Array 1 1072704-1072928 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011058.1 Paenibacillus beijingensis strain DSM 24997 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 1072704 29 100.0 34 ............................. AAAGGGCACGAGCTACTCGGATACTTCAGGCGGC 1072767 29 100.0 32 ............................. GAGGCCCGGGCTACTTCTCAGTTTCAGCCGGC 1072828 29 93.1 43 ...................CA........ GGCTCGCGGGCTACTTGGCGGCTTCAGACATCTATACGACAGC 1072900 29 86.2 0 .........T.........CT.....G.. | ========== ====== ====== ====== ============================= =========================================== ================== 4 29 94.8 37 TTTACGGCACTATCCCATTAGCTCAGAAA # Left flank : GATCCCGAACATGCCGACCATAAGTCCGCTAAGCAGCGCGGAAGCCAGAATCACGAGAATAAGCGGGATCTGCGTCGTCTTATAGAGGAAATTAACTCCGACCGGTTCGACATTAATAACGGCAAAAATAGCAATTACAAGCGCAAATAATAAAGCAAGAATCAAAAACCATTGCGTTTTCATTTTTATCCCCCCCGATGGCCTTCATTACTTTACGGCCTTAAACAACCGATTCTTTATTTTAACCCATTAACGTTATGCCATACAATTCAAACATCGCCACATTTTTCAGGAATCGGTCGTTCCCGCCTCATTCACTATTAATGGGGACTGGATGAAAGTAAAAATATAACAATGCAGAGAAGTTACTTAGCGACCGATTCCACCGAGGCGCAGCCGGCCAGACGACGGTTGACTTCGTTCCATCCCGGCGGTTGACTTCGCTCCATCCAATGCTGCTTGCCAATCCGAGCGCATCGCCGCTATCGCCTGTTCAGCGG # Right flank : AGGGACACTAGCCAATCGGTGGCATTAAGCAGCATCTAAGTAGGACTGTGAGAAAGTATTCGACGGTTTCTCTCCTGAGTCAAAGGGATAGTATCCAAAAGGATCCATACCCGGCACCATACGTTGACGCCAAGGCCGATTGGAGAATAAAAACGGCAGGTCTATCCATGATCGGTAAAACATCTACGAGAATACATCATTGAGAAAACATCCTTGAGAGAACATCGACGGAAAAGGATCGAGAGAGAAAAAAACAGCCTTTCGGAACCGCGTCCATGCGCATGGTTCCGAAAGGCTGATCGTCCGGCTTGGAAGCCGTTCTTCCTACAAGTCGCTGTTTGTGAAGTAAAGCACCTGGGGACCGGCAGCGCCCCCTGTCAGGCTAAGGTTGGCTTGTACCGTTTTTCCTTTTTTGTTCACTTTAAACTCGGTGAATTTCCACGCTCTCGTATAATCCAAAAAGCTGCTTTGCAAAATACTGCCCGCCCATCCGATTACGT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTACGGCACTATCCCATTAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 3225451-3225089 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011058.1 Paenibacillus beijingensis strain DSM 24997 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3225450 32 100.0 33 ................................ GTCCCAGGTCGTGACGTATATCTTTCTACTTTA 3225385 32 100.0 34 ................................ GAATTTAAAAACCTGCATGCTCATCAGGTGGAGT 3225319 32 100.0 34 ................................ CTCTAACGCTTCCCTTTCGGTCCTTAAACGCGCA 3225253 32 100.0 36 ................................ GTCGTAATGGCAACAGGCACTTCCCCAGCCGAAGCG 3225185 32 100.0 33 ................................ TGCATACGGAAGACAAAATTACTCTCCGGCTGT 3225120 32 93.8 0 ...........C.......T............ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 99.0 34 GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC # Left flank : CGAGTCCACTCATAATAACCGCTTCGAGATACTTGAAACACGGCACACATCTTCGCGACGCGGAGCTTGAAGCGATGATCGTGGATGAAAGAGTAGATCAGCGCCGGTCTTTTGCAAAGTAGTGCATCGCCTTTTTTAAAATTTCATTTTCCTCCCGAAGCTCTCGGAGTTCTTTCTGTAAATCACGAAGGGCATTGTCGTCAGGTTTTAATTGCCCGCTGCCAGGAAAGGCATTCGCCCCATCCTGCTTGAATTCGGCCAGCCAACGATACACCGTATTCTCATGGAGACCTAATTCTCGGGCTACCTGCGCCACCGTTTTTCCTTCTTCTTGAATAAGTCGTACGGTTTGGATCTTGAATTCCTTGTCATACTTTTTCGTCATGTCGGACACCTCGATTATGAATGCATTTATTGTCGCACTCTCGGTTCTCCGTGTCCAGATTTCAGTCTAGCATCATTGAAACTTCCATTATCTCATTCAACTCTCTACGTTTCTG # Right flank : AGATAGCTCAATTGTAAGCGAAGCAATCTTTCCCATCGCTGCCCGTACGGGAGCATCACTTAGGAGCAAGGCGACTGCATGCATTCACCATTAATGCCTCTGATCCTGTATTTGTGAATACGGATGTAAGACGGAGACCGCAATCAACCTGGAGAGAACGCGCATTTACACCCTCTCTTTTTTATTTTCTGTAAATAGTTTACAACTATTCCCGACAAGTGGTAAAATTTTCTTGAAAGGTGGTGATTAGAGATGGCTTATTTCAATGAAATCAGGACCCCCTTGAAACCGATCGGAATCCGCTTCTTCAGATGTGTGCCGCATCGAATTGCCATCTTTACGGGCTTCAGGAATCGCCAGTTGTAGCTTTTCAGGGAATTGAATCACTCCCCCATTTATTTGGACATAAAGCGGAAATCAGCGATACCGCACATTTAGGCTCCGTTCGACTCAGCCCGGTTATATTCGTTCCGGATGAGGGAGTGATGGATGCCAGGTTA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3235568-3237445 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011058.1 Paenibacillus beijingensis strain DSM 24997 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 3235568 33 100.0 32 ................................. CAACAGACCTGTTAAACCGATACGTCGATGGA 3235633 33 97.0 32 ................................G CCATTTGCTCCATGACGTGAAGCAGCTCCTGC 3235698 33 97.0 32 ................................T TCAGAACCCGATAGGAAACCGCCGCATCATTC 3235763 33 97.0 34 ................................T TTTTTGTTGCTTCAACCATAAAATCACCTCGTAT 3235830 33 97.0 33 ................................C TTCCACAGACAACAAAGCGACCAAAAAACCGTT 3235896 33 97.0 31 ................................G CATTGACGTGATCGTGACCACCGGATTCAAC 3235960 33 97.0 33 ................................T CCCGTCTGCAGCAATTGCAGGGACAAGAAACGA 3236026 33 97.0 33 ................................C TTTTTGACCGGCATACAACCGGACCATCCGATT 3236092 33 97.0 33 ................................G TCCCTAACGCAAAAGGAGCCACAACGACGCAGC 3236158 33 100.0 33 ................................. TCCATCAGGATTAGCGCATTCTTAACCCGTCCC 3236224 33 97.0 33 ................................T TCTCCGGTCACAACTAAATATTATGACGTGACA 3236290 33 97.0 33 ................................G TATGAATCGAATCAATCAAATGTCGTGACGGCT 3236356 33 97.0 33 ................................T ACTTTTTTTTAGGAGTCCGCCAAGATTGCGGGC 3236422 33 97.0 34 ................................G TGTTCACCTGCTCCGCGATGCTGCGGATGATATT 3236489 33 97.0 32 ................................G GATTGCGTTTCTCCAACGCGTATTCCTTACCG 3236554 33 97.0 33 ................................G CCAAATCGTCAATGAAGTTCTGACGCAGTTCCC 3236620 33 100.0 32 ................................. TCTGAACCGCCTCCTTTAATACAATTGTATCA 3236685 33 100.0 31 ................................. TTTTACGTACGTAATTTAAAACCTTCGTCAT 3236749 33 100.0 34 ................................. GGTTCAGTTACTGGAACGCCTGGATCAGCGAGAC 3236816 33 100.0 33 ................................. TCCCCAAATCATAGTAATTTGGCAACATTATAC 3236882 33 97.0 32 ................................T CGTACTCGTACAGGTTATCGATTCCATATTGC 3236947 33 100.0 33 ................................. GCCGTATATCGCGTTTAAAACGAACGTGTTGGT 3237013 33 100.0 33 ................................. GGAGGCCCGGAGGAACCCCGGGAAACGTCTCAG 3237079 33 97.0 33 ................................T TTTAGGAGGAGGTGAATAACATGGGACAAATCA 3237145 33 97.0 35 ................................C TAAAATTTATTCAGAAGACGAAGAAAGCCGTGTCC 3237213 33 100.0 33 ................................. GTTAGAACAGAGGTTCTCGGAAAAATAAAGGAT 3237279 33 97.0 34 ................................C CACTAGCAGACATGGACATTAACAACGACAAGAT 3237346 33 100.0 34 ................................. CGCGCCTTGCGGACGTGTACAAGACGGCCACGAC 3237413 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= =================================== ================== 29 33 98.0 33 GTCGCATCCCTCGCGGATGCGTGGATTGAAATA # Left flank : ACCTTTCTTTTGGAAGTAGGTGAATGAGGGTGCTGGTTTTGGTTACATATGATGTAAGCACAGTCAGCAGTGAAGGTCAACGAAGACTGCGTCAGGTTTCAAAAATATGCCAAAATTATGGTCAACGTGTTCAAAATTCAGTGTTTGAATGCGTTGTAGATGCCGCTCAATTTGCTGTATTAAAGTTAAAACTCCTCGATGTTATTGATCAAGAGCAGGATAGTCTCAGGTTTTATCAATTGGGAAATAACTACAAGAAAAAGGTTGAACATTTGGGTGTAAAACAGTCAATTGACTTAGAAGGTCCTTTGATATTGTAGTGCGAACTATGGTGCGAATGTGTAGTGCACATGGAATTCCGGGGACATTCGCACTAGAAAACTGGATGAATTATCCTTTTTTGTTATGACTTTTTACGTATTGTTTCGAAAGTTTATTGATTTAGGCGTGTTTTTGATCACAAATATGGTATTTCAGGCATATTTGAATTAAAAATCGCT # Right flank : TAGAGAATAGAGCATTTGAATCGAAGCGCGGGGTGTCGCATTGGACCTCTGTCAATAAACTGGACACGGGAAAGCGAGAGAATTACGCCGCGTTTCGGCACATACGTTCGTATTGATTGGGCGTAAAGTACCCAATAGATGAGTGGATGCGTTTTCCATTATAAAAGCAAGCGATATACTCGAAGATCTTTTCTTTTGCTTCCTGTCTCGTTTTGAACTTCTCCAGGTAAATGAGTTCCTTTTTTAGCACGCTGTGGAATGATTCGACGCAGGCGTTATCGTAGCAGTTCCCTTTGCGGCTCATACTGCCAATCAATTTGTACTTCCGAAGACGATTCTGGTAATCCGTCGAAGCATACTGACTTCCACGATCGGAGTGATGCAGCAGTCCTGAAACGGGTCGCTGGCGGATGTAAGCTTGATCAAGTGCCGTGATGACAAGTTCTTTCGTCATTCGCTCGTCCATATGGAACCCGACGATCTTACGGGTGTATAAATCC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGATGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3238751-3239441 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011058.1 Paenibacillus beijingensis strain DSM 24997 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================================================================================== ================== 3238751 33 90.9 34 A..A............................A TCACGCCAAAATCTTGCTCGTATCCCCGAAAGTA 3238818 33 100.0 34 ................................. TCGACGCCTTCCGGTTTAAATAACGGTACTGCGA 3238885 33 100.0 34 ................................. CGTGAGCATAATAATAATTGTCCAGGTCAACGAC 3238952 33 93.9 31 .............T..................T TGCCTTCCGATCCATCAGCAGCACATATAAG 3239016 33 100.0 33 ................................. GGTGTAACTGACTCTTATGCGCGGTTGACTTGG 3239082 33 97.0 32 ...............................C. TGTCAATGATATTGTATTGACCGTAGGAGAAT 3239147 33 93.9 33 .............T.....T............. TCATCATCGGCTGCTGCCTCATTATCGCCGGCG 3239213 32 87.9 31 A....-......A...................C GCCAAGAGAAAACGTATGCGCGGATCAAAAC T [3239222] 3239277 33 66.7 100 ...........TAA.A....TCATG......CC TGGCTACGACGCTGGAAACAGATTGCAATGACGGTTGATCCCCTTACGGGATCGTGGATTAAAACAATGTCCATAACGCCGAGCAGAACAATACGAACGA 3239410 32 75.8 0 .....T....GT.T...-....C........CA | ========== ====== ====== ====== ================================= ==================================================================================================== ================== 10 33 90.6 40 GTCGCATCCCTCGCGGATGCGTGGATTGAAATG # Left flank : TCCAACCGTTCTTGGCGTTTGGCACGGTTGCTTTTTTGACGCCGAGTCCATTCATAATAACCGCTTCGAGACACTTGAAACACGGCGCACATCTTCGCGACACGGAGCTTGAAGCGCGATGATCGTGGATGAAAGAGTAGATCAGCGCCGGTCTTTTGCGAAGTAGTGCATCGCCTTTTTTAAAATTTCATTTTCCTCCCGAAGCTCTCGGAGTTCTTTCTGTAAATCACGAAGGGCATTGTCGTCAGGTTTTAATTGCCCGCTGCCAGGAAAGGCATTCGCCCCATCCTGCTTGAATTCGGCCAGCCAACGATACACCGTATTCTCATGGAGACCTAATTCTCGGGCTACCTGCGCCACCGTTTTTCCTTCTTCTTGAATAAGTCGTACGGTTTGGATCTTGAATTCCTTGTCATACTTTTTCGTCATGTCGGACACCTCGATTATGAATGCATTTATTGTCGCACTCTCGGTTCTCCGTGTCCAGATTTCAGTCTAGC # Right flank : ATTAACCAGACCGGATCGGACATAAAACAAACCCGTCAGAAACGATTCCTGACGGGTCTGTTTAGGCGAAACAGTTTAAAAGAAGCGAAGGTTTTCAAATCAATCAAGGAAAATCTCGAATTGCGGCCGTAAAGAAGCTGCCTTTGGAGGCGGCCAAGGACAGCTATAATAGGTGTCTATGCTGGCAGCTAAAGCTTAAGTCCCCGAGCCGGTAAGCTCGACGGCGCTGCGGACGAAGCCGCCCGAGCGGCTCAGAAGCGCCTTCGCTTCGTCGGCGCCGGTGCCGGTCAGCAGCATGACGATCGCCGTCTTGACGTGACCATCGGCGGCGGCGAAAGCTTGCTCCACCTGTACGTCGTCGGCGCCGGTCGCCATATGAATGATGCGTTTGGCGCGGTAGACGAGCTTTTCGTTGGACGGATTCAAGTCGACCATCAGGTTTTGATACACCTTGCCCATCAAAATCATGGAAGTCGTCGTCAGCATATTCAAAATGAGCT # Questionable array : NO Score: 4.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.64, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGATGCGTGGATTGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //