Array 1 7993-3539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQI01000088.1 Methanosarcina mazei strain 1.H.A.1A.4 scaffold21_1_size50595-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 7992 37 100.0 35 ..................................... CTTCTAGTATTTTTAAATTGTTTCTCAGCGCATTT 7920 37 100.0 35 ..................................... CAGACAGACTTTCAACAAAGGTTTCTACAGGATTT 7848 37 100.0 35 ..................................... TGATACATCATTTCAGGTGTGAGTTCTTTGTTTCC 7776 37 100.0 39 ..................................... TCCCTGCTGCACACAAAGCCGCAGTTGATGATATGAAAT 7700 37 100.0 37 ..................................... ACATGAATATCCTGAGTCATAAATCCAATTTTTTCAG 7626 37 100.0 34 ..................................... TCCAGATGGTATTCCCGATGAGGCTAAAATGGTT 7555 37 100.0 35 ..................................... TTCACCCACCGCCCAAGCTTTTCATTGTATACATA 7483 37 100.0 36 ..................................... CGAGTACTCCGGTCTTTTGATAGTCTACCAGTGCAG 7410 37 100.0 35 ..................................... TGCAATTCCACAGACTCAGTGAAACCCATGTCAAA 7338 37 100.0 38 ..................................... ATAAAACTGTAGAAGAGTACGCAAAACAGCATAAAGAA 7263 37 100.0 36 ..................................... TTCTTCCAATCCAAATTCGCAAGGCGGCACGTCCGT 7190 37 100.0 35 ..................................... AAAAAGAGAAGTACAAAATCGAACTAATTCTAAGC 7118 37 100.0 33 ..................................... TTTCCTCCCATTATGATATTTGCATTTCTTATT 7048 37 100.0 37 ..................................... TGCAATGTCGGGCAATCCTGGTCAGTCTCGGTCTATG 6974 37 100.0 35 ..................................... CTCATTGTATAACTTCCTTAATTTTCTTATAGAAA 6902 37 100.0 35 ..................................... TTTTCAGGTCACTATGTAACGTTTTTCTGTGTTTG 6830 37 100.0 34 ..................................... AAAAAGAATCTAAAAAATAAAAGATGAAGTTAAA 6759 37 100.0 36 ..................................... GCTTTTCCTTGAATATCAAACCAGTTATTTTTCCAT 6686 37 100.0 32 ..................................... TCTGAGAGGCTCAAAAACGTCATTCATGGAAA 6617 37 100.0 35 ..................................... AAATTATTTCCATGCATCCGATTAAGCACGGTTAA 6545 37 100.0 34 ..................................... TCGGATACTCTTATCTTTCCTACGACCTTGCATG 6474 37 100.0 36 ..................................... TGTAATTCTGTCGCGGCGGGGCTGTTGAGTGCTGAA 6401 37 100.0 33 ..................................... CTTAATTCTTCATTGATCGCCAATAAGTATAAA 6331 37 100.0 34 ..................................... TGATTACAATCGTAGAATCAGCTAAAATCAAGGT 6260 37 100.0 37 ..................................... TAACATTAGTTACATTGTAGTATATACAGCAACATAA 6186 37 100.0 36 ..................................... TTCGTGAATTGATTGCTGAAAAAAGGAAAAGCGTAG 6113 37 100.0 35 ..................................... TTCCCCCCCAATCGACTACAGCAAAAAAATTATTT 6041 37 100.0 35 ..................................... TTGTTATTCTGCTTTTTTGCTTTGAGTTCTCCTGA 5969 37 100.0 35 ..................................... TAATAATGCTAAACTCACGGGGAACGGCGTAAATC 5897 37 100.0 40 ..................................... ATTCACTTCTAGAGTAATATATCCCATTTATCCAGATTGA 5820 37 100.0 35 ..................................... AACATTGTTATTCCTCAAAAGCGGTTTCCATTCCT 5748 37 100.0 35 ..................................... CGATATGCTGTATATGTCTTCCGTTTCGATTTTGT 5676 37 100.0 35 ..................................... ACTGCTTCCATGACTGCATTTTCCACAAGGTCAGC 5604 37 100.0 36 ..................................... CTTGGGCTGAACCGGCTGCCCCGTCGTTGACTTTTG 5531 37 100.0 34 ..................................... TATTCAGTTGAGTCTGTCGCCAATGCTTCAACCC 5460 37 100.0 34 ..................................... CAATGGTATTGTTCTCAGCAAGTGAGGCAACAAC 5389 37 100.0 35 ..................................... AATAATAGAAATTACATAAGTAAGTATTAGTTAAG 5317 37 100.0 35 ..................................... CTAGGGCTGTGTGTAGTGTGCTTTCTGCTGTGGCT 5245 37 100.0 36 ..................................... TTATATGGGTCAGACTCCCAGAACTGGGCGGCGGTC 5172 37 100.0 37 ..................................... CAAATCTTCTCAATATGGCCTTTCTCAGGCTCTCTAT 5098 37 100.0 35 ..................................... TTGTCTGTTTTTGCTTAGTGTTCTCCCGTAGGTGT 5026 37 100.0 34 ..................................... CAGTTCCGCCCGCCGCGATTGTTTTCTGTATCAT 4955 37 100.0 39 ..................................... TAAATGTGGTCAGATGAAACACATCGCAGGAGTGGGCGG 4879 37 100.0 36 ..................................... TTTCCGTCTATACCATACTCGTTTTTCATCTTGGTA 4806 37 100.0 35 ..................................... TGAAAGTCGGAGCCACACAAAAAGAAACGTTTACT 4734 37 100.0 35 ..................................... CCGAAGACCTTCTGACCGAGATGCAAGCGAGGGAG 4662 37 100.0 37 ..................................... AAAGCTACATCCCCTGGACAGGAATAAACGAGGAAAC 4588 37 100.0 40 ..................................... GTGGTTGACCACAAATTAACTGTTACGTTCACACTATCGA 4511 37 100.0 34 ..................................... TGATAATCCTGGTGTTCTTCTCACTGACAATTTT 4440 37 100.0 35 ..................................... AAAGTTTTTTCTATCTCTGCAGCTAGAGCTTTAGC 4368 37 100.0 35 ..................................... CCCTCTGAATCCACTCCATGAAAATGAAGCACTTG 4296 37 100.0 34 ..................................... AATACTGCTGCCGGTCCTGCTCCATATTCTTCTT 4225 37 100.0 36 ..................................... CAGACAATATCAGCAGGTGGAAAGAGGGGGATTTTT 4152 37 100.0 36 ..................................... CAGGAGTAGCTGTAAAAGATCCTGCTGTAACAAATT 4079 37 100.0 34 ..................................... TCATCAGAAAGCCCGCGTGAATACTTCATTTTCT 4008 37 100.0 34 ..................................... TTGCAGGTTTCACCGGTTATGTCACATGTTACAG 3937 37 100.0 35 ..................................... CGGTTCAGGACTCGGTAGAGCACTATTCCCGAAAG 3865 37 97.3 35 ..................C.................. TCTGAGGAGACCACTAAAGCCAGTCGGACCCACTG 3793 37 97.3 36 ..................C.................. AATGTATACGTCCTATATTAACAGGTATAAAAACGG 3720 37 97.3 36 ..................C.................. ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 3647 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 3575 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ======================================== ================== 62 37 99.7 35 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCTGAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAACT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 31257-23559 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQI01000110.1 Methanosarcina mazei strain 1.H.A.1A.4 scaffold18_1_size54713-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 31256 37 100.0 36 ..................................... CATGAGCTTCCAAGGCGCGGGATGGTCGAAACCTGG 31183 37 100.0 35 ..................................... ATTGGTTCTGGATACTCAGACCAACAAAAAAACTG 31111 37 100.0 34 ..................................... GGGCATTATTTAACCTCATAGATCCTCTATTCCC 31040 37 100.0 34 ..................................... GGACATACAGGCTTTGCTTTCGCTGTCGTGCCGT 30969 37 100.0 35 ..................................... AGTATCTTGTTTTCTAATTCCAACCTCTTATTTTT 30897 37 100.0 37 ..................................... CAAGGTCATATACTCTGTTTTTTAGTTCTAGAATTTC 30823 37 100.0 35 ..................................... CATGGATCTCTCTGTCTTCGTAATCTTTAAGTGGT 30751 37 100.0 33 ..................................... TTATCAAGATGTTTCCAAGAGTAATAAATCCGA 30681 37 100.0 35 ..................................... CAGTCTCGCTCATCTTTAGTTTCCTCCTATTTTAC 30609 37 100.0 37 ..................................... AAAATGTATTTTCCAGCATCAGTAACCATAGCAAGAA 30535 37 100.0 37 ..................................... CTCTCTGAAATTTCTTCGTTTTCCTCTGTCATTCCGA 30461 37 100.0 36 ..................................... GACGGGTTGCTGCTTCCAAAAGTTCGGGAAATTCAA 30388 37 100.0 34 ..................................... TTACTCTGCTTTCTCTATTCGGTTTATATGCAAG 30317 37 100.0 36 ..................................... CACATTAAAATAATGAAATCTGTATTTGCTTTCAAC 30244 37 100.0 34 ..................................... TAATATAAGTCGCCTTGACATAGAAAAATTAAGG 30173 37 100.0 36 ..................................... ATAGACCGCACAAAAGACGACGCACTAGAAAAGCTT 30100 37 100.0 36 ..................................... TGTTAAAGAGGTATGGTTAGAGAAGGGCGTGCCGGA 30027 37 100.0 35 ..................................... GCAGATGGCGAAAAATGTTATTTAGTTGATAAGAA 29955 37 100.0 33 ..................................... CGGACTTAAGGAATCTATTGTTTGGATGGATTA 29885 37 100.0 35 ..................................... CCCTTCTTACCATCGTTCAAGCCTCCTGCTTCTCT 29813 37 100.0 35 ..................................... CACTTGCTAAAAGTGTGTATCCATTCCCTAGATCC 29741 37 100.0 37 ..................................... GACGACTTGAAGAAAGAGCTTGAAGAGCTTAAAGAGG 29667 37 100.0 37 ..................................... TCGACAATATTTGAATCCAGATTTGGATTTAGTTTTT 29593 37 100.0 35 ..................................... ATTTCTCAGCCGGGTGTCCTGCTTCGACAAGTATC 29521 37 100.0 36 ..................................... ATAAGGACGCAAGACCGGACTTAGGCTGTCTTCAGG 29448 37 100.0 38 ..................................... TAATAAGTTAGGTGGTCCGTGTCAGGCATTATAAAGTG 29373 37 100.0 35 ..................................... TATTCCTGATTCGAACAGGAATCATAGCCTAACTT 29301 37 100.0 38 ..................................... TAAGTCGTTTGCGGAAGCAAAACGGGACATTGTGAGAA 29226 37 100.0 35 ..................................... GGTATTCCATATATAGTAATAGTAATAATAGTATT 29154 37 100.0 37 ..................................... CCGTAAAAGTAGCTCCACTTGTAAAACATGTAATTGC 29080 37 100.0 36 ..................................... GGTAAATTGATGCTGGAGCTGCACTTGTACTGAATA 29007 37 100.0 37 ..................................... AAATCAGGTTTTGATCTCTAACCAAAATCTTTTTATT 28933 37 100.0 36 ..................................... ATCAGTCGCACCAGCCAGCCCACAAGTCAACAAAAA 28860 37 100.0 34 ..................................... TGTGAGCGTATAAGGAAGTGGTCAAACCTACAGA 28789 37 100.0 35 ..................................... TGGCCCAGTAACTACATCATCAGCAAACATAATTT 28717 37 100.0 36 ..................................... TTCAGTTCGTCTTTGCCGGGATCTCAAAACTCAAAT 28644 37 100.0 35 ..................................... ACATGAAAGCTATACAAAGCTGATGCCAAAAATAT 28572 37 100.0 34 ..................................... AGGACGTTGCAGGCGCGACGGATAAGGCTGCTAA 28501 37 100.0 36 ..................................... TTATAATCGTAACCCTTGCGCCCGTTCATGATCCAG 28428 37 100.0 38 ..................................... TAACTGTATTCATTTTCAAGGAACCGCTTCAGTTCCGG 28353 37 100.0 34 ..................................... AGGAGGAGGATACATATCTCAGTTGCTCTATCAA 28282 37 100.0 33 ..................................... TGAGGTCATATTCAATTATATCGCCGGAAACGC 28212 37 100.0 34 ..................................... CCATTGTAAAGCTTGTGGTTTTCAGTTGCATAGT 28141 37 100.0 36 ..................................... TCGTCGAAGGACAGCTTTTGCTTATATCTTCTAAAG 28068 37 100.0 34 ..................................... CTGTATATGCAACAATTCCAAATGCCGTGCTTAA 27997 37 100.0 35 ..................................... ATATCCAATTTGCACGCGATTAAGTGAACTACCAC 27925 37 100.0 36 ..................................... TTCGCATATACACAGCAAGAGCAGTCATATCTTTAG 27852 37 100.0 33 ..................................... TTCCAATGAAATTGTGGTATCCCATTCCTAAGC 27782 37 100.0 36 ..................................... CGCATTTTGTATTCCTCCCATAGCGTGCAGTATTAT 27709 37 100.0 36 ..................................... CATCTAATTTAGGATCAGACCAACGTATCAAACCGC 27636 37 100.0 35 ..................................... ATAAAACAGTTGATGCATACGCTGTGCTTTGTGAA 27564 37 100.0 37 ..................................... TCAAGTCCATCAAATTCATTTGATCTGCATTCGTGTC 27490 37 100.0 32 ..................................... ACGAACTGCCAGCCGTAGAATCAGCAACTTAT 27421 37 100.0 38 ..................................... CCTTTTTATCGAGCGAAGTAACTTCAACTGAAAAAAAA 27346 37 100.0 37 ..................................... CCATGTGGTGAAGTCCGTAGCTGGCGTTTGTTGAATC 27272 37 100.0 34 ..................................... GCAGCTTCAGGAGACAGTCTGACAGTAACAGTTT 27201 37 100.0 36 ..................................... TACTCTTCATAGAAGTCTTTCAGGCTTTCAATATCG 27128 37 100.0 35 ..................................... AAAAAAAGTCAAGTAGATATAAAAGGGAAAATCAA 27056 37 100.0 35 ..................................... ATAAGGTCACGTCTATTTATGAACTTTTGAGAACA 26984 37 100.0 37 ..................................... AGAGCTTCACAAGCGCAATCTCTAGCTCCCTGAACAA 26910 37 100.0 36 ..................................... GGATGACTCTCGATTACATAGACGAAAATCCTGAAT 26837 37 100.0 35 ..................................... CTGAAACTCTTCCTGGAGATGGGACTGATACAGAC 26765 37 100.0 36 ..................................... ACTTTAGGTTGAGCCATTTGCTGAACACTAAGATCT 26692 37 100.0 37 ..................................... AGATATATCTGGCTGTCGTAAACACGTTCCGGTTTTT 26618 37 100.0 35 ..................................... TGATTCTTGGGGGCCGGCTTTCTGGCTGGTTGGAA 26546 37 97.3 36 .....C............................... TCCATCCTGTTTTCAAACTGCTCTACAATAAAAGCA 26473 37 100.0 35 ..................................... CTGCACAACTAATGTACTAATTTGTACTATGAAAT 26401 37 100.0 38 ..................................... CATTGCAGACTGATGGTTATGTCTGAGCGATAATTATA 26326 37 100.0 37 ..................................... TTTGTACATCCTGATATTTTTGACACATCTGTTCTAC 26252 37 100.0 35 ..................................... ATTATCATCAGTGTACTTTCAATGACACTGATTCT 26180 37 100.0 35 ..................................... AAGTAGTCTATGAAGATAAGGATTTAACACAATTC 26108 37 100.0 34 ..................................... ACATAACCTAACATAAGTTATATATACTATTAGG 26037 37 100.0 35 ..................................... TTAATATCTGCATCATACCAGGAATAACGGTTATA 25965 37 100.0 35 ..................................... AAATTGCATCGGCTGAGAATGTGTTAGAATACCGG 25893 37 97.3 33 ...........G......................... TAAATTAAAATTAGTAAATCCTTATACAGATGA 25823 37 100.0 35 ..................................... GATTTTCTGCTATACACATCTGTTCATAGTTGTTC 25751 37 97.3 37 .....C............................... TGTATGACTTCGTGATTGCAAACAGCCCATTGCTGAT 25677 37 97.3 35 .....A............................... ATCCTCCTGGTATGGGTAGCTGGATTTTTCTTTTT 25605 37 97.3 35 .....A............................... TATTTTCCTTTCAAATCATCAATTTCAGATTCAAA 25533 37 97.3 35 .....A............................... CCTGATACTGCTACTGGTCTCTGTTGATAGAGTGA 25461 37 97.3 36 .....A............................... AACGCAGTGGTGCAGGCTCTTATAGAGGTCGGAAGT 25388 37 97.3 37 .....A............................... AAAGCGGTTCTGGATCGTCTCAAAGTTCTGACGGGGT 25314 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 25239 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 25164 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 25093 37 91.9 0 .....A.............................GT - Deletion [25057] 25055 34 78.4 36 ---..A..AGT..C....................... CTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 24985 37 81.1 35 TG...A..AGT..C....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT T [24970] 24912 37 83.8 34 .G...A..AGT..C....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT T [24897] 24840 37 81.1 35 GG...A..AGT..C....................... TATCCCCTTAGATCCCTATAGACATACATGCCCGA T [24825] 24767 37 100.0 38 ..................................... CAGATTTGTTTTACTCTTCTAAGAGTAGGTATTGACTC 24692 37 100.0 35 ..................................... TATGGCCTTGGCCTCGCGCAAAATTCGCCTATAGG 24620 37 100.0 37 ..................................... CATTAAAAAAGGTAACAGCCCGAAGTATATCCAAAAA 24546 37 100.0 36 ..................................... TCATAAAATATGCGTTTTCTTCCTCGTTTCTCCATA 24473 37 100.0 33 ..................................... CAGACTTAAGGAATCTATTGTTTGGATGGATTA 24403 37 100.0 37 ..................................... AGAGTGCGACTTTTAGAATACAACTTGATAAAATACT 24329 37 100.0 38 ..................................... GTTTCAGGGAATTCATTTCTAAGAACTCTTGCAGAATT 24254 37 100.0 38 ..................................... ACTACAAGGCGTTCCTCAAAGTAATACAATAATAAAAA 24179 37 100.0 37 ..................................... ACGAATCCCATTAACCTGTATTCAGTCGCTTTCTTGT 24105 37 100.0 36 ..................................... TTTTGCAAATTAAGCTCATCCCTAATCCATGCCGGA 24032 37 100.0 34 ..................................... TAGATGTTGTCGGAGGGGACATCTACAGCAATGA 23961 37 100.0 36 ..................................... TTTCACACTCTCCAAATAAAAAAGGGAAATCTGAAT 23888 37 100.0 36 ..................................... TATACAACTAAAAATAATTAACAGTGATAAAAACAT 23815 37 100.0 36 ..................................... AGGATCAGGACGACGGCAATAATACTGAAGAATCCT 23742 37 100.0 37 ..................................... AACTCATTCCTTCTTGATGTCTGAAGCCAGCCTTCCC 23668 37 100.0 36 ..................................... TGATCGAGATAAAGATAACTGATGAAATGCGAGAAA 23595 37 94.6 0 ...................................GA | ========== ====== ====== ====== ===================================== ====================================== ================== 107 37 98.9 35 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TAAACTGATACTTTCCCTTGTCCAGGACTGGCTCAAGAAAGGCTCACAGGCAAGCGGTTCCGGGAAAAATTCTGGAAAAGGGCTGCTTCAGGGTGGGATAATCTCTCCGCTTCTTGTAAACTTCTACCTGGACCAGTTCGATAACCACTGGGCTGAAATCGGGCTCAAGAATGTTGAAGGGGAATCAATTGAGCACCTTGTCCGTTTTGCAGATGATTTCGTGGTCCTTTCAAAGGAATGGATCAACCCTGAGAGAGTTAAGGAAGCTATGGCTGAACTTGGACTTGAATTAAACAAAGATAAGACCTATGTCGGGACTGCCGTAAATGGGTTTGAATTCGTGGGTTTTTACTTTGAGGAAATTGAAGAGGAAAACGGGGCTGGGAGCATTATAAGAGTTATGCCTACCGAAGGGTCTATTGAGAAGGTAGTCGAGAGTATTGAAAGTATTGGAAGTAATGGAGATGTATATAATATAAATAGCATAGAAAGTCAAGGAA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [36-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //