Array 1 145977-146797 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOZH01000258.1 Salmonella enterica subsp. enterica serovar Derby str. 626 SEED0626_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 145977 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 146038 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 146099 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 146160 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 146221 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 146282 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 146343 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 146404 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 146465 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 146526 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 146587 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 146648 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 146709 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 146770 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163437-165297 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOZH01000258.1 Salmonella enterica subsp. enterica serovar Derby str. 626 SEED0626_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163437 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 163498 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 163560 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 163621 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 163682 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 163743 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 163804 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 163865 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 163926 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 163987 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 164048 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 164109 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 164170 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 164231 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 164292 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 164353 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 164414 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 164475 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 164536 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 164597 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 164658 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 164719 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 164780 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 164841 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 164902 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 164963 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 165024 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 165085 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 165146 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 165207 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 165268 29 93.1 0 A...........T................ | A [165294] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //