Array 1 1320-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635519.1 Olsenella phocaeensis strain Marseille-P2936T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1319 31 100.0 38 ............................... TTGTTCTGCGCGTCCGGCTCGAACCCCTGCCTCCGGGT 1250 31 100.0 37 ............................... GTCTCCTCGACGCGTGCGATGGCCTCCTCGACCTCGT 1182 31 100.0 37 ............................... CTCCTTGACCCTCTCCGCGAGGTTCTGGGCGAACGGT 1114 31 100.0 36 ............................... ATAAGGAGGTGTCGCACCCCCCCGTGCAGGGGTGGT 1047 31 100.0 37 ............................... TTGTATCCGTCGACCCCGTTGTCCACCTGCGGCGTGT 979 31 100.0 36 ............................... CGTCCGGCGTCTCCCAGCTCTCGCAGACGTAGCCGT 912 31 100.0 37 ............................... TCGAGCTCGAGCGCGTCAATCCTCACCGGCTCCGCGT 844 31 100.0 36 ............................... CCTCGGAAGGAGTCAACCCATGTCCATCTCCAAGGT 777 31 100.0 37 ............................... GACCCAGAACTCTTCATGTACAACTGGCACAACCAGT 709 31 100.0 36 ............................... AGCGCTGAGCAGGCGGAGAAGGTCTTGCCGGTGCGT 642 31 100.0 36 ............................... CTCCCTCTCCCTCTGGTAGCACTCCTCGCAAACCGT 575 31 100.0 37 ............................... CTCCCATGATCAGCGCCAGGGCGTCGTCGACGCTCGT 507 31 100.0 35 ............................... GGGAGCATCAGCGCCCCCTCCACCACCGAGTCAGT 441 31 100.0 38 ............................... TCGACCGTCTCGCGGCTCGTCCCGTAGAGAGCGGCCGT 372 31 100.0 37 ............................... AAGTTCACCGGCTCCGCGACGCAGCTCTTCAGCGAGT 304 31 100.0 36 ............................... CATCGACACCATGAGCGACCGCCTGTCGAACCTGGT 237 31 100.0 36 ............................... AAGAGCACGGCCATGCAGGCCGCGCTCGGTGCCGGT 170 31 100.0 36 ............................... ACCAGCTCCAAGGCCGAGTACGACGCCGTCGGCGGT 103 31 100.0 36 ............................... ACCATCGCCATCCGCGACGCCGCGCTCTAGGAGCGT 36 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 20 31 100.0 37 CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Left flank : TCTTGATGACTACCCGGCCTTTCTCTGGAGGTAGCGATGTATGTTCTCGTGACGTATGACGTGGCGAGTAGCGATGCGGGTGGTTCTGCGCGGCTGCGCCGGGTGGCAAAGGTATGTACGCAATATGGGCAGAGGGTGCAGTATTCCGTCTTTGAGTGCCTCGTGGATCCCGCGCAATACGAGAGCATGAAGCATGAGCTATTTGGACTAATCGACAAGGAGAGGGATAGCTTGCGGTTTTACAACCTTGGCAAACGCTGGGAAAGCCGCGTGGAGCATCTTGGTGCCAAGGAAACGTACAACCCTGAAGGGCTTTTATGCATATAGCCATCCGATAGCCTGCGCGAACCTGTAGTGCCGGAGTAGCTCTGGGAGGTTCGCGCCATTTCTGTCTTCAATACGCGTGATTGATCGTCTTGAAAATGCAGTATGTGGGTGGCGTTCCTTGAGAATGGAATGTATGCTTGCAGATAATTCATGGCTGCGCATGAATTGACAGT # Right flank : CGCGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1481079-1481444 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635494.1 Olsenella phocaeensis strain Marseille-P2936T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1481079 36 100.0 30 .................................... GGAGTGGCTCTCGCACGGCGCGACGGTGGG 1481145 36 100.0 30 .................................... CAGCTGGACAACGCTACGACCTCGGGCTGC 1481211 36 100.0 30 .................................... TAAAGAGTTAGGCTTATGAGAACCAAGGCC 1481277 36 97.2 30 .C.................................. GAGCGTGCGCGGCTGCACGCCCAGCGCCGC 1481343 36 100.0 30 .................................... CGCGTGGCGCGCCTGACGGCGTCCCTCGTG 1481409 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.5 30 GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC # Left flank : GGTACCGCCCGTCGGGTACGACTCGGACGCGACCAGGGCGAAGAAGTCCAAGGACAAGGCACATGCCAAGGAGTTCAGGACCGCCACGAAGCTCGCGGCCCATGGCTACTCCGTCACGTTCTGGGACGACGAGCTGCATGAGCCGAACCCAGACGGGAAAGGGACCGTTACCATTGGACGTTCCGACCTTGCGTCAGGCGTCGAGATAAAGACGCTAGATGGGGCAAGTTCCTACTCGACCGTCGACGGGCACATGAGAAATGCAAGAGGAAAGAGGGGTGTTTCCCTCGTCGTTCTCGACTTCAGCCAAAACAAGGCACTTGATGACGAGCAAGCCGTGTCATTCACGCGGAAGGCGATGAAGAACCGTCGCATCAGCGAAGTGGCCGTGATCGACCACGCGGGAGTGATAAGCAGACTTCATCTAGAAAAATAATGACGGGTCCCTGCTCCACAGCTGGTGCATAGACCCGTCTGACGGAATTGTACCCAATCTCACA # Right flank : CTGGTAGTAAAGCTCTAGCGTTCGCTTTAAACCTGCGAAAGGGCATAGAGAATTGCGTCGCAGTCTTGACCATACTCGTTCAGGCCATCGTCCGATAGGCCCCGGAGCTGCAACTCCTCAGTTACCTTGTCATCCGCATCCAGCCACTGCGAATCTGTGAGGGACGATATGTCGTGGGGGATACGGAGAGTGTCAAGAATCTGCTCCTGCCTCTTCGTCAGTGCCATACCGCCTCCTCATCTTCTTGTTCGTCGGGTATGCCGTGATTATATCCCTGGTCGTTGGATTGATAACTACTGTGACATCGCTCCCAACAATTTTCTGGGCCTTACGGCCTTGCGAGTCGACCGTAACGGGAAAGGTATGCATTGGACTTGCGATTGCCCTTTTAACCTGTCCGTCTGTGATTCCCCTTTCGGCCATCCGCTCGGCGGCGTGCCTGGTGGCCCTCGGCGCGTTCTTCGCGCCCCTCGGCTGCACGGAGAGCTCCGGGGCCCTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: F [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1485757-1485222 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635494.1 Olsenella phocaeensis strain Marseille-P2936T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1485756 31 100.0 37 ............................... TCGATGCCCGCCGACTCGGTGAGCCTCTTGTACTTGT 1485688 31 100.0 37 ............................... TCGACGTCGGAGGAGCGCGAGCGGGCCGTCGAGATGT 1485620 31 100.0 36 ............................... TCGACTATGCTCATGAACTCGCAGAAGATGATGTGT 1485553 31 100.0 36 ............................... CCGTACACGTTTGTTGACCACACGTCTCGTTACCGT 1485486 31 100.0 17 ............................... CCGTGCGGAAGCCGGCA Deletion [1485439] 1485438 31 77.4 15 .AGAAG.GC...................... GGCGAGCGCAGGGAG Deletion [1485393] 1485392 31 83.9 37 ....TGGT..G.................... GAGCGCGTGATACGCGACGCCTTCGCGCTCGGCGGGT CGTG [1485378] 1485320 31 96.8 37 .........T..................... TTGCTCGCCTTGTAGTCGTCCCCGCTCGTTATCTCGT 1485252 31 90.3 0 .........T.................T..G | ========== ====== ====== ====== =============================== ===================================== ================== 9 31 94.3 32 CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Left flank : TGACCGCCGACGAGGAGGAGCTCCACAACATCGCCCCCGCCGACGTGCCCGTGGACCCCAAGACAGGCAAGTTCGTGGCCGTCGACTCCAAGGGCAACATCTACGCGCCCGAGACCGTCGTCGCGCGCACCCGCAACTTCGACGGCTCCTTCGGCGCACCCGCCCAGATCGAGGTCTCGGCCGTCGACTACATGGACGTGTCGCCTCGCCAGATGCTCTCCGTCGCTGCCAACCTCATCCCCTTCCTCGAGCATGACGACGCCAAGCGAACCCTGATGGGTGCCAACATGCAGCGCCAGGCCGTGCCCCTGATCACCTGCAACGCCCCCCTCGTCGGCACCGGCCTCGAGGCCCGCGCCGCGCTCGACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGCGAGGCTGCGCAAGGCGGGCCACGT # Right flank : AGGAGCCGTATTGGGGCTAGGTTTCTCGACCTGGAAGGTCCGGGTTGATTTTCATAGTCATCCGAACAGGCTGCCCCGACTCCGCACTCTCGCAGCCAGCCGGACGGCGGGCGCCCGGTCCGGCCGTCTCGTCCCGGGCACGTCGGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCGTGCCCCCGCTCTATCCGGCGGCACACCGTCGACTGGGGCACCCTGAGCTCGGCGGGGCGGGCGTCGGCTATCTGCGCGGGGGACAGGCCGCGGGCGATGTCCGACCCGATGGCCCCCATCATGCATTCGAGCTGGCCCTCGTCGCGGTCGACGCCCGTCCGGGACTGCGAGAGCAGGGTGTCGGCGGGCGCCCGGGCCCTCGCGGCCGAGTGCTCGCGCCTCCACCTCCTCGAGCAG # Questionable array : NO Score: 8.63 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //