTAA 3477 29 96.6 32 ............................G CAGTGATCCGGCGGCATGGTGTTCCGATGACG 3416 29 100.0 32 ............................. AGCGAAGCGCAGCGATGGCGAGAGTACGCTCC 3355 29 100.0 32 ............................. TCGACGCGCATCAGAACTCACCCTGCTCGATA 3294 29 100.0 32 ............................. TCCGGGGCCAGGACATCGGAAAGGACCCGACA 3233 29 100.0 32 ............................. TGTTGTCTCCGATTTTGACTGTTTCTGGTGCT 3172 29 96.6 32 ............................G AACGAATGGTTGCAGCAGTAACGACGCCGGGG 3111 29 96.6 32 ............................G TCTGGCAATGAGCACGGAGAGATCGGGGTCCG 3050 29 100.0 32 ............................. CCCCGTGATCCGGGGCGATCACGAGAACATGA 2989 29 96.6 32 ............................G ATGGCGACCCTGGCAAACATCTCCCGCACCGT 2928 29 96.6 32 ............................G GTCTACGGCCATCTGATGCCGCAGGCGCAGCA 2867 29 100.0 32 ............................. GATCTACGCCTGGCTCGCCGAGGGCAACATCC 2806 29 100.0 32 ............................. TGAAAAAACTCGTCAACGGGACCGAGGTCGAC 2745 29 96.6 32 ............................G TCGCTTGAAGTCGACCGCACGGCACTGCGCCG 2684 29 100.0 32 ............................. TGGATGGTGGGGGAATGATCAACGTATTCATT 2623 29 96.6 32 ............................G GTTCGTGCAGCGAATCTCGGCGATGAGCTGGA 2562 29 100.0 32 ............................. GCGGGTCTGCGGCCCGATCAGGTCATAGTCGG 2501 29 100.0 32 ............................. CCATCCGTCATCTGCTGCGCGCTCCACGTGCC 2440 29 100.0 32 ............................. GGATAAATAACGGATTGGACGATTCTGCGACC 2379 29 96.6 32 ............................G CGGCTCCTGTTCGTGGGACGTGGGATGGGATG 2318 29 100.0 32 ............................. ACTATCGGCATGAGGATCATGCTGTAGTGCCA 2257 29 100.0 32 ............................. TGCTCGATCGCACTGTTGCCGACACCGGCTGC 2196 29 96.6 32 ............................G GCCCACACGAGGGCGATTCGGCACAAGCTGTC 2135 29 96.6 32 ............................G CCGACGTAGTACTTGCGGTTGTGCGATTGCTG 2074 29 100.0 32 ............................. GCCGCCGTGGGCGCAAACCACACACCAACAAC 2013 29 100.0 32 ............................. ATCGCAGCCATGAAGCCGCCACTGTTCGCGTC 1952 29 100.0 32 ............................. CAGTGAGCCTCGCGTTAATCCCTCGCCGCTGA 1891 29 96.6 32 ............................T CACGGTGGTGCCGCCCCATGCGTTGATCTGGT 1830 29 100.0 32 ............................. GACAGATAAGTGTCAATCAAGGGGGCGGCATG 1769 29 96.6 32 ............................G GTCTGATTGAGAGGATGGCCCGCTATCAGGGT 1708 29 96.6 33 ............................A GGGCAGGTCAAGGATCCGCCGGCCGGAACGCAA 1646 29 100.0 32 ............................. GCGACACCGTCAGACGGATCATACGAGTTAAC 1585 29 93.1 32 ...C........................T CTCTGTCGTGCCGACACCTGGAACCGTTTCCG 1524 29 96.6 32 ...C......................... GCGACACGCCCAGGCACGCTAGGAACCCCGGC 1463 29 93.1 32 ...C........................T TAGTCCCCCGCGTCACCGACTCCACGGTGACG 1402 29 93.1 32 ...C........................G TTGCCGCATTTTTGACGACACGCGGGCAAAGA 1341 29 96.6 32 ...C......................... TGTCTGCCCCGAAGTTGACACACCCCGGATGT 1280 29 96.6 32 ...C......................... CGGTCCGAACGGAAACCACCCCGTCACACCCG 1219 29 96.6 32 ...C......................... TTCGTCGGGGTCTTGATCTTGGATCCGAGGCC 1158 29 93.1 32 ...C........................G ATTCTCGACGCTGCTGAGCTCAAGGCTCGGCA 1097 29 96.6 32 ...C......................... GCCCTGCTGGAGGCAGTGAAGACCAAACTCGC 1036 29 93.1 32 ...C........................T GCCACGAAAGCGGCCGAGCGCGGGCACGCGGG 975 29 96.6 32 ...C......................... CTCGACCCCGGTGCGGCGGACGTGCACACAAC 914 29 93.1 32 ...C........................G TTGCAGCATCCGGGTGAGGAGCCACCGAAACC 853 29 89.7 32 ...C......................T.A CTGCTTCTCACCCCCGATGACCGTCTCAAGCC 792 29 96.6 32 ...C......................... TCGAGGGTGACGTCAACCGGAATCTCCGCCAT 731 29 93.1 32 ...C........................T GCGTGCGTGGCGGGCACATCGACCACAGTGCC 670 29 93.1 32 ...C........................G TTCGTGTTGGTGTCGCTGGCGAATTATGCCGA 609 29 96.6 32 ...C......................... TGGGCAGCGGGGTAGCGGACAGTGCGCCCCCA 548 29 93.1 32 ...C........................G AGGGTCTGTGCCGCATGCCCGGTCAAGGCTGA 487 29 96.6 32 ...C......................... ATGGCAAGCAAGCTCGTCATCCGAGACAACCT 426 29 93.1 32 ...C........................G GCAAGTAATCGCCAGTCACAGCCAGTAGTAGC 365 29 93.1 32 ...C........................G ACCGTCAAAGTCCAGGAGCTCAAACGGTGTCA 304 29 96.6 32 ...C......................... GCCGTCCGGGCAGAAATGGGGGATGAAGGGTT 243 29 96.6 32 ...C......................... GCATGACTCTCCAGGACGCCGAGAATCACCCG 182 29 96.6 32 ...C......................... TGCCCGTGGACAGAAACGAGAAGGACGAGTAG 121 29 93.1 32 ...C........................T CAGGCAGGAATCCGCCGACCCAATCGAAAATC 60 29 96.6 0 ...C......................... | ========== ====== ====== ====== ============================= ================================= ================== 79 29 97.5 32 GAGTTCCCCGCGCGAGCGGGGGTGATCCC # Left flank : ACCTCTGCGGAGTCGGAGAGATGTTGCCAGAGCTGAAGATACGAGGTTTGGTCGGCGGGGTCGTGCAGGTTGGTCTTGGCCCAGACGGACCGTGCAGCCGCGGACAGCTGGCTCGCAGATGCCTGTCGGTGGGTGCCGGTAGCGTCGAGCATGTGATTCCCCCAGAACTATCGTGCTGAATCAGTTCGATAGTCACAGTATGGCATAAGAATCGAGTGACCACGAGATTTATCTCCTACGTTGCGGATAATGCAGGAGAGATGATCGAGTGCGCCCTCGAAACCCCCGCTGACGCGAGGAACTGTTGCGCGAGACTGATCGCCTACGGGATCACCCCTGCGTGATGCAGGGCGGCGCATTTGACCAGTGTACGGATGCTGTCGCCTGAATTCTGACTCCGCTTCTTCGTGCACCTGGATAAGGCGCTCAACCCTGAAGCCATTGTCACAACTGAATCTTTTGTGCACTTCAGATTCGGCTCATGTCAGTAAACTACTTGT # Right flank : CAAACCTCCGTACTATCCGCGTACGTCATGCA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGGTGATCCC # Alternate repeat : GAGCTCCCCGCGCGAGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2070860-2063566 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCFX010000001.1 Pseudoclavibacter caeni strain DSM 26484 Ga0415219_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2070859 29 100.0 32 ............................. TGGTGGTCCTGGTATGTTGTCGGCCCGTTCCA 2070798 29 96.6 32 ............................T CGAGTGCATGCTGAGGGGCCTCTGGAGCATCT 2070737 29 100.0 32 ............................. GACAGGTGACCCAGTCGCCCTGGCGGGCTCCA 2070676 29 96.6 32 ............................G TCATTAGCGAAGGCGATGGCATCCGCTTCAGT 2070615 29 96.6 31 ............................A CCGGGTCGGCGAACACGACACCCTCACCGGT T [2070589] 2070554 29 100.0 32 ............................. TGTTTTCTGCTGCGCATCGAGGACAACATGGA 2070493 29 100.0 32 ............................. GCGGCAGCAAACACACGACGCAACGTGTCGAA 2070432 29 100.0 32 ............................. TCAACCCCCGTGTGGCTACATACAGCCGGGTA 2070371 29 100.0 32 ............................. CAGGTGATGATCTCCGGGTTCCTGCCGGCAAG 2070310 29 96.6 32 ............................G TCGGCGCCTTCCACCAAGTCATCGTCGACGAG 2070249 29 100.0 32 ............................. ATGGTGGCGTTCTTCACCCCGATCATCCAGAC 2070188 29 100.0 32 ............................. GAGCCGCGTGATAGAGCCCGAACCCCAGTAGG 2070127 29 100.0 32 ............................. GTGCTGGCGACCGTGATATTTCCGAGACGACA 2070066 29 96.6 32 ............................G TCGGACACTGCGGCAAAAGTGATGGGCCGTTG 2070005 29 96.6 32 ......................C...... GGTTCCCCATTGGATGGGCTGTTCGCCAGGAT 2069944 29 100.0 32 ............................. GATCGATGACGATGCCGCCTACCGGTCATTGC 2069883 29 100.0 32 ............................. CTGGCTGGCACGGTCCCGCCGGCGGGCCATCA 2069822 29 100.0 32 ............................. CGGCGTTGCCGCTCCACAAGGGCTGGTTGGTC 2069761 29 93.1 32 ...T........................T TAGGGGGGCCCGGTTCACTCCCCGGGCGGAGT 2069700 29 100.0 32 ............................. ACCAGCAACCCCCACGACAAGACCGCGAGACC 2069639 29 100.0 32 ............................. GCGCTGCTGGAGGCCGTGAAGGCCAAACTGGA 2069578 29 96.6 32 ............................G AACACAATTGGCGCAGTCAGAGACCGCCTCGA 2069517 29 96.6 32 ............................G ATTCACCGGACGTTCTGGATCAGTGTCGGGGA 2069456 29 100.0 32 ............................. GGGGTGAGTACCGGTGACCTATCGGATTCTTG 2069395 29 100.0 32 ............................. GCGCGCGCGCGCGAAAGCGACGATGACCAAAA 2069334 29 100.0 32 ............................. GAAACAGGCTCTCGATGACTCCCGCGAAGTCC 2069273 29 96.6 32 ............................G CGCTCAGGCATCGGGCTCTCAACGCTGTCGCG 2069212 29 100.0 32 ............................. TGCTCCGCTCTGATCGCGTTGTCGCCGATCAT 2069151 29 100.0 32 ............................. GCATTCGACGGGCTCGACAAGGCACTCGTCGG 2069090 29 96.6 32 ............................T CCAGGCGCTGCCGCAGCTGATACAGGCGGCGG 2069029 29 100.0 32 ............................. AGCGTGTCGACGCCGCCGACTGCCTGCTCCCA 2068968 29 96.6 32 ............................G CTCGGGGTGACAGTGGATGGGCAGCTCGGCCC 2068907 29 96.6 32 ............................T GGTCCTGGCATGATGGGTCTCCGTTCGTGCTC 2068846 29 96.6 32 ............................G GTTGGTGTCGAGGTTGCCGGCATGTCCAGAGA 2068785 29 100.0 32 ............................. GACGAGAACTCCCCGCCCTGTCGGCACATGCA 2068724 29 96.6 32 ............................G CGCGCCAGCAGCAGCGACGGCAGCGACGATGT 2068663 29 100.0 32 ............................. CCTTCGACCGGGGCAGTGACTGTCGTCATCAG 2068602 29 100.0 32 ............................. AATGGCGAGTATGTGCGCTCGGCGGGCGTGTG 2068541 29 96.6 32 ............................T GTGATGCCGCCGAGCGTCACCTGCGCGATCTC 2068480 29 93.1 33 ......T.....................A GGCCGCTGGCGGGGTCGAGGTAGGTCTCGGTCC 2068418 29 100.0 32 ............................. CTACGCGCAGCTCATGCAAGAGACAGGACTGG 2068357 29 100.0 32 ............................. GACACCACCTTTGCAGGCACCGCAGTCGAGAT 2068296 29 96.6 32 ............................G GGGAAACGATGACTGTCGCCGAACTTGGGGAG 2068235 29 100.0 32 ............................. TGGTGGACTCGCTGGCCGTCGACCTGCGCACC 2068174 29 100.0 32 ............................. GCCTCGATGCGTGCGGCACTGTCGGCGGCACT 2068113 29 100.0 32 ............................. TGCCGATCGCCCTTGGTGAGCACGGCGTTGTC 2068052 29 100.0 32 ............................. GTCGCCGTCATGACCGTGCCGGGCACGAGGAT 2067991 29 100.0 32 ............................. CCGACGACGGAGACGACGAGGAGGCGTAGACC 2067930 29 100.0 32 ............................. GCCCCGTGAGCGGAGGCGGTCTGCTCGGTCAG 2067869 29 100.0 32 ............................. AACACGGCCGCACCCACGGCTGGTGCGACGGG 2067808 29 96.6 32 ............................G TGCGGGGTCTGTTTCATGCTGGTACTCCCTGG 2067747 29 100.0 32 ............................. GCACCGGTGAACGTTTCGCCGGTCGCCTGCGC 2067686 29 100.0 32 ............................. ACCCGGCCTTCGGCGTCCGTGCATACCTGACC 2067625 29 96.6 32 ............................T GCCCCTCCGCCGTCTTCGACAGTCACTGTGAG 2067564 29 96.6 32 ............................G CTGATGACCTGGTGCTGGCTGCACGTGCGAAG 2067503 29 100.0 32 ............................. CGCGCCAACCCGGAACCGGTTGCACGCATCCT 2067442 29 100.0 32 ............................. GACCAGGCATCAGGCCACCTCCAACACATCTG 2067381 29 96.6 32 ............................T ACCAAGGTGGGGCGGCCGACCAGCACGCACGC 2067320 29 96.6 32 ............................G CAGCTGGAAGGAATCTCACCCCGATCCAGGAC 2067259 29 100.0 32 ............................. TGCGCTGCGCCGCCGGCATCAAACGACACCCC 2067198 29 96.6 33 ............................G TGGCGGCCGCATTCGAGGCACAGGACCCAGTCG 2067136 29 100.0 32 ............................. GAGCCCTACCGTGTCAGAGGGGAGCTGAACTG 2067075 29 100.0 32 ............................. CTGAGTGTCGGAGTCGATGAGTGTGGCGATCA 2067014 29 96.6 32 ............................T GAGCAGCCCAGCCCCGTGCGCTTTCCCTCGCC 2066953 29 100.0 32 ............................. GTGCAGCTGTAATTGGTCTGGCGGTTCGGATC 2066892 29 96.6 32 ............................T GAGTTCTGGTAAATCAGGCACTCTGAGACGTC 2066831 29 100.0 32 ............................. TGCACCGTGGACAGCACCCGCCGGCCCCGCTC 2066770 29 96.6 32 ............................G GTGACCGACACCATTGGCGAGTCGTTCTCACT 2066709 29 100.0 32 ............................. TGCCCTGATGTGCTGTCGGTCGTGACGGCATG 2066648 29 96.6 32 ............................G GCTGCCGTTGACCTGCTCTGGTCTGGCGGCGC 2066587 29 96.6 32 ............................T GTCTTGGTTCAGCTGCGCAAGCGCGACGTTCA 2066526 29 96.6 32 ............................G GGCGCAACGGTTTTCGGCGAGCGGTTGAGATC 2066465 29 100.0 32 ............................. GTGATCGAGCGCTTGCCCTTGGTCGAGGCCTC 2066404 29 100.0 32 ............................. CGCTGGATCGATCAGCAGCAGCACGCCGCCGC 2066343 29 100.0 32 ............................. TGCCCGGCGCAAAGGAGAAGGAGGACGAGTGA 2066282 29 96.6 32 ............................G TGAAGGATCTGGGGGTGTCTGTTCCTCCCTCG 2066221 29 100.0 32 ............................. TTCCCGTTGCTCACGATGCCCGCGCACGGCAC 2066160 29 96.6 32 ............................T AAGCCGCAGTAGAGTCACCTGCTAACAGCGGG 2066099 29 96.6 33 ............................A CCGCTCATGTGCGACGACCTGCGGGCACAGACC 2066037 29 100.0 32 ............................. TCGTGCGTCTTCGCTGGCGAAATGAACCTCGA 2065976 29 96.6 32 ............................T CTTCCAGTGCGTCGATGCGCTCGGAATGCTTC 2065915 29 100.0 32 ............................. CTGCCGCCGAGCATGATCGGCGACAACGCGGT 2065854 29 96.6 32 ............................G ATCGGGCGATTGGCACCTGGGCCGTTGTAAAC 2065793 29 100.0 33 ............................. CTGTCAGGTGGCCGTGCCCCTGAACTGCCTGTG 2065731 29 100.0 32 ............................. TCTCGTGCCTCGCATGATGCCACGGTGAGAGC 2065670 29 96.6 32 ............................G GGCCTCGACAAGCCACTCAAGGTCGCCGATCA 2065609 29 100.0 32 ............................. GCACAGCCCCGTCGAAGGCGACGATCCTGGCC 2065548 29 100.0 32 ............................. TTCTCCGCCGCTGTGCGCCCGTCCAGTGTGCC 2065487 29 96.6 32 ............................T TGTGTGACGACCGCGCCGACGAGCGACAGCCC 2065426 29 100.0 32 ............................. TCGTCACCCGGATCTGACGGCCTCGGCGGCGT G [2065404] 2065364 29 100.0 32 ............................. GGCACGTTCACGCAGAAGGACTACACGTACAC 2065303 29 100.0 33 ............................. GACTCTTCATCCCAGATCCCCAAGCACTCGCGT 2065241 29 100.0 32 ............................. GCTGCTTCTGGTGCGTCCTGCGGGGTGCCGAG 2065180 29 100.0 32 ............................. GGGTCCAGCACACGCCCTGACCCATACCACGT 2065119 29 100.0 32 ............................. AACTCCACAACGGCATCAAGGCTCGTGCCATG 2065058 29 96.6 32 ............................T CATGCAGCTGCTCATAGCACGGATGATCCTGA 2064997 29 93.1 32 ..........................T.A GGGTGCAGGTCGAAGATGGAACCGTTCAAGGA 2064936 29 96.6 32 ............................T AACGCTCGGCAGAATGGTATGGCGGACACGTC 2064875 29 100.0 32 ............................. GTTCCGCCAGCGGCAAGTGCAGCCCCGCCGAG 2064814 29 100.0 32 ............................. TCGGTCCGAAAGTGCGCGAGGCTCGCCTGAGC 2064753 29 100.0 32 ............................. CAGCCCCAGTGCAGCGGGCCGGCGTAGGGGAA 2064692 29 100.0 32 ............................. CGCTCGTGGAGCTCCTCCGCCAACTGCTGCTC 2064631 29 100.0 32 ............................. GCGACATACGCGCCACCCACAGCGAGCGGTTT 2064570 29 96.6 32 ............................G GTTCAGGAGCATGATCGTGCGAAGCCTCGTAC 2064509 29 100.0 32 ............................. GCCCGGAGATTGGGGTGCTGCCGCGCGGCGAC 2064448 29 96.6 32 ............................G AATCGGACTTCCCCTACAACCATTCGCCCGGC 2064387 29 100.0 32 ............................. GTGTCTTGGTTCTGGGGGCCGCGTTCACGCGC 2064326 29 96.6 32 ............................G CGACTCAGCTTCTTGATGCCCCAAATCAGCAC 2064265 29 100.0 32 ............................. GACCTCGACAACGGACGCACCATCTGCAGAGA 2064204 29 100.0 32 ............................. GGAGAGCACCCAACCCCCGATGGTGGGTGTGA 2064143 29 100.0 32 ............................. CGCAGTGCCGAAGACAGCTGCCCCGAGACACG 2064082 29 96.6 32 ............................A TCGAGAACTCTGCGACCTCGGATGGCTGGAAG 2064021 29 96.6 32 ............................G CCGCCCGTGTCCGAGCCGGACTGTTTGACGAT 2063960 29 96.6 32 ................T............ GCACTGCCGCCGATGCTGGTCACGGATGACGG 2063899 29 96.6 32 ............................G CGGGTGAGTGACATGACCCGCTTCGACAAGAT 2063838 29 100.0 32 ............................. GTGAACGAGGGCGGGTTGTCGTACGAGGTTTC 2063777 29 100.0 32 ............................. GCCGGGCGGTCGTCTCGCTGACCTCCAGAATC 2063716 29 100.0 32 ............................. CTCGACCGGATCGCATGTGTCAGGAATCTCAG 2063655 29 100.0 32 ............................. GCGAGGCCGGCCAGCCAGGAAACCAAAACGAT 2063594 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 120 29 98.6 32 GAGCTCCCCGCGCGAGCGGGGGTGATCCC # Left flank : A # Right flank : TTTCTGTTGGTCGACGGACTCGCCAGGTTATGGGACTCTTCGGACATCCGGTGGGGGTCATGGGGTGAGTCCGCCGGCGGCGAGGAGCATGCGGAGCCGGTAGTTGTCGCGGTTGCGGAAGCCGCGGGCGTGGCGATGGTGCAGCTCGATGATCCCGTTCACGGCCTCAGTTCCGCCGTTCGATGATCGTCCGGTCGTGAAGTAGGCCAGGAACGCGGCTCGCCAGCGGCGGAGGGTGCGGCCCAGGCGTGCGATCTCGGGGATCGGGCAGGTGTGGAATGTGTCGAGGACCTTCTCGGCGATCCGCCGCCCGGCGGCGAGGTCCTTCTGGTGGTAGGCGGAACGTAGTTGCTGGGCGCACTGCCACGCGACGAACACCTCGTCGTGGGCGGGGTCGGCCTCGATGGCCGCGACCAGCCGGGCGCGCTGCTTGTCGGTGAGGTTCTCGGCCCCGGCGCGCAAGATGGTCTGGATCCCGTAGAGCGGGTCGCCGGTCCGAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCTCCCCGCGCGAGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //