Array 1 5031591-5032840 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041061.1 Micromonospora sp. HM134 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5031591 29 100.0 32 ............................. TACTCCCGAGGGTACCCGCCCGGGTCCGTCCA 5031652 29 100.0 32 ............................. GCCATCGAGCACCAGCAGCCGTACCCGCAGGC 5031713 29 96.6 32 ............................A GTACCGGACCTATCTCGGTCAGGCGCGGGACG 5031774 29 96.6 32 ............................G CACCGGCAGCCTTTCCCGTAGGCCCAGTAGGT 5031835 29 100.0 32 ............................. AGTGAGAATAGGGGGAACCGGTGGCGCACGAA 5031896 29 100.0 32 ............................. GGACCACGGCATGTCGGTCAGCCTCGGCCACG 5031957 29 100.0 32 ............................. ATCGATAGCGCTCCTGGAAGGGGTTGGCGCGG G [5031979] 5032019 29 100.0 32 ............................. CACATGTCGTCGCCGCCGGCGCGCGGCGTCCA 5032080 29 100.0 32 ............................. TGGATTCCGTTGGCCGCGGCGAGCCGAGCGGC 5032141 29 100.0 32 ............................. CTGACCGACGACGACTGCCCGCTGTTCCACGT 5032202 29 100.0 32 ............................. CGGGGGACGGCGCGGCCTCGGTCTCGTCCTCC 5032263 29 100.0 32 ............................. ATGGTGCTTCCGGCACGGAGAGCAGTCGTCGT 5032324 29 96.6 32 ............................G GCGGGCTTCAGGCCCTTCACCGCGGCGACGAA 5032385 29 100.0 32 ............................. CCCTGCCCGCTCATCGCCCGGCCTCCGGGATC 5032446 29 100.0 32 ............................. GGGACGGGCACCATCCCACCCGAGGTGATCGC 5032507 29 96.6 32 ............................G TACGTGCACGGTGTGGCACACGCCGTGGTGTA 5032568 29 96.6 32 ............................G CTGGGTCGGGCGTAGGCACCCTCGTTGCCGGC 5032629 29 100.0 32 ............................. GATCGAGCCGATCGAATCCCCGCATCTACCGC 5032690 29 89.7 32 ....................A..A....G GTGGAGGGGATCCCCCTTGACGCGCTCGACGA 5032751 29 96.6 32 ............................G TTCGAGACCACCACGTTGCAGTCGCACGCTAC 5032812 29 93.1 0 ..................T.........G | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.2 32 GTCGTCCCCGCACGCGCGGGGGTCTTCCC # Left flank : CCCAACCTGACATCGGCCAGCCTCCGCACATAGCGGCCATGCGCGGTGGTCGACCAGGTGCTGCTGGTATCACACCGTGCCCGCACGGTCTGGGTCGCCGCATCGATCCTGACCCCGACGCCCCGGACCACCACCGCTTCCAACCGCAGGCCCGTCAGGTGCGGCAGCAACGCCGGAATGATCTCCATCCCGGCACCCAACCCGAACTATCGGTGAGCGCGACTCACAAAATGCGTGCCAGAGCCAGTTCCAGTCCGCCGTTGACAGCCGGTGATGCCTCATCCCGGACGCGTCCACGACTTTTTCCGGGGCCCTGCCGCAGTTGGTCCCCTGCGGTACATGCCATCACAGATTCTGCCCGCGCCCGCAACGGCCAAGGGACCGTAGGATGAGGCAACGACCGACCTCCATCGCGAGGCTGCCCGCGAACCCGAATCGACCCGATGAGCCGACTGAACTTTTTCGCAGTCCCCGCTCGATAAAGCCCCAGGTCAGCAAGC # Right flank : GGCGGTGATGCGTGTCCCTATGGGTTTCGTCAAGCGGGGACAGGGCTGGTGGGGCGTGGTTGGTAGGGGATCTTGTCGCGGAGCATGGCGTGGAGGACGTCGCAGCGGCGTCGGGCGAGGCAGATGAGGGCGGCGTTGTGGCGTTTGCCCTCGGCCCGTTTCCGGTCGTAGTAGGCCCTGCTGACAGGGTCGGCCAGGGCGGCGAACGCGGCGAGGAAGAACGCGCGTTTGAGGTTCTTGTTGCCGCCGCGGGGTGGGTGTTCGCCGCGGATGCTGCTGCCGGAGCGTCGGGTCACCGGGGCGAGCCCGGCATAGGCGGCGAGGTGGCCGGGGGTGGCGAAGGCGGTGCCGTCACCGACTTCGAGCAGGATCCGGGCGGCGGTCCTGACGCCGATGCCGGGCATCGAGGTCAGGACCGAGGCGAGAGGGTGCGCATCAAGCATCCCCTCGACCTCGCCGGCGACCTGGTCACGTTGTCGTAGGACGTCGCGGAGGCTGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5034997-5035206 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041061.1 Micromonospora sp. HM134 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5034997 28 82.1 32 .....................TCT.C.G TCCTGACGTCCCCGGCCGGGTGCCGGGGCAGC 5035057 28 100.0 33 ............................ CGCGTCCGGCCTGGCGGCGTCCCGGTCCGCACA 5035118 28 100.0 34 ............................ TGCTGCTCGAAGCGGGGGATGCACCACCCGCATG 5035180 27 92.9 0 .....................-C..... | ========== ====== ====== ====== ============================ ================================== ================== 4 28 93.8 33 GTCGTCCCCGCACGCGCGGGGGTCTTCC # Left flank : GACGCTTCGTCGTCAATGCCGGCACCTTCACCCAGCTGACCAGTTGGGCCCAGCGCTGGCCGCAGCACCGCTTCGCCGTCGAAGGCGCCAAGGGACTCGGCCGCGGCATCGCGCAACAGCTCGCCGCCGCCGGCGCTGACGTCGTCGACGTCCCCGCAACCCTCGCCGCCCGAGCACGGCTGCTGACCACCGGCGGCGGCCGCAAGACCGACGCCACCGACGCTGCCAGCGTCGCCCGAGTCGCCCTGCACCATCACCGGCTCAATCCCGTGCAACCCGAGGATCAGAGCACCATCCTGCGGCTGCTGACCGAGCACCGCGACGACCTCACCCACGAACGCACCCGCATCCTCAACCGCCTGCACGGACTCCTGCGGGAGCTGGTCCCCGGCGGCGCACCCACCGGCCTGTCCGCCGACAAAGCCGCCACGGCCCTCCGAGGCGTGCGACCGGCCACCGCCACCGACGCCTGCCGGCGAGACATCGCCCGAGGTGGGCGC # Right flank : CCGTGCTCGACCACCCGGTCAACCCGGCTGCCAGTCCTCCCGGATCTCCTGGATTCCCCCTGTCGGGCGGGCTTTCTGCCGTCTCTCCACTCACTGGAGCCCCGCGTGTCGCAGGGAAATATGTTCGATTAGTTCTATCGGCGGAGTCGGGCGGAGAGGATGAGTCCGTCGAGGTCGACGGGTATCCATCGGTCTCGGCCGGCGGTACGAACCGCCCAGCCTTGTTCGTTTCGGGCGGGTTCGATCATGATGGCTTGTCCGTCTCCTACCCGGGTGGCGAGTGTTGTCCAGAGGCGGTCGCGGATACGGGTGCTGGGGTTACCCACGAAGACTCCGGCGGAGACTTCGACCATCCAACGGGTGAGATGGCCGCGGAGTCCTTCGGCGACGGCGGTGAGGACGACAACGGTCAAAAATCCACCTTGGGTTCGTGGACCTCAGGTCCGGTGATGCCGATGAAGGTGGTGGCGTCGAAGGCATCGGCGTAGTCGTTGGCCCAG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGGTCTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.42 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 5044978-5047683 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041061.1 Micromonospora sp. HM134 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5044978 29 100.0 32 ............................. CGGGCACGGTCCTGCGGGTGACTTTCCTGGTT 5045039 29 82.8 31 .....................TCT.C.T. CGTTCACCAAGGAGGTGTCGGTCCAGGTCCC 5045099 29 96.6 32 ............................G ACCATGAACGTCTTCGGCCTCGAAGGGCGGGA 5045160 29 100.0 32 ............................. GGCGCGCTGGTCGGGGGCCTGGCCCTCGTCGT 5045221 29 100.0 32 ............................. AGGTTGTAGCCGATGTCGGACCATCCGCGGGT 5045282 29 96.6 32 ............................G TAGTTGCCGACGGCGCTTTCGACGTGGCCGAT 5045343 29 96.6 32 ............................G CAGGAATCCATCCGACGCGAGCTACGCGAGGG 5045404 29 96.6 32 ............................G GCGTTGCAGCCGGCGATGGCCGGGGTGCGGCA 5045465 29 96.6 32 ............................T CTCGACCTTGCAGGGTTCCTCTGTTGCGCTGG 5045526 29 100.0 32 ............................. GCACCCAGCGCGAGGGAGGCGACCACGGAGGC 5045587 29 96.6 32 ............................G ATCCCGGCGCTCGGCCTGTCGCGGCTGGTCGC 5045648 29 100.0 32 ............................. GCCGGGTGGGTCACCCACGCGTACATCGTCAC 5045709 29 100.0 31 ............................. CCGCCCACACCGCCCGCCGCGTCGCGTACGA 5045769 29 96.6 32 ............................G CCCTCTGCCGTCCTCGCGTACCACCCCTGTAG 5045830 29 93.1 32 A...........................T GAGGGTCGGGCCGTACCGACCGGGAGGTCCCC 5045891 29 96.6 32 ............................G ATCCATACACCCGTACCTGACGCCGCTACCCT 5045952 29 100.0 32 ............................. ATTGGGGGTCCGGTCGGCTGCGGCACCGACCG 5046013 29 100.0 32 ............................. GACGAGATCGGCGGCTGGTCCGTCTCGCACAA 5046074 29 100.0 32 ............................. CAGGATGTGTTGAAGGCGTGGCATGCGGCGAT 5046135 29 96.6 32 ............................G CCGCGGAACAGGGCATCGCGCTGTCCGACCAC 5046196 29 96.6 32 A............................ CGGGGGTGCATCTGCGACGGCCGAGTGTCGAG 5046257 29 96.6 32 ............................G GTCGTGAGCAACCCCCGGCCCGGTGACCTCGT 5046318 29 100.0 32 ............................. TGGCTGACCCGCACCTTGCGCAGGCCGTTGGT 5046379 29 100.0 32 ............................. TCCGGCGGGTCGCGGCAGGGTCCCTAATCCTG 5046440 29 100.0 32 ............................. CCTGCAACGGGGAGCCAACCCGGTGACTAGCC 5046501 29 100.0 32 ............................. GGCGTACGGGGGCGGCGACCTGCGTGGGAGCG 5046562 28 96.6 32 .....................-....... GGGTCGAGTTCGACTTGGCCGGCGCAGTGCCA 5046622 29 100.0 32 ............................. GGGTCGAGTTCGACTTGGCCGGCGCAGTGCCA 5046683 29 100.0 31 ............................. TCCCGCATCAGCAGGTCGGTGTCGGGGCCCG 5046743 29 96.6 32 ............................G TCGGCTGGCACGCGGGACAGGCCGAGGGCCTC 5046804 29 96.6 32 ............................T GACGCTGCTGGTGGTGGTGCCGGCTCTGAGCC 5046865 28 93.1 32 .....................-......G AGGACCAGGCCGCGACGGCGGTCGAGCGCGAG 5046925 29 96.6 32 ............................G CCTCCGCTGGAGCCGGGGGTGATCTTCCGGGC 5046986 29 86.2 31 .....................TCT.C... GGTGGGGTGCTCCCGTAGACCCACGGCAGAC 5047046 29 96.6 32 ............................G CCGTGGCTCGCCCCGTGGCTGGCCGGACAGGT 5047107 29 96.6 33 ......T...................... TACGCCCGCACCACCGGCGACGTCTCGACCGCC 5047169 29 100.0 32 ............................. TGGGCGTCGGACAGGGTGTTGTACAGGCGCGT 5047230 29 96.6 33 ............................G AGCGGGCCGTCATCGACGTGCAGCGCACCGACG 5047292 29 100.0 31 ............................. TTCACGGCGGAGGGCGTGACCCGGCTGAAGG 5047352 29 96.6 32 ............T................ CCGCGGGCGTGGTTCGACAGCCTGGACCGCGC 5047413 29 100.0 32 ............................. TCGCCAACGACAACCAGGTCGACGCCCTCTGG 5047474 28 93.1 32 .....................-......G AGATCGGTTACCGGCTCGGTGCGTACAACCCG 5047534 29 100.0 31 ............................. CCGATCGGCATCGTGATCGTGGCATCGGTGC 5047594 29 96.6 32 ........G.................... GGCTTGCCCTGGTCCTCGTAGCGGGGCAGGGT 5047655 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 45 29 97.3 32 GTCGTCCCCGCACGCGCGGGGGTCTTCCC # Left flank : CCGCCGGAGATCTCGTCGAGCCACCACTTAACACGATCAGCGAGATAGCCTTCCCAGATCAACTCCCCGACCGCGGCGGCATCCAGCAGATGCTGCAGCAGCAGGTTGGGATACCCGCCAGCATTCGACTTCCCCCACAAGGCGGCAAGTGCACGGGCATGGTCCGACGACATGGCGGCGACTGTAGAAGCCACCACCGACAAATCCTTACCGTCTACACCTGTTGAGTCGCCTTCCCGACACAAGTCGACTTTGACCCACCCGGGTTCATTTCCGTGCTCGCGAAATCCCATCCAGCGAACCAGCCGTACGACACCGAGGGACAAGACCCTGCGTCGCGTCCGCTGGTGACCAGTGCTCCGAGTGCTCCGTAGGATTGAGCCACACGACGATCGAGAAGGCCCAGCCCACCACCATGACACCGAGACCCACAAAGCTGACCGATGAACCAACTGAATGATTCTGCGATGCCCATGCGATAAATCCCCAGGTCAGCAAGT # Right flank : GCGGTTCGAGGTGGTTCAGCCGGCGTCGACAGTTCGTCAGGCTCCCTCGTTTTGAAGCTTGCCGCTGGGATTCAGCATCCCACCTCCGCCGCAGTGCGGGGTGTCAGTCATGCCTGCTTGTGCTCCTGCGGGTTGTGGGGTGTGTATGCGCAGGGTGCAGCTGATGCGGCGGTGGTCGGAGGGCCAGGTGGTGGGGTTGTTGTCGGGTGGGATGTGGATTTGGTAGGTGCCGGGTATGACGGTGGCGGTGTTGAGGAGGGCGTGGTTGGCGAGGATGTAGTCGATGTGTAGGCCGTGGGGGCCGTTGGTGGTGGGTGGGAGTGGGGTGGGTGTGTGGGGGTCGAGTTCGGCGAGGTGGTGGAAGCCGGCGCTGTTGACGCGCTGGTTGGTGGTGGTGTTCCAGGTGCCGATGAGTCGGTCGATGGCGCGGGTGTCGGCGTGCCAGGTTCCGTTGTGGTGGTGGGCTTTGTGGTCGCGGGTGCTGGTGGGGATGTGGGTCC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //