Array 1 838180-838342 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCB01000001.1 Caldicellulosiruptor bescii strain RKCB129 Ga0154050_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 838180 30 100.0 37 .............................. ACGTAAAAAATAAGGAGTATGTAAGGGGTTTTTTGCA 838247 30 100.0 36 .............................. TAATTTTGATATTTTTCATAGTTAACACTTATCAGA 838313 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 37 GTTTTTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : TTCGAATTGGAAAAGCGAAGACAAACAGGTGAGTGAAATTCTTTTGCAATTCTCATAACATCATGCATAAGTAAATGCACTTTTTCTCACTCTCCTTAACAGACTGGAAATACAAAAGACATAGTAAATTTTAATATGAGATTTTGATAACTTTAAGGTCAAAAATTATGCGAATTTCATTTATGAACATGGAAAATTAGAATTTTCATTACATTAGTTAAATGATATTGTTTGTAATTCAGTTTATATTTTCTTTTTTGTTATGATGTTATGTTTAATTTTTGTATTTTGTATTTACTTTTTCCTATACTTTTTTACTTTTGTATTTACCAATTGCTGTCGACCTGCAATTTCCCCAAAAACCCCCGGGGATCGACAGCAAAAGGTAATTTCTGGTATGTGTTGATTTTCAAGAGCTTGTGGGGTATAATAGAAACAATCTATAGTTGCTTGAAAACATAACCATTTATTCCTTGCGACGTTTTTCAAAAACCTCCACG # Right flank : CAAATTAATATAAATATGAAAATCAAATAAAAGTAAAAAATGGAGGTGTTGACATTATGAAGATTAAATTAAACAAAAAGTCAATAATATCATTGGCAGTGGTGGTGACATTTATTATAGTAACTTTATTAAGTCCTGTATTTTATAATTGTAGCCAAAAGTCAAGCGTTAAGCAGGATATTACCAGCCAGCAACCTACAGATAGTAATACCCAAACAGAAAAATCTACTACTATAACAGATAAATTGTTCAACTGGATGAACATATTTAAAGCATATGCAGATAATACAAACAGTGACAGTGATGGCAATATAGATAATGAGATAGTTAATGATGCACCATATTTAGTTCCAGTATGGCAGCCAGGGGAGATTAACCCAGTAATATACCAGAAGAACGGAAAATTGTATAGGTTAAATGATGTTTCTCCAGAAACTTTAGCTAGGTATTGCAGGATATTGTATGAGTTAGAGGTAAAAGATGTAAAAGAAAAGTATGTT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 853137-856657 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCB01000001.1 Caldicellulosiruptor bescii strain RKCB129 Ga0154050_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 853137 30 100.0 37 .............................. TCAATCTCCAAAACCTTTATATACTTAAAATCATAAA 853204 30 100.0 37 .............................. TCTTTACCATATGATAAGACTTTCCGCTTCCAGGTTT 853271 30 100.0 36 .............................. TTTATGATTTGTGTTTTTATTTCGAACTATGAGGAA 853337 30 100.0 37 .............................. ATAAAAGCAATTAGTTTGTAACTAAGGTCATCTTTGA 853404 30 100.0 35 .............................. CAGCTTCAATCTCAAGTTTGTCTTGTTCATAATTG 853469 30 100.0 36 .............................. CTGCTTGGTTGCTTCAAGCTCTAAAACTTTGAGCTC 853535 30 100.0 37 .............................. TATGCATTATTTATGACAGAAATTTAGATAACGAAGG 853602 30 100.0 36 .............................. CAATATCTCGTATCTTCTCACTTGCCTTGTCTGTTG 853668 30 100.0 38 .............................. TATCTTGCCTTAGTAACAATTGCCTTCTTTTGGTTCGT 853736 30 100.0 37 .............................. ACTTTATTATCGTTCACAAGGTAGATAGATTTGCTCG 853803 30 100.0 36 .............................. GTGTACACATCTTTACCTTTTTTCAGATTATATACT 853869 30 100.0 37 .............................. ACTTCTCGATTATTTTTGAAAATAACTTTTCCTGTAT 853936 30 100.0 36 .............................. ATGAACCTAGCATTCTTACAACTAAAAAACATAAAT 854002 30 100.0 36 .............................. ATTTTTCGACTTTGTTTGCATCGGTAAAGGATACAA 854068 30 100.0 36 .............................. TTCTTTTTAGGTTTTGTTGATTGTTTTGAAATTTTA 854134 30 100.0 38 .............................. AAATTAATAGATGTAGAAGGTGAACCTTTCAAATATGA 854202 30 100.0 38 .............................. TTGTGTCTCATTCATTCTATCACTTCCTTATCCAACCA 854270 30 100.0 37 .............................. ACTCTTTCTCTTCTCTTTCTCTCTCTTGCATCATCAC 854337 30 100.0 37 .............................. CACGATAAGAAAAATGACGTAAGCAAATATTGTGCTG 854404 30 100.0 36 .............................. TAATTTCCTCCTTTCTAAATTTTAATCCCTAAATGG 854470 30 100.0 36 .............................. ACAACTTTGAAGAAGCTCCACAGACCACGCAGAACG 854536 30 100.0 35 .............................. CTTAATGAGTTCGTTTTGCTTACGGATGGTTTCCA 854601 30 100.0 36 .............................. AGTGTTTGGCTATCAGCTGTGTTAGTTTGGTATGGT 854667 30 100.0 36 .............................. AAATTTATTGCTGATGCATTTAGTTCTTTAGGAAGT 854733 30 100.0 36 .............................. AAATTTTGAGTGAAATCTTTAGTGAAAGTGATTTGA 854799 30 100.0 36 .............................. TCATCTGCAACATGTTGTGCGCAGTTTCAATGAAAT 854865 30 100.0 39 .............................. TATATATAACTTTGATATTTGTTATTTTTAGACTTTTTG 854934 30 100.0 35 .............................. TCTTTTCCAAATCCACCGTCCCATCCTGTGGCACA 854999 30 100.0 36 .............................. ATTGTATCATAGCTACATTTGTGTAAACACCTAAAG 855065 30 100.0 36 .............................. ATTGTATCATAGCTACATTTGTGTAAACACCTAAAG 855131 30 100.0 35 .............................. CCCACTATCTTATCGTAGTAAGTCACAATAGCCGT 855196 30 100.0 36 .............................. ATGTAACCACTGATTCTAAACGTACTACTTAAAACT 855262 30 100.0 38 .............................. TTTCATAAAACCTCCTATGATTCTTAATAATAGTCTTA 855330 30 100.0 36 .............................. TTTTTTCATTTTTCCATATCTCTGTCCAATATTCCC 855396 30 100.0 37 .............................. AGATATAAAGATTTACTTTTGCTGTTATAAAATCATT 855463 30 100.0 35 .............................. ATATCTCTTATCATAGACTTACAATCATCATAATT 855528 30 100.0 36 .............................. CAAACTCTATTACTCTTTGTTCCAATTCTTCAGCCC 855594 30 100.0 36 .............................. ATAGCTCAGGTTTGTATAATACATCACCTGATTCAG 855660 30 100.0 38 .............................. AGATATACAAGCTTATTCTTGCCGTTATAAAATTATTC 855728 30 96.7 35 .............................T ATGAGAGTAACGCTATTAGAATGGTAATAAAGTGG 855793 30 96.7 36 ...........C.................. GGTACAACAGCAAAAAATCCTCTTTATATGGCAAAT 855859 30 96.7 37 ...........C.................. AGGCTATCACAAGCCTTATCACCAGCGCCAATATAAA 855926 30 96.7 38 ...........C.................. TTTGAATTTGACACAAGCAGTAACAGGAAGTGTAAATT 855994 30 96.7 36 ...........C.................. AAATTATTAAAGTTCTTCAAACAAAAGAAGAAATTG 856060 30 96.7 36 ...........C.................. ATGCCTTTAAATTGTAACCTCTCAATCCTTCTACAA 856126 30 96.7 37 ...........C.................. GTAAAAATGGAGATACAATAAATGGAATACTTAATAT 856193 30 96.7 35 ...........C.................. AATTATAGTGGTAGTATACCTAATACTTTTCGTGT 856258 30 96.7 35 ...........C.................. ATAGAATATGTCTGCTTGGTGTATCGCAGGATTTA 856323 30 100.0 38 .............................. TTTGTTCCAGCATTGTAAACTCCACTAGCTGGTGAATA 856391 30 100.0 36 .............................. AAGAAAAGCGAGGCTGTGAGGTTTTTAATGCAGAAT 856457 30 100.0 36 .............................. TTACATTTTCTCTACCAAACTTCTCTGTTATTCTTT 856523 30 96.7 37 A............................. CTGGTAACCTGACTGTTGAATACTTGTCAAAAAGATT 856590 30 86.7 8 ...........C...............GGA TGAAGTGG Deletion [856628] 856628 30 70.0 0 .C....TTA..G..T...T..A.......T | ========== ====== ====== ====== ============================== ======================================= ================== 54 30 98.6 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : TAAATAGGCATCATTTCCAGATGCATCACCAATTAAAATATCACCAATCTCAACTATTTCCTCTATCAATAGCCTCTCACCTCACTTTTATGTTAATTATACCAATTTTATTTTCAAGATACAACCGAATTTTGAACTTGCAATCCTCGTTACTTAGTACACTTTTTAATTTTACATACCATCATTTAATTTTTAAGGTCAAATTTTATGCGAAGTTAATTAGCTTTATATGTCATTTTTTTCATTTTATATTATTTTTGCTTGTGCAAAAATTGACATTTTTAATTATGTACTTTGTGATTTGTGGCGTATTATGACTTTTGTATTTACCAATTGCTGTCGACCTGCAGTACCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : TAATATCTTGAAATTTGTTGATTTTCTTTTAGAACGGGTTTATTTGTAGCTCTCTTCTTGGGAACGATAAGTAAAGAATTTTCAAAAATACTAAATTAAGTTACAATTTTGGTAGCTTATATATCCTCCAAAGAAAGATTAAGATGAATTGGGTAAATATGGGATAAGAAGAATAAAATTATTGTCAACTTAGCCTGTTGAAGCAGGGGGTGCCAATGATTTTAACCATTTTGTAAGATGCATTGAGCCCCCTTAATCAATCATTCAAACAGCAGGAAGGACAAGCAGAAAAGGTAAATAATGAAAGAACAAAGTAACAGTTGTTGAAGTTGTATCTAAATATAGGGGAAGAATTTTTATAAAAAAGGTTTATGATAGTGTATCGACTGATTGATGTAACCAAAAAATTTTAAGTCAATTCCAATTTGGTTGATGAAAGCAAGTTTGAGGAGCTAATTCTTGAGCATTACAGAAAGCTTGCATGACGTGCTGTTTTTGAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 877641-879985 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCB01000001.1 Caldicellulosiruptor bescii strain RKCB129 Ga0154050_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 877641 30 100.0 35 .............................. AATCCTTTTAACCTCATGGGTCGTGTAGGGAGTAG 877706 30 100.0 35 .............................. TCTTAAGACCACTTTTTGTTTTAACAAGTTTAACA 877771 30 100.0 35 .............................. TTAACCTCTTGTCTCCATCAGGAACTGGAGCAAGA 877836 30 100.0 36 .............................. CGGGGATGTTTTTACCTGCCCAATTTTCGATGACTA 877902 30 100.0 36 .............................. ATTTCACAGATGATGCAGTTAGGCGTTCTTACAATA 877968 30 100.0 37 .............................. GCTGGCTGGGTTCTGTTAGTTTTTTTCAGTGTCGCCC 878035 30 100.0 36 .............................. GTCTTTTATCACTTCTCGTTTCACATCCCCTACCAA 878101 30 100.0 36 .............................. AATACATCATCAAATCCTCAAATTCTTGATCGTATG 878167 30 100.0 35 .............................. TTGTACACTTCAGGGTCTTTTGGGACAGTTCCTAA 878232 30 100.0 33 .............................. GCAAAAAATCAAGTACTTTTTTTATTTTTTAAA 878295 30 100.0 36 .............................. GCATTAATTCTTTTTCTGTTTCAGCTAACATAGCCG 878361 30 100.0 37 .............................. ATTTTTTGAATGAGATAATGCAGAAGACGAAAGGAGA 878428 30 100.0 36 .............................. AAGAAATAGAGAGAAAAAGAAAAGAAGAACAACAAA 878494 30 100.0 37 .............................. TTTGCTTTGCTTATCCCTTTAGCTTTGCTGCTTACTA 878561 30 100.0 36 .............................. CTATTTCAGTAGTTGCTAATGGTTTGTCAACGTCTT 878627 30 100.0 36 .............................. TTTTACAATTACTATTATACTCGAAATTTTTATTTT 878693 30 100.0 36 .............................. TAACCGGCTCTCCTGTTACCCTTATAACACTTGTTC 878759 30 100.0 36 .............................. GTGCGGTATCTGGAAAAGATTTTGTAATTCAAGATT 878825 30 100.0 36 .............................. AACGTTTTAAAAAGGATGGCTGAAGGTGAACGTGTT 878891 30 100.0 38 .............................. TGGAGAAATCAGGTAAACTGTCCATAACGTCCTCAATG 878959 30 100.0 36 .............................. GCATTAATTCTTTTTCTGTTTCAGCTAACATAGCCG 879025 30 100.0 37 .............................. ATTTTTTGAATGAGATAATGCAGAAGACGAAAGGAGA 879092 30 96.7 36 .............................C TAATATAGCAGAGCTATACTTTGTAGTGTTTCTTCA 879158 30 96.7 35 .............................C TTTTCATCTATGATGTCCATCAACTTTTCAACAGT 879223 30 96.7 36 .............................C ACAATGTACATTAATCTGTCAGGGAATATTGCTTTT 879289 30 100.0 36 .............................. AAGAAATAGAGAGAAAAAGAAAAGAAGAACAACAAA 879355 30 100.0 36 .............................. ATATTTGACCTTCTTACCACCTCAATCACCCTCTTA 879421 30 100.0 36 .............................. TAACCGGCTCTCCTGTTACCCTTATAACACTTGTTC 879487 30 100.0 36 .............................. GTGCGGTATCTGGAAAAGATTTTGTAATTCAAGATT 879553 30 100.0 36 .............................. TGTGAAATATTCTGTTTTGTTTCTTCTTCAAATATA 879619 30 96.7 36 .............................C CATCGAGTAATGCGGACTGCAACTTCTCATAATCAT 879685 30 96.7 38 .............................C CACACCTCACCTTCTTTTAACTGCTTTTCAATTTCCTG 879753 30 96.7 38 .............................C ACATAAGTAAAAACGGTAAAACTAAGTAGAACAAAAAG 879821 30 100.0 37 .............................. AAGAGCTTGAAGATTATATAAAACAAAAAAACACAAT 879888 30 96.7 37 .............................C TGACAATTAAAGCATATCAAAATGCCTCAGTAGCATA 879955 30 90.0 0 ...............G.........A...G | T [879982] ========== ====== ====== ====== ============================== ====================================== ================== 36 30 99.1 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAT # Left flank : TTTTTATAGAATCTTTCCAGTATCCATATATCTGAGAGAGCTTGGACATGGGCAATCATACCTTTCAATTTTGATTTATCTTTAAAATAGTTTATACCCCCATTGAGTGTGATAGTTATTTACATAAAATACTTTTATATAATACCTTTCGACATATATTGACATAATCCTCTATTTTAATGCAATTTTCAGAAAAATTGATTTTTTATTAGTTTTATCTTTGATTTTTAAATAATAATTGTGATTATTTTGCATTATTGTTATTACATTTTATTCCTTTTCAGCTTCTGTATTTAGTTTTATGAAATAAATTATGACTTTTGTATTTACCAATTGCTGTCGACCTGCAGTACCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : GGAGTCTGAGTGTTGGAAGTAGAAGAGAAAAGGAGACCTTCTGTTGGGGATTTAAATTGCTACCAACAGGGTGGTAATATGGTAGTGCAAGTGCATGGTTTGTATGCTTTTACTTTGGAAATTAGGGAAATAAAAGAGTTTTTGCTTTAAGAATTGAATAAAAAGAAGTGTCTTCTTTTAGAAAACTGTGTTAAGGAAAGTTTCTCACCAATTTTATAAAAAAAGGGGCTTTTCATAGCCCCTTTAATCCTTGTCCGTGAACAAGTATAATCTTTTCAGGTTCTAAAATTCTTAATGTGCGTAAAATTTCAAAGTAGTTAGAATGAGCAGAAAGAGGAATATCAAAATAGTGAACCTCAAAATTCTTTATTACCTTTATCATCTCATGAATATACTGCTGTTCTTCTATATATCCGCTTTTGATAAACCCAAATGCACTGCCGTTCAAAAGTTGAACATACTTTACTGCAATGCTGTTTGGCTGAAGCATACCAGAGCTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 905760-906583 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCB01000001.1 Caldicellulosiruptor bescii strain RKCB129 Ga0154050_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 905760 30 100.0 36 .............................. CGATGAAGGATTGTAGGATTTTTGCAATATATAAAC 905826 30 100.0 35 .............................. TATAATAGTTGCTCGCATAGGAAACTCTATACATT 905891 30 100.0 36 .............................. AAAGTTTATCTATTTCTTCTTGCGTTTTATTTGTTT 905957 30 100.0 37 .............................. AAATATTTAGCGCTTTGTCTTTAAATTGAGAATATAA 906024 30 100.0 37 .............................. GTCCCTCACAACGATGAAACAATCAAAAGAATCTATT 906091 30 100.0 36 .............................. TAAACAAATTAATGTAGCTAAATTTGTCGCCTTGTA 906157 30 100.0 36 .............................. TCCAGTGGGATGGAAAGAGATGAAATAATGTCAAAA 906223 30 100.0 37 .............................. AAAATAATCAAAGATTCTTTTACCCCACCTACACATC 906290 30 96.7 36 .............................T CAATATCGAGAATAATCTTTCTTCCTTCAGTAGTTT 906356 30 100.0 36 .............................. GATAATGAGGGATTGAAAGTTGGTGAGCTTGTGAAA 906422 30 100.0 36 .............................. TTCCTTGTATTCGCTACAGGCAAAGTGATTTTACCA 906488 30 100.0 36 .............................. TCATAATTTAATCTTCTGCGTGTTTGTCTGCGCAAA 906554 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.7 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : CTTCTCTTCTATTTTTTGAGCTGGCAATTTTTTAGTTTCTGTTGTAAGTTTAATCATCTCAAAGTTTATTTTATAACTTTTTTTGGCAGTTGAAAAGTTCAAAAAATATGCGAACTTTTAATAATGATAGCAATTATTTAGTCAGTGTGCAACCTGTATAGTCATTATATTATCGTTCAAAATAAAAAGATATGTGTCAAAAATTTAATAAAACAAAATAATACTTTTACATTCATTTTGTCCTTAGATTTACTTTTATGTTTGTTTATATTCTTCTATATGGCTCCATGTGTTTAGAAAAATAAGACTTAAATTAGCTTTTGTATTTACCAATTCCTGTCGACCTGCAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGACAAATTTTGGCATGTATTGACTTGTGGGCTTTTGAGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : CGTTATTATGAAGATTTTGACACTTTAGAGCAAGAACTTGATACAAATATACTTGACAATTTTGAACTTGATGAGGCGGCACCATTTTGATGGTATATGAAGTTACTTATAACAATTCAAGACTTGTGTTTGAAGGAAAAGAAATTAATTATTTCAAGATTTTAGAGGCTTTAGATAAGCTTAGAGATTTGCGTGACTATATTGAACTGTTTTACACTGAGTATTCTGGTCTTCCTCTTACCTCTCTTCCATATGATGTTTTACTTGATATTTTTACAAACTATCTTGACTTTATAGGTGTACAAATAAAGGTTATAGGTAGGTAAACTTTTTTATGGGTGACAAGGCAAAAATAATTGAGCTCATGAAAGCTATTAATAAAGCTAAAGGTGGAAATGTGATAGGTTTTTTGGTAAGATAGCACCAAAATCTATTCCGGTAATTCCAACTCAATCACTTATTCTGAACAAACAGCTAGGTATTGGTGGATTTCCAGGTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 5 915210-918126 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCB01000001.1 Caldicellulosiruptor bescii strain RKCB129 Ga0154050_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 915210 30 100.0 36 .............................. ACATAAAAAACGTGCGATTTCCTTTTTGCCTGTTTC 915276 30 100.0 33 .............................. TAGATAAACAGTTTTATTCACAAATGGGGTATG 915339 30 100.0 34 .............................. TGGTTTGACACGTGTAAGGTTTTCATGGGTGCCG 915403 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 915469 30 100.0 36 .............................. AATCAGCTCCTTCTTGAGCATCATACATCACCAAAA 915535 30 100.0 37 .............................. CTCTTCCTGAAAGCCCAGTTAGCTTGCTCAAGATTTG 915602 30 100.0 36 .............................. CTCTAAATTGTCCACGCAAAACATCTATTTCCTCGC 915668 30 100.0 33 .............................. AAATTTATATAAAAATATTTTCTGCACATTTTT 915731 30 100.0 37 .............................. TCGACCACTACCCAGCGAGAGTTTTTTGGAACAGCCA 915798 30 100.0 35 .............................. CCGCATGATTGGCAGTGGATAGCAGAGCTTGACGA 915863 30 100.0 37 .............................. ACAGCTTTTGCCAAATCACGATAAGTAAGTTGTCTTG 915930 30 100.0 36 .............................. AAACTCTCAGCCTCTTTACACAAGTTATATAGCCTT 915996 30 100.0 36 .............................. TCATATAAATACCCCCCTATCTTATTTCTTATCTTG 916062 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 916128 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 916194 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 916260 30 100.0 37 .............................. TGGAGGGAAGAGTGATGGTTTATCAAATCAAAATTGA 916327 30 100.0 35 .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 916392 30 100.0 35 .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 916457 30 100.0 35 .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 916522 30 100.0 35 .............................. ACAAAATTTACAGCTATGCTCAAGAAATGATGAGC 916587 30 100.0 35 .............................. CCATTAACATGGAGATATGCTTCCTTCTGTGCAAG 916652 30 100.0 33 .............................. TAGATAAACAGTTTTATTCACAAATGGGGTATG 916715 30 100.0 34 .............................. TGGTTTGACACGTGTAAGGTTTTCATGGGTGCCG 916779 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 916845 30 100.0 36 .............................. AATCAGCTCCTTCTTGAGCATCATACATCACCAAAA 916911 30 100.0 37 .............................. CTCTTCCTGAAAGCCCAGTTAGCTTGCTCAAGATTTG 916978 30 100.0 36 .............................. CTCTAAATTGTCCACGCAAAACATCTATTTCCTCGC 917044 30 100.0 33 .............................. AAATTTATATAAAAATATTTTCTGCACATTTTT 917107 30 100.0 37 .............................. TCGACCACTACCCAGCGAGAGTTTTTTGGAACAGCCA 917174 30 100.0 35 .............................. CCGCATGATTGGCAGTGGATAGCAGAGCTTGACGA 917239 30 100.0 37 .............................. ACAGCTTTTGCCAAATCACGATAAGTAAGTTGTCTTG 917306 30 100.0 36 .............................. AAACTCTCAGCCTCTTTACACAAGTTATATAGCCTT 917372 30 100.0 36 .............................. TCATATAAATACCCCCCTATCTTATTTCTTATCTTG 917438 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 917504 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 917570 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 917636 30 100.0 37 .............................. TGGAGGGAAGAGTGATGGTTTATCAAATCAAAATTGA 917703 30 100.0 36 .............................. ATTAACGCATCGTCGCTATTCAGTTTGTCCTCTCTT 917769 30 100.0 37 .............................. TCAGCTTCTTTTTCAACTTTTATGTTGCTTTTACTTA 917836 30 100.0 36 .............................. AGACTTTTTAAAACTGTTAATTATTTTTTACCTATT 917902 30 100.0 36 .............................. ATGTGATAGCAAGGAATATACGATTTAAAAGAGGTG 917968 30 100.0 35 .............................. TTGTGTTCTGGGTCATATAATCCATATTTTGCAGC 918033 30 100.0 34 .............................. TTGCTTTCGTTTTCTCGCTCACAGTATTCAATTG 918097 30 96.7 0 G............................. | ========== ====== ====== ====== ============================== ===================================== ================== 45 30 99.9 36 ATTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : CATTGGATTTTTATACATTGAAAATCCTTCTTTTATTCTGTTTATAAACCAATCACCATAAAATGCTGGAATATCTGTTCTTCTGCTTGCACTAATAATCATCTTACTGTAAACTTCCTTCTTTGATATAGGATATTCAAAAAGATTTGAAAAACATTGCTTTTATATTTTTATTTTACCATATATTTGCTCAGGACAGTATAAAATTATTTCATCAAATATTGCTATTTATTTTGATTTTTCTATATTATGTTATTAATGTTTATACATTAATTGCCATATAATGTTTTGTGCTTTGCTAATAAAGAGAATTTTAGATTTTGTATTTACCAATTGCTGTCGACCTGCAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGACAAATTTTGGCATGTATTGACTTGTGGGCTTTTGAGGTGTATAATAGAAATAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTATGAGATTTCTCAAATTATCTACGT # Right flank : CCCTCGATGTTTTTTCGTTTTATTTTGATCTAATTCTGTGCAAAATTCGGGTATAATTCGATTGGCTGTTGGTTTTGAGGTTTGGGTTTTGTAAGAAGTTTCCATTTGTAGATGTTTGACTTAAGTAGGAAGTTGTTTAGAGATTGGTTTAAAAATTGAGATACTTTAGAGTGTTTACTTAATTTTACCGGTATTTTGGAAATATAGTGGAAAGGTATGTTTGAAAATTTATAAGAAATTAGTGACAATGGGGTGGAAAATTATGATAAAACTTAATGAGTATGGGAATATTATTTGTTCAAGGGAAAATGGAGAAGTAGTAAGAGAAAAAATATTAAAGGAAATAAAAAATGGTAATATAGTTGTAATTAATTTTGAAGGTGTTGAAATGATTAATCATTCTTTTGCAGATGAAGCATTTGGGAAATTACTTTATGATTTATCAGAAGATGTCCTTAGAAATCAAATAAAATTTGTTAATGCTAATGATGACATAAAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 6 922204-922562 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCB01000001.1 Caldicellulosiruptor bescii strain RKCB129 Ga0154050_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 922204 29 100.0 37 ............................. ATTTCTTTACCGTCTTCAGAAGTGTAAACTACCTCAA 922270 29 100.0 37 ............................. ATTTCTTTACCGTCTTCAGAAGTGTAAACTACCTCAA 922336 29 100.0 36 ............................. TTTGCAACCTCTCTTGTCAAAAATACCTGACCGAGA 922401 29 100.0 37 ............................. TCCCTCTGAACAAAAACATCAATATAAAAACCATCGA 922467 29 100.0 37 ............................. AGCAGTTGCTAAAAATAGCAAATAAGCGCAATGAAAA 922533 29 96.6 0 ............................G | G [922559] ========== ====== ====== ====== ============================= ===================================== ================== 6 29 99.4 37 TTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : GGCAATTTTTTCATTCAATCTAAATTAAACGAAACAAAGGTATATAGTGGTTTAGATTTAACCAGAGAGCAAATAAACACAGGTTTAAAAGATGTTGCTGTTAAATTAAAAGATGCTACAGCGATAAAATTTCCATTTTTAGAATTGGCAAAAAACGATGTAAAACTTCCAGATGGAATAGTACCAGACGCAACAGTAAGTATAGAGAGAATTTTAAAAGAAATAATAGAAGGTAGAGGTAATATAGAGAATAATTTTGTATACAAATTAAACTTAAATTCTTATGTATTTGACTGGCCATGGTTTAAAGTAATAGACAGCGATGGCAGATTAGTAAATGCAACAACAGCAAGAGATCATGAAAAGATGTTATATTATGCACAAGAAGCGTTTAATCCAAATTCTAGATAAAGAATGTTCATGATTTATAGATTTGATAAGAATGGAAATTTAAATTTACTTGATAGTTATGATAAGGTTGCTTCAAATGTTTTATTTAG # Right flank : GGTTGGGGTCTGAGTGAAAATTTTTTGACCTTTGAAATTCCTTTAACGGAGCATTATGCTGCTTTTGAATTTTTACTCAAAGGCTAAAATAATTCTTTTAAAAGATTTTGCCAAGTGCAGTTTGGCAGACAAAAAAGACAACAAAAATATTTTTTTGGTTTTATTTTATTTCGTGAGATGATATAATCTTTTTAGAAACTATGTTGTATATTTTTTTATTTTCATGAAATCGCTTTCCTATCTAAAATATTAAAAGTTAAGGTGATTGAGTATGTCGTTAAGAATGCCTTATTTAATTAGCGACGGTATGGTGCTTCAAAGAAACAAACAAATAAATATCTGGGGCTGGGCTGAACCATGCAAGATGGTAACAGTAAATTTCCTGGGAAAGTCATACACGGCAGTAGCTGACCACTTGGGAAAATGGAAAGTTACTTTGCCACCCATGGATGCCGGCGGTCCATACTTTATGGAAATCAAATGCCAACATCATGCTGTTA # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 7 1124138-1132950 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCB01000001.1 Caldicellulosiruptor bescii strain RKCB129 Ga0154050_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1124138 29 100.0 36 ............................. TAAAGAAAGAGGGAAAGTAAATGGCTTTGATAGATT 1124203 29 100.0 36 ............................. CGCATTAAGCCACTGCAAGGTAGAATTTGACCAATT 1124268 29 100.0 36 ............................. TGTATTTGGACTTTAAAATTGTCATTTGCAATATCA 1124333 29 100.0 36 ............................. GTATGATACAAATGGTAATGAGATTAGATTGTATCT 1124398 29 100.0 35 ............................. CAATATCCATATTTGCGAGGTGTAGATGGTGTCGA 1124462 29 100.0 36 ............................. ACACTTAAAAAACTTAATGTAGCATTCATTGGTGGA 1124527 29 100.0 37 ............................. TTTTATTTTCCTTGTTCGTGTATTAAAATCATATTCA 1124593 29 100.0 37 ............................. ATTGAAAGCAAACCACAGATTGTGAATGCTGACCAAT 1124659 29 100.0 36 ............................. TAAAATTTCTATATCGCTAAATATAACAAGCATATA 1124724 29 100.0 37 ............................. ACGCTTCTAACGCAACTGTTTATGACGTTCATAGGTG 1124790 29 100.0 37 ............................. TCAGTTAATCATTTTAAGCGCTTGGAGCCTTTTTGAT 1124856 29 100.0 37 ............................. TTGAGAACTTTTATATTAACTCTATCAACTAACCCAG 1124922 29 100.0 37 ............................. TTAAACCAACTAAGTATGCTAAATCAAAAGGCAGCGA 1124988 29 100.0 35 ............................. ACAATCTTGTTGGAATATTTTCAAACAGAGCAACT 1125052 29 100.0 37 ............................. AAGATGATGTAGCACCATATGTCGCACTTGGCTTTAG 1125118 29 100.0 37 ............................. TGAAAACAAGAAAGATTTTAATATCAAGCCACTGGAC 1125184 29 100.0 36 ............................. TCAACAATTTTATAGCCAAGTGGTGGAATTCCACCA 1125249 29 100.0 36 ............................. CTATGATTATTATAACAAAATGTTCTGTTCCTTAAA 1125314 29 100.0 37 ............................. CGTGTATCCCAAGTTTAACGCACATCTCATTCACCTT 1125380 29 100.0 36 ............................. TTGATAATATATTTGACTTTGCTCATCACTTTACAG 1125445 29 100.0 37 ............................. GCACCAAACAAGCTCAAAATAGGTATTGCCTGCCTTA 1125511 29 100.0 36 ............................. AGTGATTTCTTTATTGAGTTCCTTTTCTATTTCTGC 1125576 29 100.0 37 ............................. ACAAAAATGGTAGAAAACAACAGAAAGTATAAATTGT 1125642 29 100.0 36 ............................. CTTTGCAAAGATAAAAAATGCTGGTTGTGTGGAGGT 1125707 29 100.0 37 ............................. CCTTTCTTTTTTTTTCTAACAGACCAGCCCTACTCGG 1125773 29 100.0 38 ............................. GTTGTCAATGAAAATTGGTGCTGAGAAGTTGTAATATT 1125840 29 100.0 36 ............................. GATTTCTGATGGAAATCAGGATATTAGCCTCTGGTA 1125905 29 100.0 36 ............................. TGTCTGTTTCAAGGCGTCTTATAAGCTTATCTTCTG 1125970 29 100.0 37 ............................. CTTTTTCTGTGCAGCATTGTAAGCCTGCATTACAATT 1126036 29 100.0 37 ............................. GCTAAACCACCAGCTAATAATGTTGCTGTTGCCACAT 1126102 29 100.0 38 ............................. GTGCATGTGCATGAGCCGATTCAGAAGGGTTAATCCCT 1126169 29 100.0 36 ............................. TGAATTTCATGTATCATCAAATAATGTCTCAAATAA 1126234 29 100.0 39 ............................. CTGGAAGCACAAGGGATTATAAAATACGAAATTGATAAT 1126302 29 100.0 37 ............................. ATTCGCATTGATGAGATTAACAGAACAATGATAGCAG 1126368 29 100.0 37 ............................. GTCGAATACTCTAAATCTTCAACTGTATTATAAAACC 1126434 29 100.0 37 ............................. ATTCGCATTGATGAGATTAACAGAACAATGATAGCAG 1126500 29 100.0 37 ............................. GTCGAATACTCTAAATCTTCAACTGTATTATAAAACC 1126566 29 100.0 33 ............................. CAATTATATGCTTGTTATATTTAGCGATATAGA 1126628 29 100.0 37 ............................. GCTTGAACTATAAACTGTTTTGTCGCTGGTGAAAGTG 1126694 29 100.0 35 ............................. AATAATCAGTAGGGCCCATTATTTTTTCGCCAAAA 1126758 29 100.0 37 ............................. CTCTATTTTTTTATTTTTAGAAGGGGGAGTAGTGATG 1126824 29 100.0 37 ............................. CTTGCTAAAACTGTAGTTTTTTTGCTTGTAGGTGACT 1126890 29 100.0 37 ............................. CAGGTAGGATATTTCCCTTTGTATGCTGCAGGTTATA 1126956 29 100.0 36 ............................. TTAATTCAAGCAGTTTTTTAGAATTCTGTTCAAGCG 1127021 29 100.0 36 ............................. TTTATAGAAAGCGCTATCATATCGATTGCGTGCAAA 1127086 29 100.0 36 ............................. GCAGTCTTTGTCAAAAACTTTTATAAACATCTTCAT 1127151 29 100.0 36 ............................. ACGGCAACTGAAGCAAAAGCAAGATATGATGAGTAT 1127216 29 100.0 37 ............................. TTTTACTGTTTGATAATGTGCAAATATTCTGTATATG 1127282 29 100.0 36 ............................. CGGAAAACAAATTTGTACTTCCAATCATTCTGCGGA 1127347 29 100.0 36 ............................. CACAGATATTGTTGAACTTCTGGGAATTCTTTTGCT 1127412 29 100.0 36 ............................. TCAGGTAAATTCGGAATTGTACCCATATCATAATCC 1127477 29 100.0 36 ............................. GAAATATCCCTAAAACCATGTCAGAACTCTTCATTG 1127542 29 100.0 36 ............................. CAAGAATCTTTATCTGCTCTAGTAGGAAGCTTTGCT 1127607 29 100.0 36 ............................. CAAGAATCTTTATCTGCTCTAGTAGGAAGCTTTGCT 1127672 29 100.0 37 ............................. GCTTTATCCGGGCAACTGGGATACTCAAACGATTGAA 1127738 29 100.0 36 ............................. GCGAAAGTTTTGATTGATAAAGAAGGTACTTTATGG 1127803 29 100.0 37 ............................. TGTTTCAATAATATTCGTTCCTGTCGTATCATAGTAA 1127869 29 100.0 36 ............................. TCTATACCTTCTATTGAAATTAACATATTGTGACCT 1127934 29 100.0 38 ............................. TGGTGGGTGGCATAATGATACTATAGTTACTGTTGAAG 1128001 29 100.0 37 ............................. ATTGCAAAGTGTAACGTTAGTTTAAAAATATGTGAAT 1128067 29 100.0 37 ............................. GGAGGTAAGACAGTTCAAGCTAGAAGACATTCAGGTA 1128133 29 100.0 38 ............................. CTTTTTTCTTGCAATCTTCATATGTTGAGCTTTGGTAA 1128200 29 100.0 38 ............................. CTTTTTTCTTGCAATCTTCATATGTTGAGCTTTGGTAA 1128267 29 100.0 36 ............................. TTCGGACCAGTTGCCGAGCTGGAACGACATAGCAGA 1128332 29 100.0 37 ............................. TAAGTTTTCTTGAATTCATTGCTTCACCACCTTTCTT 1128398 29 100.0 36 ............................. AAACAAAGGAGATTCAGCAACAGATTGAAGTAGTAA 1128463 29 100.0 37 ............................. GTGAAAGGCCGAAACAAACGTCAACGAATTGACCCTG 1128529 29 100.0 36 ............................. CACTTTTGCTAAAACACCGTCAATGGTCAGGTAGCC 1128594 29 100.0 36 ............................. GGTTTTCCCCAGAACAACAAACCGACATTCTTTTCT 1128659 29 100.0 36 ............................. AATATGGGAAGAGGTAGGTACAGAGAAAATAATTAA 1128724 29 100.0 37 ............................. AAAGGTTGGGTATTTACTTGGCTTGCCTTTAACGATA 1128790 29 100.0 36 ............................. TGTGCTTATTCGTCGTCAACCTGATGTGCCTTCTAA 1128855 29 100.0 36 ............................. TTTCTTTTTAGAAATATTAAAAATATGGATTGACTT 1128920 29 100.0 37 ............................. TCAACCCATGGCTGAACCAATCGCTTACCAATAGCAG 1128986 29 100.0 37 ............................. TAGACGCCCAAACATAATAAAGTGCTTCAGGTATTTC 1129052 29 100.0 36 ............................. TATTCTGCCGAGTTCATGTTGTATCACCATCTGCTG 1129117 29 100.0 37 ............................. TTCTTGTTCAGTTGCTACTATTCTTACTACATTACCT 1129183 29 100.0 36 ............................. AAAAAGTTTGCAAGTTTAATTTTAATGTCATCAGGT 1129248 29 100.0 36 ............................. AATATGGAATGGTCAGAGGGTATCAAGAGTATATTA 1129313 29 100.0 36 ............................. TTTTTATACTAAAATTTTGCACAGAAATAGGGCAAA 1129378 29 100.0 37 ............................. GAAATACAGCGCAATAATAACTATATCCTCTGCTTTT 1129444 29 100.0 37 ............................. GATTTCTGATGGAAATCAGGATATTAGCCTCTGGCAG 1129510 29 100.0 37 ............................. TTGAACTTGTATTTTAGATAATAAGTGTCTGTTGCAT 1129576 29 100.0 37 ............................. GCAGGATTCATACTTGGCCGACCTCGCTCAGGTAAAA 1129642 29 100.0 36 ............................. AAAGATATAAAAAAATTTAAAGACAAAGCATACTTC 1129707 29 100.0 37 ............................. TGTTCAACCTACTTTCTTTTGTGAGTATATCTCTATT 1129773 29 100.0 36 ............................. CAGAGCCTGCGGGGGAGGTCTGGAGGGGGAAAGCCT 1129838 29 100.0 35 ............................. TCTTGAGTAGGTCCCATTATCTTTTCCCCAAAATC 1129902 29 100.0 36 ............................. ACCAAAAGTAATTCCTCATATTAATGTGTTTCACTT 1129967 29 100.0 37 ............................. CGAAATCATGAACAGGATAAAAATAATTAATATAGCT 1130033 29 100.0 36 ............................. TTTTTCAATTAATTTATCTTGGTCACCTAATTTATC 1130098 29 100.0 37 ............................. GTCATTTACATTGAACTTTTTCAACCAGTCATTGGTG 1130164 29 100.0 36 ............................. AGGAAAGTAGTTTTGTATGTGCTTCCTGCAGATGCA 1130229 29 100.0 36 ............................. GATCTTATACGATTATAATTGAAAAAAAGTATAATA 1130294 29 100.0 37 ............................. GTACTCTAAATATTCAGCTAATGACATTTCTGTATCA 1130360 29 100.0 36 ............................. AAATGCAGCAAAGCAAGCTGACCTTGACGCCCACAT 1130425 29 100.0 37 ............................. TCTTCATGGAATCATATAAAAAAACAATATGTTGCAA 1130491 29 100.0 36 ............................. GAAATCAAGAAAAAGCCAGCTTCTTTAATACAGCAG 1130556 29 100.0 36 ............................. GCCGACCCAGATGGATATGGGCATCTGAATATGGCA 1130621 29 100.0 36 ............................. TCTTTGTCTTTGTCTTGAATCAAAAGTTTTTTGATA 1130686 29 100.0 37 ............................. GCAAAAACGCGAGCGGGTAATGTATTTGATACAGATT 1130752 29 100.0 37 ............................. TACAGACCCAGTTAGTTACTTTAAAAAATTTGGCAAG 1130818 29 100.0 36 ............................. AAGATTAGTTTCTATGTTCTGTTTGTTCAGCTTTCA 1130883 29 96.6 37 .....................T....... CACACTGAAAAAGAAATCAATACATAAAGATATAAAT 1130949 29 100.0 36 ............................. GTTGATGGTGTAACGTCAGTGACAAATTTGCAAGCG 1131014 29 100.0 36 ............................. AAAGTGAAGGCGGTTCAAAAAGTATAACACAATTCA 1131079 29 100.0 37 ............................. ATTGAACGCAGAGGTGAAGGTGATGACTGGTATTATG 1131145 29 100.0 37 ............................. AAGATTCAACTTCTACTAACACAAAATGCTCATAAAA 1131211 29 100.0 36 ............................. ACTACCGCCCGCTGACACTGGAGACTGGGGTGATAA 1131276 29 100.0 37 ............................. TCTAAACCACCCGAACTAATTTGCTCTGAATAGCTAA 1131342 29 100.0 36 ............................. ATATACTGCTAAATAATAAAACCTTACGTACAACAG 1131407 29 100.0 36 ............................. GTTGACGACAAAGGAAATATCAAAGTTGGTACAACT 1131472 29 100.0 38 ............................. GATATTTTTGTTTGTTCTAGTTCATAACTATACCCATC 1131539 29 100.0 36 ............................. TTTGAAAAGGAAGAAGGTGATAAAGGAGAAAAAACA 1131604 29 100.0 37 ............................. AAAAGTTGTTGTTACACAAGAATTAGGCAGACAATAC 1131670 29 100.0 36 ............................. TCGAGTTTGTTGTTGACGACGACGGCACAGGGGAAA 1131735 29 100.0 39 ............................. CTGGTAAGTATTAAAAGGGTAAGTCGTCATCGTTGCTTG 1131803 29 100.0 36 ............................. CAGGATGGTATGGTCGATTTGGAAAAGATTAAAGAC 1131868 29 100.0 37 ............................. TTGTTTTGTTGCTTGTAAAGGCGTTGTAGAAATTCTG 1131934 29 100.0 36 ............................. GCGGTTTTTTTACTATAAACTCTTGAAAAATTTTTA 1131999 29 100.0 38 ............................. TTTTTAGTTGTTCGTTGGTGGTTTTATTTACACACACA 1132066 29 100.0 36 ............................. ACGTTGCCTGATGGGTCATACAAACTAATTGTGACT 1132131 29 100.0 38 ............................. TTCTCTTTGCTACCCCATTGATAGTGCGGGCATTTCTC 1132198 29 100.0 37 ............................. TTCTTTCATTACTTCATCAAGAGAAGAATGCATTGAA 1132264 29 100.0 36 ............................. TATTCTTTCAAGCTCCGCCTGTACGTCCGTTACCCA 1132329 29 100.0 37 ............................. TCAAGTTTTAAAAGCTGAGATTTAACAGAATCATTCA 1132395 29 100.0 37 ............................. ACAATGGTATATACAATATAAATCCGAATGCTTGCAT 1132461 29 100.0 37 ............................. AGGAGTAGGGATGTTATGTTTGGATAAGGGGTGTAGA 1132527 29 100.0 37 ............................. CATAGTACCGTCTGATGCACCAGATTTGCCACATGTT 1132593 29 100.0 38 ............................. AGGAATAATCTGTATTATTTCATTCCAGTCAACAAACG 1132660 29 100.0 37 ............................. TTACATTGTCAAAAGTGGGTAAGCCACCCTTGGTAAG 1132726 29 100.0 35 ............................. GTTAGATTTTTAATTGTTACCCAATCTCCTGCTGA 1132790 29 100.0 37 ............................. GCCTTTCATTACAAGAAGGGAATTTGGTCTATGAATA 1132856 29 100.0 37 ............................. CGTAAAGGTTGCGGTCTTTGATTGCGTGAAGCTCATC 1132922 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 135 29 100.0 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : TATTTGTAATAGTCACATATGATGTCAATGAAAAAAGAGTCAACAAGGTAAGAAAGATTTTGAAAAAATACTTCACATGGGTTCAAAACTCAGTATTCGAAGGTGAAATCACATTGGGCAAGCTTGAAAAATGCAAACGTGAACTTTTATCGGTTATAGAGAAGAATGAAGATTCAGTGTATTTTTATGAGATGGAATATAAACTTGTGTGCAATAAAAAGGTTTTAGGACAAGAAAAGAACTATGATTCTATTATAATTTGAAGATTTTGAAATGAATCCATTGATGAATAAGTATTTCCGAAACTAACCATTTTGCAGCGAGGCTTATAACTATTTTAAAGTTTCTGTCTTCTTTTCCTACAAGGCTTTCAAGACTCTTTACCATCTCCTTACAAAACCCAACCATCCCCTCGCTGCAATTTATTTTTGTTGTGAAAAATTTGTTAATAGGTTATAATATAGATGTAGCATAGAAAAGATGATATTTATTATTAATGG # Right flank : CCTTCAACTGCATTTTCAATATAACCTTTTATCACAGTTTTATCTGTTAGCACGAAAATAGATTGCATTCAAAAATGATTTTGAACATAAACAATAGAAGATTCTCAATCATTTAATAAGAAAAAAAGACAATAACAAACTAACCGATGCTAAAAAGGCATCAGCTGGAATTATTATAAATTTAATCAAGATTTAAACTGATTGGGGGCTTATAACTTCTAAACCAAACTTTTTTGCTTCGCTGATAAGTCGATTAAAACGAATTATCTCTTGTTTCTTTCGAACTTCACTAAAAACTTTTTCATCATAGTCAGTGTCATTCTTAAGCATATTATAGATTATAACCAGTAATTTTCTAGCAAGAGCTACTATTGCTTTCTTTGCCCCTCGGCGCTGCTTTACTTTCCAATACCACGTAGCAAGGTATGAATCTCTTACGCGAGTTAGACTCCATGCAACTTCACACAGTATCCTCTTGATGTAGGTATTACCCTTTGTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 8 1136794-1138067 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCB01000001.1 Caldicellulosiruptor bescii strain RKCB129 Ga0154050_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1136794 29 75.9 38 T.GAC..T.AC.................. GTCATCTTTCATTTCAAACATTGAACGTTTTTTGTGAC 1136861 29 100.0 38 ............................. GTCATCTTTCATTTCAAACATTGAACGTTTTTTGTGAC 1136928 29 100.0 35 ............................. GTCCCAATCTTTTGTTATATTGTAAGTTGGTATAG 1136992 29 100.0 37 ............................. TTTAAAATCATTATGATATGCTAAGGCATAGTAGATG 1137058 29 100.0 38 ............................. GACATCTTTGTTAAAACTGTGGTAGACAGCGTTCGCAA 1137125 29 100.0 37 ............................. TGAGGATTATGCGAGAAAAGTTGCTAAAGCAAGTTTG 1137191 29 100.0 37 ............................. AAAAACATACTATACAATCAATAAGAATTTTTATCAT 1137257 29 100.0 36 ............................. CTTAAAGGGCTTGAAAACTTAACTGTTGCTCAGCAG 1137322 29 100.0 37 ............................. AACATATCTTGCATACGCTTTTTTAGATTCACATCTT 1137388 29 100.0 36 ............................. TTGAAGCTGTACAAAGAGAAATGAAAAGAAGAGCTC 1137453 29 100.0 36 ............................. CTTCACAAGACATGTATCAAAATATTTACAACCTTG 1137518 29 100.0 36 ............................. AATTCAAAAATGGATTATAGCAAAAATCAGCTTCAA 1137583 29 100.0 36 ............................. GGCAAGAAGAATAAGGCAGGCAATACCTGTTTTGAG 1137648 29 100.0 36 ............................. CGGGATTAAGATAGGCGTTCAAGCAAACACAACAGG 1137713 29 100.0 37 ............................. ATGAAAGAGCTGAAAGCAGATTTAATGAGCAAGAAAG 1137779 29 100.0 36 ............................. GGCTCTGGTTTAAATTGAGAAATAAATCCATTGCCT 1137844 29 100.0 36 ............................. GGTGAAATATTTAATAATGTGTTAGGATAAGGAACA 1137909 29 96.6 35 .........A................... AGTTTTTATCAAGAATTTTTTCTTTTGTTATGCTG 1137973 29 100.0 38 ............................. TTGAATCTAACGCAGCAACGCCTCCGCTTTTTTGTATA 1138040 28 72.4 0 ..................-.C..TCCTGT | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 97.2 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : TTGTCGGAACACCAGGGGTAGGGAAAACGCATCTAGCCACAGCAATAGGTATAGAGTGTGCAAAACGAAGGTATTCAACATATTTTATACATTTTCAAGAGTTAATAGCCCAGCTAAAGAAAGTATTATTGGAGAACAGATTAGAGTACAGACTTAAGCATTTTTCGAAATACAAAGTTTTAATAATAGATGAGATAGGTTATTTGCCAATAGACAATGATGGAGCAAATTTATTTTTCCAGCTAATATCGAGCAGATATGAGAAGAGCAGTACAATAATAACAACTAATGTTGTATTCTCAGAATGGGGAGAGATATTTGGTGGAGCGACAATAGCAAATGCAATTTTAGATAGGCTACTGCATCATTCTTACGTGATTTTCATAAAAGGTCCTTCATACAGATTGCAGTCAAAAACAGCATATTTTAGCAATACAAACCAGCAAAGTTAAGTTTATTTTTTGTACATTTTTATTTTCGATTTTTTGTTCATTTTGATA # Right flank : TAATGAACGAAAATGAGTGAAAATGAAGTGAAATGAGATTTGAAAAAGAAAAGGTACCTCCTGATAAAATATAGTTAAGTAAGTTCTAGAACTTACGAGAAATCATCACAAAAGGAGGTACCTACCTTGAAGTATACACAAAATGAGAAGATATTACAAGTCACAGAGAAAACATTAGTTGTAGGAGTAGATATAGCAAAGGAAAGGCATGTTGGCAGAGCATTTGATTTTAGAGGAGTGGAGCTTGGCAAGAGAATAGAGTTTGAGAATAGAAAAGAAGGTATGGAAAAATTTTTGGATTGGGCAAATAAGATAATGAAAGCAAATGGCAAAGAGAACGTGATGAGACTTGTCAAGAATTTTGTGTTTCCAATTTATAACGCAAATTGTAGAGTTGGGTTATGTTGTTAATGCATTTTCTAATGCTGGGAACTCCATTTTTCCATTTTGTACGGCGTAAGTTCTCTTCTTGTTAAGTAAATATTAATTTCTAAGACTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //