Array 1 469648-471321 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYO010000002.1 Listeria marthii strain UTK_C1-0014-E1 NODE_2_length_476669_cov_94.898809, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================= ================== 469648 36 100.0 30 .................................... AAGCAAGCTATTGTCTGCGTCTGTGAAGCA 469714 36 100.0 30 .................................... TTTATATCTTTGCTAACTAATCCGAAACGC 469780 36 100.0 30 .................................... ATTATCCGTCATCGTAACAACTGGTAAATC 469846 36 100.0 30 .................................... ACACACCAAAACAAAGCCGCACCGAATTTA 469912 36 100.0 30 .................................... CTTGTTGGTGACTTATCACCTGTAGCAAGT 469978 36 100.0 30 .................................... TTTATTAAAGACCGTAGTATCCATACGTTA 470044 36 100.0 30 .................................... AATTTCCTCTGGATTAGTCGTATTGTCATG 470110 36 100.0 30 .................................... GTAGGCTTGACAGCAATGTGGTCGGCATTG 470176 36 100.0 30 .................................... ACAAAGATGCTGTAATGCGCAAAACGGCTA 470242 36 100.0 30 .................................... ATAACCTCCGGCATATGTGGTAAATCGCAG 470308 36 100.0 30 .................................... TACAGAAAGAAAATAACTATTTGATTATCA 470374 36 100.0 30 .................................... ATCTAGCGCATACAGGTCTTCTTTACAACG 470440 36 100.0 30 .................................... AATGGCCGCGCCTAAGTCCCCATCCGGAAT 470506 36 100.0 30 .................................... TTCGCTTTGACGAGACTTCTAGCGATGTCA 470572 36 100.0 30 .................................... TTGGCGCAAACTCGTTGTCGTATTATCGCA 470638 36 100.0 30 .................................... CATTGCTTTTCATACTTTTTCAAAAGTTGG 470704 36 100.0 30 .................................... TTGTTATCGTTTTTCTCGCTAAGCTTTACT 470770 36 100.0 30 .................................... CGGGCATTATTCCAAACTCCTTCCGCACAT 470836 36 100.0 30 .................................... TTTAGCAGGTGGTGCAGATGTTCAGGCAGC 470902 36 100.0 30 .................................... ACAAGGGGCTATGAAGTCAAGAAATATGTT 470968 36 100.0 30 .................................... AGAAGCCCAATGGTGTAGTGCATTTCCTCC 471034 36 100.0 30 .................................... GCCAAAATCATTGCATCCTCGATCCACATG 471100 36 100.0 87 .................................... CAATGAAGCATGCTTTAAATACATCAGGGGGTTTTAGAGCTATAATACTAACAAAACTTTTTGCGTTCGAATTTCGAAGTGTAAATG 471223 36 86.1 27 .........T..A........C.......TT..... TATGTTTTCCCCCTTTTGCTAACAGGG 471286 36 75.0 0 A.....A...C.A............A.C....T.TT | ========== ====== ====== ====== ==================================== ======================================================================================= ================== 25 36 98.4 32 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGACAAGTTGACTGCAACAATTAGCGAGTTAATAGGCTATGAGCTATTGGAACATGAACTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCGTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTACTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTATATCAAGTAAAAGTTCTGTTTATTGAACCTAGAAAAATAGACGGCTTTCCGCAGGCTATTTTGGATCCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGGCTGAACGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAGAAAAAAATCTACGAG # Right flank : TAGAAACAAAGGTTTCATAAATCAATCCTAGTAAAGTCTGAAAAGGAGGTAAACCAACCACATGACGCAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTGGCTTCCCCTTTCTTCTATATAAACGATCTAGATTTCTTAAACTTAAATTTCGAAGCAAACATCGACCGTGATACAAATGATTTATTCTCCTATTCAATACACTTCAACCGAGCTTGCAAATTTCAAATTGCCATAAGTGAAGGGGAATTACCGTTAAAAGACGAAGTGCAAAATAACAATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAAAGCGAGTAAAGAAAGTGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACGAATAAAACAGAATTATCCATAGAGAATTTAACTCTTGAAAGCTTGATTTTGAGCGACAGAGAACTATTAATAATTAAAAATAACA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 266411-266958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYO010000001.1 Listeria marthii strain UTK_C1-0014-E1 NODE_1_length_1431633_cov_78.654662, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 266411 29 96.6 36 .......T..................... ACATTTGGTAAAATTTTAATCTTTATAAAGGTTAGT 266476 29 96.6 36 .......T..................... GCCATTCCGGTCGTTCCTTCTTCGATACCTTTTGTC 266541 29 96.6 35 ..........T.................. CCTGACCGCGTAGTACCGATAATACAATTATTAGT 266605 29 96.6 37 ..........T.................. CATATCCATCACGGTAGTTCTCTAAACGTGTCCATCC 266671 29 100.0 36 ............................. ACAGCTTGGAAGAATAAAAAAACAGCTTCAGGGTGG 266736 29 100.0 35 ............................. TACAATATGTAAGGGAAGGTTGAGGAGGCTATGAA 266800 29 96.6 35 T............................ TGTTGTGAATTTGCTTTTCGGTCAAGTTCATCTGC 266864 29 93.1 37 T........................G... TTCGATGGCTTTAACGCACGTTTGCATAAAGGCGAAA 266930 29 93.1 0 .......T......T.............. | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 96.6 36 GTTTTAGATACTTAATGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCTGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCTATCGATCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCCATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAGAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGCGTGAAAAATGCTGGGGATCGACAGAAAGATGGGAATGGTTGGGGTGAGAGGAGTTTGGTGGTTTTTGGTTTTGAAAACTATGTAGAGAAGGGTGGATTTTCGTTAGTTTTTAGCCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TGATTTCCATTTCCTACACAAAAAAGCCATCCAACAGGATTTAGGCTTATTTTTTATCCTCCCCGTTAACAATTCCGCAACAAAGACACCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACATCACACGCCAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAACATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATTTCAGAACCATGGTACTTA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTAATGTGAAATGTAAAT # Alternate repeat : TTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //