Array 1 299-1017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXG010000117.1 Romeria aff. gracilis LEGE 07310 NODE_603_length_6787_cov_26.2808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 299 29 100.0 34 ............................. GCTTCTGAAAAACTCTCATGAATGGCATCTAAGG 362 29 100.0 34 ............................. GAATTTATGAACACCAAACTAATTGTTGCTACAG 425 29 100.0 33 ............................. GGGCCTATTTCAGTCGAGATGGCCGCGAACCAC 487 29 100.0 34 ............................. ATTCTGCCGCCATTTCTATTCTGAATATCAATCG 550 29 100.0 35 ............................. CAGCACTACAGGCAGTTGTCCTTGTTGGATGCTGA 614 29 96.6 34 ..........T.................. CGGGCACAGTCCGCAATTAGACAGCGTTCGGTTC 677 29 100.0 35 ............................. ACGCCGACCGGATTTGCTTGCAGGCGAGTCCGGTC 741 29 100.0 33 ............................. TATCGTCCGGCAGCATCCTTAATCACCGTCACC 803 29 100.0 34 ............................. CACAATGGCCGCCTGAGATTGCTTAGCCTCTTGA 866 29 96.6 32 ............................T GCAAGACATGGCCACTTTCTGCCGCAACTTTA 927 29 100.0 33 ............................. TACTCAAGAGCCTCAAAATCGAAGGGATTGCGC 989 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 12 29 99.4 34 GCTGTCCCCACGCCTGTGGGGGTGAACCG # Left flank : AGAGAGTTCTGCCACATTCGCGGTTATTTATCGACTCTGAAAAAGCAGAACCTCAACATCTTGGATGCATTCGTCGAACTTTTTTCCGGCAATGCTCCCTCTCTTCTCCCTCAGCCTGAGTAGTTACCCCTTTTTTTTGCCTGATTGCAACCGTCTCCAAATGGCGCTGACGCTGCCGTCCTGTCTCACGCTGGTTCGGCTAAACCCGTCAACCGACTTTTGCTACCCGACTACTCCACTGTCGCCTAATAGGGGGTGAACCGCTCGGCTACGGTGGACAAGACTTAGAAAACATTTAG # Right flank : GTCCGTAAGACCACGTGTTAATCAGTCAAAATGGGGTCGCCGTAGAGGTCTTTTGCCGCGTCACGGTTAATTGGATACTCAGACCCGATGGCAAAACCGATGATCTATTTTTCCCAGCTTCGATTTTTGCTTCCCGGTGTTAGCACTCTATGAAGACGTGGTTTTGAACGAGATGAATCTGCCTGAGTGCAGCAAAAGTAGCTGTTTTCAGCCGCGCCACAGGTTAAATTAGGATTTGCCGTGCAGATAAGATGTCCAATGCTTGAGTCATACCGCAAACAGGTCGAAGAACGCGCCCAGCTAGAGATTCCGCCGCTGCCGCTGACTGCAGAGCAGACCGCAGAGCTGTGTGAGCTACTGAAGCAGCCGCCAGCGGGCGAGGCCGAGTTTTTGCTACATCTGCTGCGCGATCGCGTTCCCCCCGGTGTAGACCAGGCATCCTATGTGAAGGCGTCGTTTTTAACCGCGATCGCCCAGGGCGAAGCACAGAGCCCTTTACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTCCCCACGCCTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10-2018 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXG010000011.1 Romeria aff. gracilis LEGE 07310 NODE_17_length_101812_cov_25.0867, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================================================================= ================== 10 37 100.0 34 ..................................... TATCTCTAGACTAAATGAACCATAGTCCATCGGC 81 37 100.0 35 ..................................... AAGGACGGGTTCCATGGCATCGATAATCCTCAGCT 153 37 100.0 34 ..................................... ATGGCGATTATCCAGTCCACAACCAATATCCAAC 224 37 100.0 34 ..................................... ACACAAGTTAGCCGTTCATCTTTACGATAAGGTT 295 37 100.0 34 ..................................... CTCCAGGTACAGAGTATGGCTAGCATTAACTACC 366 37 100.0 36 ..................................... AACGCCGAATACACAGAGAAAGTTTCGGCTATTGCT 439 37 100.0 35 ..................................... CAGGTATCGAGATACCTAATCGAGGGTGGAGGGGC 511 37 100.0 35 ..................................... AGAACAATCTCAACAATCAACCCCACCGCCACCCG 583 37 100.0 34 ..................................... CCCAGGTAGGTGGCTGGAGCCAGCAAGGAATATC 654 37 100.0 36 ..................................... GATTGTTGAGATTGTTCTAACAGCGATAATTGAGCT 727 37 100.0 35 ..................................... AACCACTGTTCCAGGTACAATCGCGCCGCCAAAAT 799 37 100.0 35 ..................................... GACTAGTAGCGCTTCCATCTGGGATGAAAGAGCAG 871 37 100.0 38 ..................................... CGAGGTGGCACGCTGTTCGGGAACACGATAGACAGCGG 946 37 100.0 35 ..................................... CGCAACTAGCGATAGCCATGCTTTGCAGCTAGCCT 1018 37 100.0 40 ..................................... AGCTTCTACTTCCCCAGGATTGACGCGCCTGTGGTTACCG 1095 37 100.0 36 ..................................... AATGATTGTAGCTCTATCGCCACGGTTAGCGATTAC 1168 37 100.0 36 ..................................... ATCTTTTTCTCTGTGGACAGCGGTGCTAGCTACACG 1241 37 100.0 35 ..................................... ACATGCTTCCTGCACGGCTGTATGGATATCAGCTT 1313 37 100.0 34 ..................................... TGGTTGACATCCTTGCACGGGAGATGGGCGATCT 1384 37 100.0 33 ..................................... ATGAGAAAACAGGTGTATGTCGAACTCGACACC 1454 37 100.0 35 ..................................... ATTAGCTGGGCGGAGGGGGTGTTCGACGAGCTGTC 1526 37 100.0 35 ..................................... AGATACACAGAGCATACAGTGGCGTTCACCTTCAG 1598 37 100.0 34 ..................................... AGAACATTGGCAAAAGCTAGCCCTGTCAGAGGGG 1669 37 100.0 35 ..................................... GTCGAATTGGGAACAGCTGGAGAGTTGTCCCCGGG 1741 37 94.6 205 ...................................CT ATTGTTAGAACTCGGGGACAATACTGCTTCGCTGATCAAAGCATCAATCGTGAGCGATCGACCCAACCAAATTCAGCCAAACACAATCTTTGAACTACGGGCAGGCCAAGACCAAAATCGGGCGATCATAAACCAGATTTTGCGGCGCGATCAGGAGCGAGGCAGCTAATGTCAGTTAGGGTGAATAGCTGAGGTTGGAGGCGCG 1983 36 73.0 0 .T..C....TGG.....G...-.....A..C....G. | ========== ====== ====== ====== ===================================== ============================================================================================================================================================================================================= ================== 26 37 98.8 42 ACCGAAACCAACCCAAACCCCTCTCAGGGATTGAAAC # Left flank : CCCCCAAGCA # Right flank : CAAATGGTGACACCATGACTTAGCGCGGTTAGCTCTAGCTGGCATGACACAATAGAGATAGCTAGACATGGAACGCTGGATAGGTTCAGGAGATACAGATGGTAGTGCAAGTAAAGCCCTCGACCGACTATGAAGCTAAGACCCAGAAAATTGCTGAGACGCTGCTAGGGCTGACCCGCAATAATCGCTCCTGGCTGGCCCAAATGCGCGACCAGATGCGCTGGGATGACAAGCTGCTGGGCTTTGCGATGGCCAACCCAGGGCTGCGGGTACAGCTATTTCGGCTGATTGACTGTATGCCCGCGCTCGAAAGCAAAGCCGACGTCGCCTGCCACCTCCAGGAATATTTGGACGATCCCACGGTCGAGCTGCCTAGCGCCCTCAAAAGCCTGCTCAACTTTACCCAGCCCGACTCGATGCCGGGGCAGCTAGCGGCTTCGACCCTAAATACGGCGATGGAAACCCTGGCGAAGAAGTATATCGCTGGGGAAACGATTGAG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.64, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCGAAACCAACCCAAACCCCTCTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 1 84471-83166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXG010000016.1 Romeria aff. gracilis LEGE 07310 NODE_22_length_89041_cov_23.169, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================================== ================== 84470 35 100.0 39 ................................... TCCTCCTCCCACGAGGGAGAGGATGATCAGGAGTATTGC 84396 35 100.0 38 ................................... TCTCATTCCAATCAAAATGGAATGTGAGCGAGGCCTCG 84323 35 100.0 38 ................................... AAGCGAAAGCGAAAGCGGTGAGAGCGAGGGCGGAAAAT 84250 35 100.0 41 ................................... CTCCTTTGGGGGTATTCCCCCCGATGTGAATGTTCACCTAA 84174 35 100.0 38 ................................... CCTTAGCTTCTGAAGAAAAGTCTGAGGTTGAGAAGTTA 84101 35 100.0 32 ................................... TCAATCCCAGCCGCGTCTACCTCACTCGCACT 84034 35 100.0 38 ................................... CCTTAGAAAAACTCATAACACGAATCCTTTCGAAAGAG 83961 35 100.0 54 ................................... TAACTCGGCTTCAGCCTGCTTCCACCCACTAGTCATCGTCGCGTTACTGGGAAA 83872 35 100.0 40 ................................... CCCCAGCAGCTGCATTGCACACAGCTGCGTTGAAGACGGA 83797 35 100.0 40 ................................... TCCATCCAACGACATTGTAGCCGTCGCATTAGTAGAATTG 83722 35 100.0 38 ................................... CCGATGGACCAGAAATTAGAATAACCAACTCCTGAAAC 83649 35 97.1 39 ..C................................ AGGTGGAGCTCCACCCCGGCATCGCGGTCCCACATGGAG 83575 35 100.0 41 ................................... CATCCCGTCGGATTGGTCGTAACCAACCCATTGAGTTGGAT 83499 35 97.1 37 .........A......................... AGGAGAAGGTTTCTGAAATCCGAAAGAGTCGCGATTT 83427 35 100.0 39 ................................... GCGCCAAGCTGATCTTCTAGGATCTGGAGAAGATTGATT 83353 35 100.0 40 ................................... ACTCACTCCGGTGAGTGAGCCACCCGAGTAGAACCCGGAC 83278 35 100.0 43 ................................... CACTTTGGAGTGGCTTTTTTCCAGAGGCTGACTCCTGCAAGAG 83200 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================================== ================== 18 35 99.7 40 CTTTCAGCTCAAATTCCCCGCAAGGGGACGGAAAC # Left flank : TATTGCCGACGATCGGCGGCGCACTAAGCTGTCGACTTTTTTGGAAGGCTATGGTCGCCGGGTGCAGGAAAGCGTATTTGAATGCTATTTAAGCCTGGCAGAGATGAAGGCGCTGCATCAGCGGATAGCACGGCGGGTAAAGCCAGACGAAGATAATGTCAGGCTGTATTGGGTGCCGGTGAATGCGCTGGCCAGAGCGCTGACCATCGGCAGCCCGCCCCCAGAACCACCGCCAGAATCGTATGTCATTTAGTTAAGTCAGCTCGCAGATGGCTGAGAACTAAGGTAGGTTATTCCTGAAGGTAGCCCGCCTCCACACCCCCTGCGAACCTTGAAAACCGCATAGTTTCGTTGACCTATGGAGATGCCTTGCTGTATCTAGCTTTCAGAGCCTGAAAAAGGCCAATCAGGTCGGCTGAGTGGAGCATTCCGTCCTCAGACTTGACCTCTGGAGATTTGCCCGCTAGAATCAGCTCCAGGCAAGGCTTCCTCAGAGAGGG # Right flank : TCTGGGGGTTGTCTATACGCGATCGCGCAATCTCCTGGCCTCTATGTTGCTGCACAGTATCTGGAACAGCGGCTCCCTGGTAGGGTTACTCATTCTTGCTGGGGGAGCCAACTAAGGATGGCTTGAGGATTTGGACAATAAGGTTAAGAAAAAATCGATTTTCTAAAAATTTTAAGCAAATCCCCCTACTTTAGGCTTATCTTAACCCTTGACGATACCTGAGAAACTATATGGCAAGGTCTAAAGGTTTTTTCCAGCTGTTATTTGATTTCTCATTCTCCGAGTTTATTGCTCTGAGGCTGGTGGGCTTTCTCTATGGACTGGCTATTTTCTTCGCTGGACTGGGATCGCTGAGTATTCTTCTAGCGGGCTTTAGAGCTGGAATTGCTCAGGGTTTAGGGGCCTTAATCTTGGCACCCCTACTATTTTTGTTTAATGTGATTCTGGCCCGGATCATTCTAGAAACCCTGGTGGTTGCATTTCGGACTGCAAAGAATACC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGCTCAAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 442-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXG010000144.1 Romeria aff. gracilis LEGE 07310 NODE_2536_length_2060_cov_15.9757, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 441 37 100.0 39 ..................................... AACCGATGTTCCGGGCACAATCGCGCCGCCGAATTCCTG 365 37 100.0 37 ..................................... AAAGCCCGGAAGGGGAGCGGCGAATATGGGATCGGGG 291 37 100.0 36 ..................................... AGATCGATGGATCAGTCGATCTGGACATTTATTCAA 218 37 100.0 36 ..................................... AAAATTGATCGCATTATTGCTCCCCAAATCTATGGG 145 37 100.0 34 ..................................... CACCCGGCTGAGCCCCCTCCTGTCGAAACAAAAA 74 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 100.0 37 ACCGAAACCAACCCAAACCCCTCTCAGGGATTGAAAC # Left flank : AGCGTCGGACTAAAATCCACAAAATTCTGTCATCCTATGGGCAGTGGATGCAGTTCAGTGTCTTTGAATGCAGTCTGACGGCTACCCAATACGCCAGATTGCGAAACCGCTTGAATAAGCTGATTAAGGCCGAGGAAGACAGCGTCCGCTTCTATTTTCTCTGCGCATGCTGCCAGCAAAAGGTCGAGCGCATCGGCGGTGAACAGGTACGAGATGATACGGTCTTTTTTGCTTAGGTTTCAGCTTCAGGCGCGAGTGGGTAGGTGTTTAATCCGCAGGTCTCCGAATACGGTACTGAAACCTTTATCAGTAAACCGTTTCAGCGTTATGGCAATTGCTATAGATCGGCGCAATGCCCCTAAACCCCTGATATCGCTTAATTCCACAGCTAACTTCGCAGACTCAAAGCCGCCGCCACGGGGTCTAAAATGCTATAATTCAAACGATTCGCGCACTCGAACCTCGAAAACTAGATATATCAAAGCTTTCAAAGGCCCGCT # Right flank : CGGGCTGAGAGCACTCCCCGGACCCCACCCCCAAGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCGAAACCAACCCAAACCCCTCTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 1 59392-63639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXG010000024.1 Romeria aff. gracilis LEGE 07310 NODE_40_length_64824_cov_26.3492, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 59392 29 96.6 34 ............................C TATTACGTTCGTCGGAACCAAATTCAAAGCAAAC 59455 29 100.0 34 ............................. AATTGGGACAGACAGCGTGCCCCGACCGTCGTAT 59518 29 100.0 34 ............................. GATCCGATACCCAACCCGCCCGAAGAGTACGTTG 59581 29 100.0 35 ............................. GCAGGCCACTGACTATCAGGTCAAAACACGCTGCT 59645 29 100.0 35 ............................. TTATGGAAGAAACACTTTTGCTTGAGCAAAACATC 59709 29 96.6 34 ............................T CTTACATCCAAGGCCAACGCAGCAGTTCTAGACG 59772 29 100.0 34 ............................. TTGTTTATGAAGGACGTGTGTCTAAGAAGACTTT 59835 29 100.0 34 ............................. TAACGTACGCGAATACTGGTAGACAATGGGACGA 59898 29 96.6 34 ............................A GCCCGGCGGGGAATTCAGCGAAGGGGAATATTAC 59961 29 100.0 35 ............................. TCCGGTCATACACTTTCCAGCTCACTGATGCCGGC 60025 29 100.0 34 ............................. GACATCCCGAGCGGCGAACATGAAACCGGGGCCG 60088 29 100.0 34 ............................. ATGTGTCCACCCAAAGCATGTAGTCTTTTGGGTT 60151 29 100.0 35 ............................. GGGCTACTAAGCACCATGACCAGCGCCACCCCTGA 60215 29 100.0 33 ............................. AATCACTGGCAGCAAGCCTAGACCTCGAGCAGA 60277 29 100.0 33 ............................. CATGAATGCCCTATCCAATCTAGCTGAGATTTC 60339 29 100.0 34 ............................. CGGCTAGCGGCAGGCGCTATTACCGGCGTGGCTA 60402 29 100.0 34 ............................. GGTACAAGTCCTTGGTAATTCCTGGTCGATACCC 60465 29 100.0 34 ............................. TTGTGGTTAGCCAGATTCAGATTCTTGTCGATAG 60528 29 100.0 34 ............................. AGCTGGTCAAGCTGACCGGTGTAATGGCGGTTAA 60591 29 96.6 35 ............................T TATTTCTATTCGGTCTTTCATCCATGCCGACACCC 60655 29 100.0 34 ............................. AGAAGCATCCCGACTACTCTACAGACTGGCCCAC 60718 29 100.0 33 ............................. CATAGGGCTAGGGAATGGGCTTGCCCATACATC 60780 29 100.0 33 ............................. TCATGGGAGTGGAGTCCTGAATTGGAGGAGTAT 60842 29 100.0 34 ............................. CGATCGAGCCGTTACCGCCATTGCTTTTCTTGCC 60905 29 100.0 33 ............................. AATTCGTCTTCAGCTACTAACATACGCCCGGAC 60967 29 100.0 34 ............................. ATGGCCTAGCCACATTTGAACTTGGTTATCAGGG 61030 29 100.0 34 ............................. ATTACGGCGCGGGATGACCGGGATACAGGGCAGT 61093 29 100.0 33 ............................. CTCTTAGCCGGTGGAAGACAGAGCCCATGGTTG 61155 29 100.0 34 ............................. GCTATTCGCAAAGCCCAGAAACGATTTGGAAAAG 61218 29 100.0 33 ............................. GCATATGTCGAGCCACTAGAAGCAAAATTGGAA 61280 29 100.0 34 ............................. CCCGCGACTTACTTAAATCGGTGCGCGGAAATAC 61343 29 100.0 34 ............................. CTATTAGAAAGGATTGGTGAATACGAGGACATCC 61406 29 100.0 35 ............................. GGTGATGCTTCCCGCCCTAAACGCTTGCAGCATTC 61470 29 100.0 34 ............................. CGAACTAGCAAACGACGCAGGAATCGTAATGTTA 61533 29 100.0 35 ............................. ACCTAAGTAAACAATTGTCTACCCAGGCCCCTATC 61597 29 100.0 34 ............................. ACTCAAGGACAGTGGGCGGCATTCAAACGGACTC 61660 29 96.6 34 ............................A GAGTTTGAAAGCAGTTTTGAGAGCTTTGAAGGCC 61723 29 100.0 34 ............................. GAGGTAGCGAATAATGGTAGCCCTAAAACCCGTT 61786 29 100.0 32 ............................. GAAAGGGAGAAATCGATGTAAGCCCGTGCGAC 61847 29 100.0 33 ............................. CACGTCGCCCCTACTCCCGAACCGTCGAAGGTC 61909 29 100.0 34 ............................. TTGGGGGGAAATGGTATGTGATGGTTTCAAAGAA 61972 29 100.0 34 ............................. TAGTCACAGAGATAGCCCAGACGCTGGTAGAGCA 62035 29 100.0 35 ............................. CATTCCTTCGTAGACGGTAGGAGGGCGAGCTGTAC 62099 29 100.0 35 ............................. TTTTCTCCGACTTGTACTGCCCCTTCTAAGGTTGC 62163 29 96.6 35 ............................A GAGCGCGACGTATGGGCATCAATGGGGCGTCAGCA 62227 29 100.0 34 ............................. CGTAACCGGTTTAGCCGGGCGGTTGCCGCTGCTT 62290 29 100.0 34 ............................. TCGTACTCCTGAGGTTCGGTGGTCTGGTCTTCTA 62353 29 100.0 34 ............................. CCTTTAGCCCACAGCTCATAAAGGCATTTTCGGC 62416 29 100.0 33 ............................. GGTGGCTATCTTTGCCTTGCCGACTGGCAGTAG 62478 29 100.0 34 ............................. CTATAAGTGTCTTCAACGGTTACGGCTTCAATCC 62541 29 100.0 33 ............................. ATTCTAGGACTCCAGCTGGTAGAGTTGGGTAGC 62603 29 100.0 34 ............................. TTGCCGACGGCCAGGACGACCACGAAATCGACGC 62666 29 100.0 34 ............................. CTTGCACCAGGGTCGGCAGCGCACCCAATACGAC 62729 29 96.6 35 ............................C GATGATGGTGACGAAAAGCAGTTAGAGTTTCTTGC 62793 29 100.0 34 ............................. AACCCGTTGAGGTCACCCCCGCATGAAATAATCA 62856 29 100.0 33 ............................. GTCTGCTGACTCAAGATGACGCCGCCAAGATTA 62918 29 100.0 33 ............................. GTCCATATCCCCACCCCCGAACCCTAATATTCA 62980 29 100.0 34 ............................. TTAAACGCCCCGATGGCTGGCGCTACCGGATGGC 63043 29 100.0 35 ............................. TCGTCCTACATTGAGCTAGTAGACGCGGTCGGCAC 63107 29 100.0 35 ............................. CCATGGGGTGTTGGGTGCAAAAGGAAACTAACTCA 63171 29 100.0 34 ............................. CCGCAGCCAGCGGCCCACCGTACAGCGAGATACG 63234 29 100.0 35 ............................. CGTATCCTCCCAGGTAGGCCAATGACGCTAGAGAC 63298 29 100.0 34 ............................. TCCCCGGCGATGTCCGATAGGACGTTTTTGTCAA 63361 29 96.6 33 ............................T TATTATCATCGAGCTGCGCCTGACTGAAGCCGA 63423 29 100.0 34 ............................. TTTACGTGACCGGCGTTGGGGGCGAAAATGGTTG 63486 29 100.0 33 ............................. CGTACTAAGACCCAACCCATACCTTATCTTTTA 63548 29 100.0 34 ............................. GCGGATTGTCTCGGGTCAGAAAAATGACATAGAG 63611 29 82.8 0 ..................A.T..T..AT. | ========== ====== ====== ====== ============================= =================================== ================== 68 29 99.3 34 GCTGTCCCCACGCCTGTGGGGGTGAACCG # Left flank : GGAAACATATTTTGACCTCGATAGGGTCGTTCGCCGTAAATGCCGAGATAGGTTCAATGACTATCGCCTGATGCATCGCCTGGTTCAGGATATTGACAAGGTTTTAAGCTTTGGTCATGAGGATGAAGCGGAACCAATCTGCTTCCTGTGGGATGACGTTTTGGAGTCGGTGGAAGGCGGAAAAAATTGGTCCGATAAGGAGGGCTAAATGGTGGTATTCATTCTCGAAAATGCTAAGCCTGCCCTGAGAGGAGAGCTGAGCCGCTGGCTGTTTGAGATCAAGGCAGGAGTTTTTGCTGGCCGTATTTCTGCTTTGGTTCGAGATGAGCTATGGGAGCTGATTGAGCAGAAACTTGGAAAAGGCTCTGCCGTCATGCTCTATTCACAGCGGAATGAGCAAGGCTTCGATGCCCGAATGCTTGGAAATCCCTCTAGGGCTTTAGTAGACATAGAGGGTGTACTACTGGTAAAAGTTCAATAGAATCAACCGTTTTGCAAGT # Right flank : GTCAAGGCCGTAGCGGTGACGTGACAGTCAGTTGTCGTGATGAGTGACATTTGGTAGAGACTACAAAGACTCATCGTGAGACTCATCGAATACAAGTACTGGGTGGCATCAGCGTCAGACGGCAGCCAGTGATCAAAATGACACTGCGTGATCAGTTAAAGAAATCGGGTGCATGAGGGCATTCTCTGCCGTGCTAGTCTTTGTTTCGAGTAGTAGCTGCCTGCTGACGGTAGCTTTTGGCCTTGATTTCAAAGATGACAGCATGATGAACGAGGCAGTCAACGGCGGCCACGGTCATCATTGAGTCAGGGAAGATGCTATCCCACTGACTGAACGGCTGATTGGCCGTAATCAGTAAGCGCTTGCGCTCATAACGATGCGCGATTAGCTCAAAGAGAACGGAGGTTTCGGCCTCCGACTTCTGGACGTAGCCGAAATCGTCCAGAATGAAATGAGGCAGTTAGTCGCTTTATCTAGCCAGCTAGCGTCATCGGCAAGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTCCCCACGCCTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //