Array 1 1170319-1170766 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014135.1 Pseudomonas agarici strain NCPPB 2472 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1170319 28 100.0 32 ............................ TCGCGGATTGGATGGATTAGCGGTAGACGCCC 1170379 28 100.0 32 ............................ TGCCGTCAGCGCTAACACCATTCAGAACGCGT 1170439 28 100.0 32 ............................ ACTTGAGCCCGGCGAAATTGTGCACCACAAAA 1170499 28 100.0 32 ............................ ATGCCGCGGTCTGAACCAGCGTTGCTTGAAGG 1170559 28 100.0 32 ............................ TGCCAGTAATCGGCTAAGCGGTAGTGCATCGG 1170619 28 100.0 32 ............................ TACTACCGGCGACCCAGTAACCGATGGTATCC 1170679 28 100.0 32 ............................ GGTTAAAAGGATGATCCTTTTGATCTTGGTAT 1170739 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : AAGCGAATTCCTCGCAGCCAGCCAGTGGCGGTTCGGTAAAAGCCGACGGATTCAGCGTCTCGAAAACTTCAAGGGAGGTTGGGTGGGTGTAGCGCTGCTGCAAAGGTATATTCATTTTGTTATTCCTAGTCCTTTGGGCTTTTTTGGGCGGCTGTTCCTGCGTCACGTTGTTGTGTGCCTGTAATCGGACGAATATCAGGGCAATGACTGCAAGAAGAGCGGCTGGCCGTTCAAAGGCTAGCGTCCGGGTCGCCAAAAGTAAGTAGGAAGCATCTGAAACAGACTTCGAAATATTGCCTTGTCTGTCATGGAGTCGGTTTCAGCAGGCGTTTGGTATGGCTTGATCAGTCGATTGCAGTTCATGGCTTGACCCTCTTTTTTTGATGGTCGCTAGCTCCTTGTAAAATCAAGCACTTAGGATGGGGCAAAAAAAGAGGGGTAAACTAACAATCTGGGAATATTTCCCTTTGCGGGCAATGTATTATCATTGAATCGCTCTG # Right flank : ATCCTTGCGAATCGCGGGTTGGAGTACCACACGGTTCACTGCCGCATAGGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCATAGGCAGCTCAGAAAATAAATCCAGCAACACCAGAAGGCCCGGCTCTGTTCACTGCCGCATAGGCAGCTCAGAAATATCTGCGCGAGGAAAGCAGCTATACGCAGCCGTTCACTGCCGCATAGGCAGCTCAGAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1171177-1171325 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014135.1 Pseudomonas agarici strain NCPPB 2472 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1171177 28 100.0 32 ............................ TATCTGCGCGAGGAAAGCAGCTATACGCAGCC 1171237 28 100.0 32 ............................ TGCTGGAGATTAAATAATGACTGGTAATAACT 1171297 28 85.7 0 .....................C..T.GC | T [1171320] ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CCGTTCACTGCCGCATAGGCAGCTCAGAAAGGTTAAAAGGATGATCCTTTTGATCTTGGTATGTTCACTGCCGCATAGGCAGCTCAGAAATCCTTGCGAATCGCGGGTTGGAGTACCACACGGTTCACTGCCGCATAGGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCATAGGCAGCTCAGAAAATAAATCCAGCAACACCAGAAGGCCCGGCTCT # Right flank : CGGTCAATCAGTGTTTTGAGGCGGGATGACGTTACACAAATCTTCGTTTGTCTAACGCACTGCGTGCAGAACAGTCACCGTTAACCCGGGTCGACACCGATGAGTTGGCACTCTGCCATCTTTTCAGTTATAACCTTGCTCAAAGAACAAAAATATAATCAGTGGTAGGCTCATGGAAGATATTCGTTCTTCGGATCTCAAGACGATCCTTCATTCTAAACGCGCCAATATCTACTACCTGCAGCACTGTCGGGTATTGGTCAACGGCGGTCGGGTCGAATATGTGACCGACGCCGGCAAGCAGTCGCTCTACTGGAACATCCCCATTGCCAACACCACGACCGTCTTGTTGGGCACCGGAACCTCGGTGACCCAGGCGGCGATGCGTGAGCTGGCCAGGGCTGGTGTTCTGGTTGGCTTTTGCGGAGGAGGGGGCACGCCGCTATTCAGCGCCAACGAGATCGATATCGAGGTGGCTTGGTTCTCGCCACAAAGTGAAT # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1180063-1181473 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014135.1 Pseudomonas agarici strain NCPPB 2472 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1180063 28 100.0 32 ............................ TCAACGTCGCCGGCTTCTTCATGAATGCCGAC 1180123 28 100.0 32 ............................ TTGGTGGTGTCCAGTGGGATGCGCAACTGTTG 1180183 28 100.0 32 ............................ TTCAGGCGGGGCGCCAAACGCTGACGCCCTAC 1180243 28 100.0 32 ............................ GCATCGCCTACTTTGCGCACGGCGGTCAATAC 1180303 28 100.0 32 ............................ ACCACGTTCAAGAGCTGTTGCAGGGCGTCTCG 1180363 28 100.0 32 ............................ TTGTCGACGAACCACATTTGCCCCCACAGATC 1180423 28 100.0 32 ............................ ATACGGCGGACTTCGCTGCCCATTCCGGTTGC 1180483 28 100.0 32 ............................ GCCGAGAGCATCGACATTATTGAAGCACTGGG 1180543 28 100.0 32 ............................ TGAACGCCGCAGCCAAGTCGATGAAGCTCATG 1180603 28 100.0 33 ............................ GCGAAGGCCGCAGGCGAGATAGTCATGTGGCAT 1180664 28 100.0 32 ............................ TTTGCACTGGCTTGAGATACTCCTGCCAAACC 1180724 28 100.0 33 ............................ GGAGTACACGCAGGACGCTGTGGTCACGACTGA 1180785 28 100.0 32 ............................ TTCACCTCAAACTCGCCCTGGATCTCATCCAT 1180845 28 100.0 33 ............................ TTCCGTCGGCTCCGGACATCCCTACGGACTCGA 1180906 28 100.0 32 ............................ TTCACCGCTCAGTCGGTCAAGGCTCTGACCAA 1180966 28 96.4 32 .....T...................... TGGCCGACGGCTCGTCATCGTCGCCTGGAAGG 1181026 28 100.0 32 ............................ AGGCCATGAACAAGAAAAACGTTCAACTCAAG 1181086 28 100.0 32 ............................ AAGAAAGGCAAGAAGGGCAAGAAGGGTGGACG 1181146 28 100.0 32 ............................ GTCGGGCTCAGCGATCAAAACAACTTCAGGAC 1181206 28 100.0 32 ............................ TGGGATCGCGAGATTGAAGCGCACGCCTTCAC 1181266 28 100.0 32 ............................ GAAACGAAGCGCGATTTGTCTGGCATGAGCCT 1181326 28 100.0 32 ............................ GTGATGGTTGAGCCGGCACGACCGCGCTGACC 1181386 28 100.0 32 ............................ TCGGGTGCGCGGGGTGGTGAAGCTACCCCACA 1181446 28 67.9 0 ..C.T........C........TCCCGC | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.5 32 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GGCGCTGACCCAGTTAATGGCCCTGAACTGGTTGACCGGTATGCGCGATCATGTGCAATTCAGTGAATTGGCAGCCGTGCCGACGCAGGTGTGTTACCGACTTGTCAGCCGCGTGCAGGTGGACAGTAATCCAGAGCGTACCCGCCGCCGTCTGATCAAGCGCCACGGTATCAGCGAAGCGCAAGCTCGCGAGCGAATCCCGGACAGTGCCGCCAAACGCAGCCAGTTGCCTTTCGCCAACGTGCGTAGCAAAGGCAGCGGGCAGGTGTTTCCGCTGTTTATCCGGCATGGACCGCTACTCGAAACCTCGCAGGCAGGGACCTTCAGCGGCTACGGACTGAGCAGCACCGCGACCATCCCCTGGTTCTGACCCTCTTTTTTGAGAGAGATACGCCCCTTCGTAAAATCAATAACTTACGAAGGGGTCAGAAAAGAGGGTGTGGGACGGATTTGGGGTGTATTTAGCTTTGTAGACAAAGCTTTACCGAGAAAAGTGTCTA # Right flank : CCATTCGCTCAAGACCCACCCAACCGCCGTCAGCAAACCGATAAACACAACGATGTGGCGATCACAAACAGTTCCGCGTTTTCTTGACGCCTAAATGCCAGCACTTTATGATGGTGATATCAAAATAATATTAATTGTATCTAGGAATGTACATGCGGGTTGTCACCCTCGGGATGAGGTTCCTCGCGGCGTTGCCGCGCTGTGTTACCCCCCTTCGAAAAACCACCTTTAAATACCCGGAGCGTTCGCAACCGCTCGGGCAATAACGCATCGACCCCCGCAATGAATTCGCGCCGGGAAGCTGGCTGTGTCCGCGCGGGCAGGTCCGGTCGCCGATAGGTCAAGCAATCAAGCCGTTTCGCAATTTTTTTAAGTTCGATCCTCCAGGAGTGTGCTGCGTGAAAAAGATGTCGCAGATAATGGTGTCAGGGATGGCCACGGCCTTGCTGATATCCATCGTCGGTTGTACCACCCAAGAAACTTCCCGGGCGTTACCGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //