Array 1 27301-28122 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATD01000122.1 Streptomyces odonnellii strain NRRL B-24891 B24891_contig_122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27301 29 100.0 32 ............................. GCGCTGGAGGCCGAGCAGGCCCGCGAGGACCG 27362 29 100.0 32 ............................. GCCCGATCAACGACGAAGACCTGGCCACGGCC 27423 29 100.0 32 ............................. GAAGCGGACCGGCTGCTGTCGGCTCTGCCGTA 27484 29 100.0 32 ............................. GCGAATACGACTGCGCCCTCTGCATGATCGCT 27545 29 100.0 32 ............................. CCGAGGACCGTCCCCCTGGCATCGTCGTCGGC 27606 29 100.0 32 ............................. AACCGGCTCTACATGCCGAATGGAAAGGTCAC 27667 29 100.0 32 ............................. GCCGCGAGCGACCTCGGGACGACGGTTCACGA 27728 29 100.0 32 ............................. ATCCCGTTGGCCTCCGCGCGCAGGAACAGCCC 27789 29 100.0 32 ............................. CCCGGGTTGGATCCGACCATGACGGTGCCGGA 27850 29 100.0 32 ............................. GCGCCGCGCTGTGGGACACCTACATGGACGCC 27911 29 100.0 32 ............................. TGGTGTGCCCATGACCGCGCGCATTGCCCGGC 27972 29 100.0 32 ............................. CGGCTCGTACTCCGCACGATCGTGACCATTCG 28033 29 100.0 32 ............................. TTCTGATGGGGACGGCGGCACCGGTTCCCATC 28094 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGGTCCCCGCGCAGGCGGGGGTGTTCCG # Left flank : AGCAGCTGTGGAAGCACGCGATGAGTGGCGTACTCATGACGAACCTTCTTGACCCTGCTGTCATTCACCCGGTCATGCGCGTAAGCAGCCTCACGGAGAAATCCACAGTGAGCCGGTCTCTCCCGGACGGCCAAGTCCTGGAACTGCGGCATGATTTTCCCGAGGTCATGAAGCCCGGCCCAGAACATGACAACCCGCCGGGCCTGCGGTAAATCGATGCCTAACGCCTCAGCGATACAACGGCGCTGAGCGGCAGTCAGGACGACATCCCAAACGGCCCCGCAGACCATCGCCGAATCCACGAGGTGCCCGATGACGGGGTACGGCCTCGCAAGCCCGTCGGACTTCCCCCAAAGACGCGCGTCGATCATGTCCCACCCCTCCGAGTGCGTTCTCTCACTGAGGGGTACTTCACCACATGCCTCTGACACCATGGAGGTGTGAGAATGAGCGATGGTCAAGGAACAGCAAAGCCCCTCTAACGCCGCAGGTCAGGAAGT # Right flank : GGCGTCTCCTGCTTTGCCGCGACCGCTGCCAGCGTGGTCCCTGCGCAGGGGCCGGCCCCGGGAACAGCATCGAGCATGATCCGGGCCATGCTCGGGCCAGCGACCCCGCCCACGTCTCGACGGGCACTATTTGTGCTGGTCAGCGATCCGTTGCCGCCGTACCATCAGCAGACGAAGAACTTGCTGGTGAGCTACTCCCCGAAGAAGCTCGGCCTCTTCTAGGCACAGGGAATGGGCGCCTGACCAGGGCTGATGCCCGGCAAGCGCCCTTCTCGGCGTATATCTGAGCAGCGAGTCGAAACACGCCCCTGCTCCCGATATCCCCCACCCGTACCCCAGCTCACCAGCAGTTCCGGGGCGTTTCCCGGCCAAGGTCTCTCCAACAACAGCTGACGCAATGAGCCGAGTTGTCGGTGGGTGATGAGGCAGCAGGCGATTTCGAGGAACGCTTCGCGGATGTCGGCTCGTCGCTCCCACCGGATGCGCAGGCGGCGGAAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2357-3178 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATD01000172.1 Streptomyces odonnellii strain NRRL B-24891 B24891_contig_172, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2357 29 100.0 32 ............................. GCGCCGTGGCTGTATCACTGCCGCGAGCATCA 2418 29 100.0 32 ............................. CTTGTTGGGCTGCACGGACTGGCCCACATTGA 2479 29 100.0 32 ............................. CTGCGCGAGCACCGCGGCGAGGTGACGCAGTG 2540 29 100.0 32 ............................. AGGCCGGCTAGCTCGTCCAGGTCGCCCCGCTC 2601 29 100.0 32 ............................. CTCGTGGCGAGCGGAGCAGGGGATCTGACGGC 2662 29 100.0 32 ............................. AACCCGGTTCAGCCCGGCACGGCGGCTGCGAC 2723 29 100.0 32 ............................. GCTCTCCAGAAGATCGCCGCAGGCGGGCCGCC 2784 29 100.0 32 ............................. CTCACCGATGAACAGATCGCGGCGGCTGAGGA 2845 29 100.0 32 ............................. TGTAGACCACAGCGAGCCGTGGATCGTGCAAC 2906 29 100.0 32 ............................. GCCTGGCAGACCCGTCACCTAGACGGGCAGAC 2967 29 100.0 32 ............................. TTTCACGGGCGACCCGGCTCCGCCGGCACGGG 3028 29 100.0 32 ............................. CCGTGACTGTCTCGTATACGACGCCGGAGTGC 3089 29 96.6 32 ..............G.............. TCGACAGCGAGCGCCTTGGGGTACGGCACGGG 3150 29 79.3 0 ...G..........G.......CAA...T | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 GTGTTCCCCGCGCAAGCGGGGGTGTTCCG # Left flank : CTACAGGCCGAAGCGCTCTCTCAGGCGGCTTCCGTGGCCGTGATCGAGCAGGTACGAAAGGGCACCGCGTGACGACCGAGTCCCCCCGTTGGTTCACATCCTCCTACAGCGACAACGGCGGCCAGTGCATCGAGGTCGCCGCCAACCTCGCCACTTCACTCGGCGTAGTCCCCGTCCGCGACTCCAAGAACCCGACCGGCCCGGTACTGGACATCCCCGCCGACGCGTTCACCTCGTTCGTAGAGGGCATCAAGACAGGCGAGTTCACCCGTAGCTTCGACGCGTGATCCGCACGCAGCACTGAGCCCCGCCCTTCCTTCTTCCTTTTGGAGCGGCGGGGCTCTTCACGGGCCGACGGCACGGCCGGACGGCTGGCCGGACGGCCGGGGCGCACACCGAGCGCATGGGCACGAACCACATGGCTCTGACACGATGGAGGTATGCGGAGGAGCCCGGGTCAAGCAACGGCAAAGCGCCTCTAACACCGCAGCTCAGAAAGG # Right flank : TCAAGGCCTCGGGCTGGGGCCGTACCGACCCAGCGGCGGTAGGCATCCACGTCGACGTTGCTGCCGCACACAATGGTGACCACGTGCCGGCCGGCGAAGCGGTCACGGTCTTCGAGGATCGCCGCGATGCCGAGCGCGGCCGAAGGTTCGACGACGAGGCCCGCGTGGTCGAGGAGCATCCGCATACCCGCGATGATCGACGCCTCCTGGACCAGGACGGCGTCGTCAGCGACCAGCAGAAGGTCGTCCAGGACGGCCGGGATGGGACGCCGGCCCGCGACGCCGTCGGCGATGGTGTCGGTCGAGTCGGTGGTGACAACACGCCGTTGCCGCCACGAGTGTGTCATCGCCGGTGCGCCCAGCGGCTGGACACAGATCACCTCGACTTCGGGAGCGCAGTCCTTCAGCACATGCCCCACACCGGTGGCCAGCGCCCCGCCGCCGAGGGCGATCAGGACGGTGTCGAACGACGGCACGGTGTCCACGTCCACCAGTTCCAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCAAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6978-7251 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATD01000172.1 Streptomyces odonnellii strain NRRL B-24891 B24891_contig_172, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6978 29 96.6 32 ............................C TCGGAGCCGGTCAGCGCGCCCGTGAGGCGGTC 7039 29 100.0 32 ............................. CAGTCCCTCTTCAGGGTTGGTGAAGCCGGTCC 7100 29 100.0 32 ............................. CGACGGCACGGCTGCCGCCTGGATGACGGCGC 7161 29 100.0 32 ............................. TGGTCGTGCGGGAACTGCGGCTGGTCGTCCCG 7222 28 96.6 0 .......................-..... | G,C [7223,7226] ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCAGGCGGGGGTGTTCCG # Left flank : CGGCTACGGCACGGGCTCACACGAGGAACTGAACAAACTGGCCACCGAACTCCGCGGCTACATCACCCAGCTGCTTCCCGTCGCACAGGCCCGGGCCGACCACATGTGGCACGGAAGCCGGGAATGGTACGTCCTCACCTCGCGCCTGCACGGCATCACGACCGAGGTCGAACGACCGCTCGCCGTCGCCAAGTTGGCCGCGCATGTGCAGGTACGACTTCTCGCGCTCGACTGTGAGTGGCTGTCCATGTGGTACGGCACGGACCTCCCGACAGCGGACCCGACGCGATGACGGTGCGAGCAACGGGCATGTTCGACCGCCCGATCGACGCCGAGACCGGGTGCCCACTGATGCGGCACAACCCGCGCACCCCTGAAACTGAGCAGCCAGACAAACCCAGTAACAGGGACGCGGACGGAAGCAGTGAGACAATGCAGGTATGCGGACGAGCATCGGTCAAGCAACGGCAAAGCAGCTCTAACACCGCAGCTCAGAAAGG # Right flank : GGCCGAGTACCGACGCAGGGCAGGCCCGTTCAGTCGTACCTTCGGCGCCTGATCTGCGCGCTTCGGCGTTCTCATCACGCCCAGGTCAGGACAGGGCGTCGATGGCCTTCATGACCAGAGCCCGGGCCTCCGCCCCGTACACCGCCATACCCCGCAGCGCCTCGAACGCCCGCGCATACAGCTCGATCTCATCCGGGGCGGTAACCGTCACCGATGCGGAAAGCAGCTCCACTTGCACCTGGTCACCGTCGAAGATGGTGAATGCCTCCAGCGGCCACATCGCATGTTCGCGGTCCGCAGTGGAAGGGATCACGCCGATCGATACGGACGGCAGCGACATCGCCGCAAGCAGGTTGCCCATCTGGCCGACCATGACATCTGTGTTCCCGAGGCGGTATCGAAGTACGGACTCCTCGATGAGAAGCACGAAGACATGCGCCCCGTCGCGCATCACGTGCGTGCGTCGCATCCGGGCGTCGACAGCGTCGATTACGTCGTCA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCAGGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 9858-10556 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATD01000172.1 Streptomyces odonnellii strain NRRL B-24891 B24891_contig_172, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9858 29 100.0 32 ............................. TCCGTCCCGGCCTGGGCGCGCACCCACGCGGC 9919 29 96.6 32 ............................T CGGCGAGACGCTGGGGAAGAAAGTCGGACCCC 9980 29 100.0 32 ............................. CGGAAAACCCACAGGGTCACCGGCACTGGGCA 10041 29 100.0 32 ............................. ACGGGTTTCCGTACGGTGCGGCACTGGCCGCT 10102 29 100.0 32 ............................. CGGGTGGAGATGTACCGGGCCGCCTCCACCAG 10163 29 100.0 32 ............................. GCGAAGTGCTGCATCCCAGTCCCCCGGTTCCG 10224 29 100.0 32 ............................. TGATGAGCGAATGCATCTTCGGAGTGGATATC 10285 29 96.6 31 ............................T CCCGGCGGCGACTCCCAGGTCACCGCCGGCA 10345 29 100.0 32 ............................. TCGTCCAGGAACACGTACTCGCGGTCGATGAC 10406 29 96.6 32 ............................C TCCCGAGCCTGCTCGGCCCGCTGTACCGGTTC 10467 29 100.0 32 ............................. TCCCGCTCGTGCACGATCACACCACGGGTGTG 10528 29 89.7 0 ..............C........AA.... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCAGGCGGGGGTGTTCCG # Left flank : TGGCACGGGAGCCGGGAGTGGCACGTCCTGACCTCGCGCCTGCACGGCATTGCGACCGAGGCCAAACGACCGCTCGCCCTTGGCAAGTTGGCCGCACATGCGCAGGTACGACTTCTCGCGCTCGACTGCGAGTGGCTGTCCATGCGGTACGGCACGGACCTCCCGACGGCGGACCCGACGCGATAACGGTGCGAGCAACGCTCCTGGGCGACGCCGGGCCGTCCCCCGTTTCGCCCGCATTGACGCTCGGCCCGGCGCCCTCGCATCACCCCCCATCGGCCCCGCCCGGGCGCCCCGTGGCCCGCAGGCGTGAGGGCACCTCATCCCTGCCGACCACATGGCGGACCAGGCCGAGTCCATCGCCCGCCTGGTTCCTGGCCGCGTGCGGCCGGGGGCTCTGTGATGGAGACGTCACCACATGGCTCTGAGAGGATGTAGGTATGCGAACGGGTATTGGTCAAGCAACAGCAAAGCCGCTCTAACACCGCAGCTCAGAAAGG # Right flank : GAGCCGCACCAGCTCAACCCGCGGCACAAGCAACAACGCCCGCCCGTACCCCCGCCGCATCCATCCGCGCCCCCGTGCCGCCGGATTGCGTCAGGGCGGCTGGGTGAGCTGGGTGAGCTGGGTCAGTACGACTTGGGGAGGCCCAGGGACTGATGGGACACATAGTTCAGGATCATCTCCCGGCTGACCGGTGCGATCCGGGCCACGCGCGCGGCGGTGATCAGGGACGCAAGGCCGTACTCGCGGGTGAGGCCGTTGCCGCCGAGGGTGTGTACGGCCTGGTCGACGGCTCGTACGCAAGCTTCGGCGGCGGCGTACTTGGCCATGTTCGCGGCCTCGCCCGCGCCCGTGTCGTCACCCGCGTCGTACAGGGCCGCCGCCTTACGGGTCATCAGTCCGGCCAGCTCCAGCTCGATATGGGCCTGGGCGAGGGGGTGGGCGATGGCCTGGTGGGCGCCGATGGGGTCGTTCCACACCTGGCGGGTCTTCGCGTACTCGAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCAGGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1438-1893 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATD01000178.1 Streptomyces odonnellii strain NRRL B-24891 B24891_contig_178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1438 29 100.0 32 ............................. TCATCAATGAGCTGCATGTGTCACGTCCTTTC 1499 29 100.0 32 ............................. CGGTTTCCGGCTTCGCGACACCCGGGGAGGCG 1560 29 100.0 32 ............................. CTCGTCCCCTCCTGCGTCGACTGCAACCGTGG 1621 29 100.0 32 ............................. CGCGGGGGACGAATAAGACTTGAGCCGACGGA 1682 29 100.0 32 ............................. CAGGATGCGGGCAAGTGGGAACTCGCCGCGTG 1743 29 100.0 32 ............................. CCGAGCAGGCCAAGCCCGCCGGGATGCGGCTG 1804 29 100.0 32 ............................. CCGAGCAGGCCAAGCCCGCCGGGATGCGGCTG 1865 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGGTCCCCGCACACGCGGGGTTGTTCCC # Left flank : GGCATCCGCGTCGGCCCATGCCCCGCAGGGCCCAGACCGTACCCGCCAAAAATCCCAACCTGTTTCCCGGTTGCGACTCTTCCACTCGCTCGGGTGTCAGCCCGCGACAAGCGTGGCGAGTTGGGCGAGGGAGTCATCCGCCAGTCCCCCGTCTCCCAGGCCGCCTACTCGACACCGATATCGATGCCGGGCTGGACCAGGCGGAGCGGGCATTGAGTGGTACGGCCGGGCTCCGGCGGGCGACCGCGGGCCGCCGAGGCGCTCGCCGATGTCGGGCGCGACGGGCAGTGCCCGTACGACGAGGCCTTCCCGGGCACGAAACGGGCGCGGAGTTGCGCACGCAGGGACGCGATCGTCAGGCATCCGGCACCGGATGGACGAGAATGCCCCAGGGCTAGCGGGATGGTCGCCCGGATTAAGAAGAAACAGGAGCTATGACGGTTTCCCTGAAACTAAGCAAAACCACCCCACCTGCCGGATAAAACCCCAGCTCGCGAACT # Right flank : CCCCGGCATCCCGATCCCGCCCGAGATGACCGAGTGGTCCCCGCGCACGTGGGGCCCCAACATCAGGATGAAACGCCGTGGCAGAGCCTGCGCGGTCGCCCGGTGGAGGTGGTGCGGGAGGTGAGGGCCTGGGCTGCTCGCGTGGCGGGTTCGTCCGCAAGCTCCACCGTCGCCACTCGCCAAGACAAGCGCAGCAACGTCTCTCTCGGTACCCTCACCGCCGCAACCCTCGCCATCCGGCTCCGAACATGATCGGCCGGACAAGTCCTGACCAGGCCTCCCACAACCCGGGCCTCGCACAACCCGGGCCTCGCACAACCCGGGCCTCGGACCGGATCCGCGTTCAGCCGGTGATCTTGAATGTGTTCGGTGAATCGTTCTGCTGCGCCACCTGCCCCGGGAGCAGGTTCTGGATCTTGTTGCCCGTGAACTTCCCCGTGCCGGTGACTCCCGAATTGATCCAGATTCCCTGCTTCGCCGGACGGTCGATCGTGTTGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCACACGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 8367-8882 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATD01000178.1 Streptomyces odonnellii strain NRRL B-24891 B24891_contig_178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8367 29 96.6 32 .........A................... CTCGGCCGACCGTGCCCGGTCGAGGTCGAGCA 8428 29 93.1 32 .........A..................G GCCCTCGGCGAAGGCCTGCGCGCCTCCGTCGA 8489 29 96.6 32 .........A................... TCGCCCGCTTCTTCAAGCGCAACCCCGGCACC 8550 29 100.0 32 ............................. GTTATCCAGCGCAAGGCCGGTACGGTCTCGTA 8611 29 100.0 32 ............................. CACACATTCGGTGACTTGGGGAGAGCTTTAAG 8672 29 100.0 32 ............................. GACATGCCACCCGTCCGGACGTGGATCGGCCT 8733 29 100.0 32 ............................. ATCGTTGCCGAACGCGTCCGTACGCGCTCCCT 8794 29 100.0 30 ............................. GGCGTCGACAGCGCGCCCCTCCCGATCGGT 8853 28 82.8 0 ..............A......C.-CC... | GT [8859] ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTCGTCCCCGCGCACGCGGGGTTGTTCCC # Left flank : GCAGAGCGGGCCATACTGTCCGGCCGTATCGTCCCGTCGAATCATTGGCGTGCGCTGGAGGTTGTCAGGGCTGTGGAACGCCGACAGCTCCCGGAAGCGTCGGACCTCCGAGAGGCGTACGAGGGATTGAAGGTGCTCCCGACGGGGGATCGGGGCTCTCCGCGGTGACATAGGCCTGTCTGCCCTCCCACCCATACCCCGTCGAGCCAATCGCCGCCGCTCGCGCCGGTTGACTGGCGGCTTCGGGTGGTGACCTTGGTGACGATCCGGCCGTTGTCCCCAGGCACGCGGGGGCGGGTGCGGTCCGTGGAGTTAAGGGCGGAGGTACGCGGAGGGTAGCGAACGCCGGACAACCGGCACCGGGTGAACGAGAATGGCACCAGGAGCAAGCGGGACGGCTGCCTGGATTGCCCGCAAGGCGGAGAACAGGAGCTATGCCGGATTCCCCGAAAGTAAGCAAAACTAGCCCACCCGCCGGATAAAACCCCAGCTCACGAACT # Right flank : AGCCGCAGCCGGCCCCCGCCCCCAAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGTTGTTCCC # Alternate repeat : GTCGTCCCCACGCACGCGGGGTTGTTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //