Array 1 3230-3566 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZD01000011.1 Campylobacter concisus strain AAUH-10HCtra 1105565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================== ================== 3230 31 93.5 50 .......A..G.................... TCCGCGCTTTTTGAAGTGATCGGATACACATACGGAAAAAGTGGGTTTCA 3311 31 100.0 41 ............................... TATGCAGACATAGAAGTTTTGACTAACTACGAAAAGTTTCA 3383 31 100.0 46 ............................... ACAGAATAGTCATCGGTGAAAAGCAATATGCCGTAAGCTGGTTTTA 3460 31 100.0 44 ............................... ACAAAAGCAGGCATCATAAAACTAAAAAACACAATAACGTTTCA 3535 31 83.9 0 .......................AACA.G.. | T [3563] ========== ====== ====== ====== =============================== ================================================== ================== 5 31 95.5 45 ATCCCCTTGATCGGGTCAAATTTGTTTAAAT # Left flank : TTTTAGTAGCTTGGAGTGGTTTACCGACTCGAAAAAGTCTTTTACATCGGCCTTTAGTATCCAGCAGTCATTTTCGTTTATGAAACTGCTGGCTCTGTTTATGGCTTTGTAGGTGGATTTGTGTGGGCGGTAGGCGTAGGAATTTGATAAAAATGTCTCGTCGAAGTATGGACTAAGCTCTGAGTATAGGACTTTTTGAACTAGTTTGTCTTTTATAGAGGATATGCCTATGGGTCTTACGCCATTGCGATTTTCTTTTGGGATGTTGATCTTTCTTAGCGGTTCTGGCGTGTAGGTGCCATTTAATAATGAGCTTATGAGATTGTCTGCGTTTTCGTCAAAGTTCTTCTTAAAATCAGCATACGAGATCTCGTCTAAACCTAAAGAATTTGCAGAAATTTCGTCAAATGCAGAGCTTAAAGCAGCTTTTGTAAATATGTGTTCTAGATTTTTAGTAAACATTTTGAATTTACCTTTTTAAATGTGGTATGGGTCGCTAT # Right flank : TAAGTAAAAGAACTTATTTTAAATATCTTTAAAATCACAAATTTTTGAAATTTTAGCCAAAAAGATGGAAATTTAAGCTAAAAATCAAAAGTGGTGAAGGTACGCACAAAATATACAAAAAATAATAATTTTTAAACAAAAATTTAAAAATCATAAACATTTACCTTTAAATCATATATAATAAGACAATTTTAAAATCGAGCGTTGAAGTGAATAACGAAACTAATATGATCTTGACCTTTTCTAGCGATATAAGGGCGACAAGAGATAGTCTTGGCATGCTGATAAAACTACTAGAGCTTAATAAATTTATCCCCAAACTTAAAATAAATAGAAAAAATGCTCTAAAAAAGAGCATGGTGGGCGTGGTTTTAGACTATGTGAAGATAAGGAGTTTAGATGAGGTATGCCGAGCTTAGAGTGAAATTTGAGCCGTCACAAAAGCCGCCATTTTTTATTGGCTCGCAGGTGCGAGGAGCCTTTGGGTATGCACTAAAAAG # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.06, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCTTGATCGGGTCAAATTTGTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 4080-5630 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZD01000039.1 Campylobacter concisus strain AAUH-10HCtra 1105593, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4080 30 100.0 37 .............................. ACATAACTGGTTCTGTTGATTATCATCCCAGCAAAGA 4147 30 100.0 35 .............................. CATACCACGCCGAAAGCTCATCGAAATCCTGCGTT 4212 30 100.0 34 .............................. ACAAGCTCGTGAGATTTTGGCTCGAAATAAAAAT 4276 30 100.0 37 .............................. ATGAGTAGATAAAATGCTTAGTTTAATCATTGGTCCG 4343 30 100.0 39 .............................. AATGCTTTTTGGTTTAGCAATTTTAAGAGTTGTGAGGAT 4412 30 100.0 38 .............................. GCGTTTGCAATATTGCCGTTGTTGTTTTCTAGCATATC 4480 30 100.0 37 .............................. AAAGATCATAAGCTTAGCTTTAAAGTAGTGCTTATGA 4547 30 96.7 36 ..................A........... CGCCCCTAAAGCTACCAAGCCTAAAAGCCCAAAACA 4613 30 100.0 37 .............................. TATAGGGGCTATCTTATTTTTGAGCTTTGTAGTTGGC 4680 30 100.0 34 .............................. TCTATTGCTTTGTCGATTACGGCGCTAACCCAAG 4744 30 100.0 37 .............................. CTTGGAAAGAAAGCGACGAAAAGCAAACTTGGTCTAG 4811 30 100.0 36 .............................. AACTGGTGAAGTTGGCCTATAAGCTCTCCACTTCCG 4877 30 96.7 35 .........................A.... GCGTCACTTTGCAAAAGTCACTAACCGCTCCGCCG 4942 30 100.0 36 .............................. TTTATCGCCGTTGAAACAAAATCCCCTTATTTTGTA 5008 30 100.0 36 .............................. TCAACAGTCTCAGGCGACCAACAACCAACTGGAAAA 5074 30 100.0 34 .............................. GTAGATTGATTGATTGTATTGTTTGGCTGCTAAA 5138 30 100.0 36 .............................. AAAGCGTGGCAGCACCCTCTTTTCCATAACCAATAG 5204 30 100.0 34 .............................. ATTCGTCAAAAGCAGAATACAAAGATCGACGGCT 5268 30 100.0 37 .............................. GTGGTTTTGTTTCTTGGCGTGGCACCGAGTGGATAAA 5335 30 100.0 36 .............................. CCTATACCACTACCAGCAGTCCAAATGATAAGCTCT 5401 30 100.0 38 .............................. CACACTCAAGATACGTTTAACAACAAAGACTATAACGA 5469 30 100.0 34 .............................. GTTGAGCTTGTAGGTAAATTTTACAAGGCTAACT 5533 30 100.0 38 .............................. GAGATAAAGCTTGCGACACGACAATAAGACTTTTTTGC 5601 30 96.7 0 ...........G.................. | ========== ====== ====== ====== ============================== ======================================= ================== 24 30 99.6 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGTATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGAGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAAATTATCTCGCGCCTTTGTGAGACGCTCACGGTGGGTGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCCTATGAAGGCTTTGGGTCGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTGGGGCTTGGCGTATTTGCACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : CATATGTTTTCAACTTAATTTTTAGTTTGACATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGAAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGGTTTGAAACTACGTCTTTGCGATCAACTATGTAAGGTATGATAGCTGCGTGGCGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAGCAATACTTTAAAAGTGAAGTATCCTTGTAATCTATAAAATCAATTTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTCTCTTCATAATACTCTTGTTGCTTTTTATTTTGTGGCTGTGCTTGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 10353-9937 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZD01000014.1 Campylobacter concisus strain AAUH-10HCtra 1105568, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================ ================== 10352 32 100.0 44 ................................ GCTTTTGCCATTAGTCTTTCTTTTAGAGATGCCATTGTATTTAA 10276 32 100.0 40 ................................ CCATAGTGTTCTCCTCTGAATAAGATTTAATTTCATTTTT 10204 32 100.0 48 ................................ TTATACATATAGCTTCTCTTATTGTAAACTGTAGCTTAGGATATTTTT 10124 32 100.0 43 ................................ TGAATTCGTCTTTGTCTAAGTACCAGAATGGTTTTTTATTTAA 10049 32 90.6 47 ..............C..T.............A CTCCAGCGATGAACGCTGCAACTATCTTAGCTTAGCGAGAAATTTAA 9970 32 90.6 0 .............................TTT | A,T [9940,9959] ========== ====== ====== ====== ================================ ================================================ ================== 6 32 96.9 45 ACAAATTTGACCCGATCAAGGGGATTGAAACG # Left flank : AATGTTGACGGGTTGCAGAGGATGCATCGGCATGGTTACAACAGATTAAATCTTGTTTAATAGACCACATTTA # Right flank : ACATGTATATGTAAAATATTAGAAATAAAGGATATGGCAATAAGAGATCATAGAAGTAATAGTAAAAGTAGTGAATGTAAAAAAACAATCTTATAGTAAGTAAAATGTAAAAAGTATGATGATGAAAGTAAAATCAAAAATACAATGATAGTAACGGCAGTTAAAATAGAAATAAGCTTTATAATGTCGCTGTATATGGAGATATTATCTCTATAATCTATAATAAGTCTTTATTGCTCATCACATATCTCCTCATAAATTTTTGAGCCTATCTTATATAGTGTATATGCTGATATAGCAATTTTAGTTATAGCCTCTATGGTTGGTATTATTAAAATTGGCATGTTATCTACCTTTTTTGTCTGTTAAAACGTCGATAGCCTTTTTGGCAACATAAAACTCAATAGCAGCTTTAGCGAGCGCCTCTAAAATTAAAACAAATGGCATATTTAACCCTCCCATTTTTGATTTTTTACATATTGGCAAGTGACTTGCTACCA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAAATTTGACCCGATCAAGGGGATTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 66-626 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZD01000070.1 Campylobacter concisus strain AAUH-10HCtra 1105625, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 66 37 100.0 35 ..................................... GGGATGTAGTTTAGATTCCTAGCGATTTTATCGCC 138 37 100.0 42 ..................................... TTATCTCGACTTCAAGTAATTCAGCTGTTTCTACAGCAACAT 217 37 100.0 39 ..................................... TTTCTTCGCAAGTATTAGAAATATGATTGATCCTACGAT 293 37 100.0 36 ..................................... GATCTTTAATAAATTGTAACATGTTGAATCCTTTAT 366 37 94.6 37 ......................CA............. GTACTAAGAGATCATATAATCCCCATCTAACCTTATT 440 37 97.3 40 .......................A............. CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 517 37 94.6 36 ......................CA............. GATCTTTAATAAATTGTAACATGTTGAATCCTTTAT 590 37 97.3 0 .......................A............. | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 98.0 38 ATTTAAACAAATTTGACCCGATTTAGGGGATTGAAAC # Left flank : AATTTGACCCGATTTAGGGGATTGAAACTTGTTTTGTTTCTCACCTTTAATAACTACTGAATAGTA # Right flank : CCATTATAGTTAGCATTAAGTTTCTTAATAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATTTAGGGGATTGAAAC # Alternate repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //