Array 1 1105-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_JIDI01000064.1 Vibrio cholerae strain 5473-62 DN35.contig00064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1104 27 96.4 32 -........................... TTAGTTTGGGATTGTCGTGTGGTGTGTCCGGT 1045 28 100.0 32 ............................ AAACGAAAGCCGTAGCCATACAGTTAAAGTAA 985 28 100.0 32 ............................ ATTCGAACTGCGGCATTCAGCATGGTTTTACC 925 28 100.0 32 ............................ GTAACGAAAAAACTCGCCAAACGCATGGCGGA 865 28 100.0 32 ............................ TCTACGTTTACTTCAAAGCAGTATCTTGCTTT 805 28 100.0 32 ............................ TGTAAATAATATTTCTGCCAAAGTGTAGAGCG 745 28 100.0 32 ............................ TGAACGAGTTGGACAAACTCAGGCTCAGGCGA 685 28 100.0 32 ............................ TTAACCAAATAGCTAGGCAGTTAAACAGCGCT 625 28 100.0 32 ............................ TTTTCTCAGTGCCTCAACAATGCCCACGCCAC 565 28 100.0 32 ............................ ATTTAGCCTAGCCGCCGCCTCTGCGGGTGCTT 505 28 100.0 32 ............................ ACAACAGCAAGGCTTATCCACCCGAGAAGCAT 445 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 385 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 324 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 264 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 204 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 144 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 84 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : | # Right flank : AATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTGGTTCACTGCCATACAGGCAGCTTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 316-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_JIDI01000037.1 Vibrio cholerae strain 5473-62 DN35.contig00037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 315 28 100.0 32 ............................ ACTAGCGGCTTGCGGATATAACTCAAGCTTTG 255 28 100.0 33 ............................ AAGCTTTCGATTTCTTCATCCCCGTTCTTGATG 194 28 100.0 32 ............................ AGCAGCACTAAGAATGCTGCAAACAATGACAG 134 28 100.0 32 ............................ ACTATTTTGATTGCTTACGTTCCAAGTGTTTT 74 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTGCTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : ATTGCTTGATGGTGAAGTAACCGCGATCGATAAGTTCACTGCCGCAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1079-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JIDI01000065.1 Vibrio cholerae strain 5473-62 DN35.contig00065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1078 28 100.0 32 ............................ TGTCTGCAAATTATCTTTTGCAAGCTGCAGGC 1018 28 100.0 32 ............................ TATTAAATATCGAGCGCATCAATGATGATATG 958 28 100.0 32 ............................ GTTGTACTCAGTTTCATCGTCCGTAAACATGT 898 28 100.0 32 ............................ AAGCACATAGCCAGACATCATCGAACCACTGG 838 28 100.0 31 ............................ TTTTCATAGGCTCTTGTTGAGTTTCCACTCA 779 28 100.0 32 ............................ GATCTTAAACATTCTGCGACCAGCTTTGTCTT 719 28 100.0 31 ............................ TTTTCTAACGAGTCCATGCGATAAGCAAAAA 660 28 100.0 32 ............................ TCAAGGGGAATAACAACATGTTGATGGTCATT 600 28 100.0 32 ............................ AATCACCCGGATGGAATCGGCAATCGCGTCCA 540 28 96.4 31 .C.......................... TAAACATCCATACCCATTGATTTCGTGACAC 481 28 100.0 32 ............................ TAGCATTAAGTGAATTGTTGGAGTGCCCACGC 421 28 96.4 32 ...........T................ TTATGTATGCCCTGCAGGGCTGAAAACTGACG 361 28 96.4 33 ...........T................ AGATAAGCGTTGTTTAAGCGGCTGCGGAACACG 300 28 96.4 32 ...........T................ ACGCTATTTGGCGAATTCGTCCACGTAAAAAC 240 28 96.4 32 ...........T................ TTCGCTTAGTTGAGTTTGAGCAAGATAAACAA 180 28 96.4 32 ...........T................ ATTTCCTTGATGTGCTTGATTTGATCAGCTTT 120 28 96.4 32 ...........T................ GTTAAGCGTGGGTTATACATTGTTAATGGTCG 60 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGA # Right flank : AATAATACAACAAAACTCGAGTAACTCTAGCAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 290-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_JIDI01000088.1 Vibrio cholerae strain 5473-62 DN35.contig00088, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 289 27 96.4 32 -........................... ACCAGTGGTGAGCTGAAGCATTGAAGTACCTT 230 28 100.0 32 ............................ GCTTCGATCAAGTCAAAATCGAACTGGTTTGT 170 28 100.0 32 ............................ AGCTCATCTAACTCTTGCCAAACTTCTGGCTT 110 28 100.0 32 ............................ ATTTGAGCGCCGAGTTTAAACGATAGTTCATA 50 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : AGTTGAAATACCATGCTTTTTTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //